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The map label for this gene is yeaM [H]

Identifier: 167625411

GI number: 167625411

Start: 4273293

End: 4274024

Strand: Reverse

Name: yeaM [H]

Synonym: Shal_3503

Alternate gene names: 167625411

Gene position: 4274024-4273293 (Counterclockwise)

Preceding gene: 167625413

Following gene: 167625410

Centisome position: 81.77

GC content: 47.13

Gene sequence:

>732_bases
GTGGTTGCATTGGGATTGGTTGGCGATAAGGAAGATGCAGAGACACCGTTTCATCAACATCGAAAGTGCCAATTGGTATT
GGCACTGAATGGTTTTGTGAAGTGTAAAATTGATGACGCTATCTGGATTGTGCCACCTAATTGCGCTGTGTGGATCCCAA
GTCAAGTGCCTCACAGCAATCAAATATCTAAAAATGCCAATGTATGTATGCTATTTATTGATCCTGATGTTGAAGGCATG
CCTGTTCGTAGTTGCACCTTGTCAGTGACCCCCTTGATCAGAGAGCTAATCGTGCACTTAACGGCACGGGAGCAGGGTTA
TCAGCAAGGTAGTGCTACTGATAACTTGGTTGGTGTGCTTATCGAGCAGCTGCGCATTATGCCAACACAGCATTATGACT
TTCCTATTCCGGCAGAGCCTAGGCTCAAATCTATCGCGAATGCATTAATCGCAGCACCTGAAGACAGACGCACGGTAGCT
CAATGGGCGAGTCAGTTTGCAATGAGTGAGCGCACGTTAGCGAGGCTGGTTAAGAGTGAAATCGGCATTACATTTGGTCG
CTGGCGTGGGCAGCTGCACATCGTTTTAGCATTACAAAAACTGGCAACGGGGGACTCTGTACAGCGAATCGCCGAAGAGC
TGGGTTATGAGTCGGTCAGCGCATTTATTACTTTCTTCAAGAAGACGTTAGGCCAGTCACCTAAGCAATACATCAGGTTG
AAAGAGCTATGA

Upstream 100 bases:

>100_bases
TATTGGGCTTTAGTGACTCTATATAGCTAAAAACGGTCATTATATGAAGTTTGATGCCCCATCATTACCCGAATTCGATT
CAGATCATTTTCCTCAGCGT

Downstream 100 bases:

>100_bases
GTTTTGTCACTAATATATAGTCAGTGTAGCTTCGTGAGTTAATGGTCTATTGAAGATTAATTAAGTTTAAAAGTCGGTAT
TTAATTATCTAGGTATACTA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MVALGLVGDKEDAETPFHQHRKCQLVLALNGFVKCKIDDAIWIVPPNCAVWIPSQVPHSNQISKNANVCMLFIDPDVEGM
PVRSCTLSVTPLIRELIVHLTAREQGYQQGSATDNLVGVLIEQLRIMPTQHYDFPIPAEPRLKSIANALIAAPEDRRTVA
QWASQFAMSERTLARLVKSEIGITFGRWRGQLHIVLALQKLATGDSVQRIAEELGYESVSAFITFFKKTLGQSPKQYIRL
KEL

Sequences:

>Translated_243_residues
MVALGLVGDKEDAETPFHQHRKCQLVLALNGFVKCKIDDAIWIVPPNCAVWIPSQVPHSNQISKNANVCMLFIDPDVEGM
PVRSCTLSVTPLIRELIVHLTAREQGYQQGSATDNLVGVLIEQLRIMPTQHYDFPIPAEPRLKSIANALIAAPEDRRTVA
QWASQFAMSERTLARLVKSEIGITFGRWRGQLHIVLALQKLATGDSVQRIAEELGYESVSAFITFFKKTLGQSPKQYIRL
KEL
>Mature_243_residues
MVALGLVGDKEDAETPFHQHRKCQLVLALNGFVKCKIDDAIWIVPPNCAVWIPSQVPHSNQISKNANVCMLFIDPDVEGM
PVRSCTLSVTPLIRELIVHLTAREQGYQQGSATDNLVGVLIEQLRIMPTQHYDFPIPAEPRLKSIANALIAAPEDRRTVA
QWASQFAMSERTLARLVKSEIGITFGRWRGQLHIVLALQKLATGDSVQRIAEELGYESVSAFITFFKKTLGQSPKQYIRL
KEL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=237, Percent_Identity=44.7257383966245, Blast_Score=222, Evalue=1e-59,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 27156; Mature: 27156

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVALGLVGDKEDAETPFHQHRKCQLVLALNGFVKCKIDDAIWIVPPNCAVWIPSQVPHSN
CEEEECCCCCCCCCCCHHHCCEEEEEEEECCEEEEEECCEEEEECCCCEEECCCCCCCCC
QISKNANVCMLFIDPDVEGMPVRSCTLSVTPLIRELIVHLTAREQGYQQGSATDNLVGVL
CCCCCCCEEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
IEQLRIMPTQHYDFPIPAEPRLKSIANALIAAPEDRRTVAQWASQFAMSERTLARLVKSE
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IGITFGRWRGQLHIVLALQKLATGDSVQRIAEELGYESVSAFITFFKKTLGQSPKQYIRL
HCCEEECCCCEEEEEEEHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHEE
KEL
CCC
>Mature Secondary Structure
MVALGLVGDKEDAETPFHQHRKCQLVLALNGFVKCKIDDAIWIVPPNCAVWIPSQVPHSN
CEEEECCCCCCCCCCCHHHCCEEEEEEEECCEEEEEECCEEEEECCCCEEECCCCCCCCC
QISKNANVCMLFIDPDVEGMPVRSCTLSVTPLIRELIVHLTAREQGYQQGSATDNLVGVL
CCCCCCCEEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
IEQLRIMPTQHYDFPIPAEPRLKSIANALIAAPEDRRTVAQWASQFAMSERTLARLVKSE
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IGITFGRWRGQLHIVLALQKLATGDSVQRIAEELGYESVSAFITFFKKTLGQSPKQYIRL
HCCEEECCCCEEEEEEEHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHEE
KEL
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]