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The map label for this gene is aaeR [H]

Identifier: 167625320

GI number: 167625320

Start: 4154059

End: 4154970

Strand: Reverse

Name: aaeR [H]

Synonym: Shal_3409

Alternate gene names: 167625320

Gene position: 4154970-4154059 (Counterclockwise)

Preceding gene: 167625328

Following gene: 167625317

Centisome position: 79.49

GC content: 41.89

Gene sequence:

>912_bases
ATGAGCATGTATAGTTTTGAACAGTTGAAAATCTTTGTCACGGTATGTGAAACCGGCTCTTTTTCTGCTGCCGCGCGAAA
ATTAAAGCGAGCACAGTCTGGTGTTAGTCAGGCGATTGCCAACCTTGAAATTACGATCAATCAAGAGCTGTTTAATCGTG
ATAAAAATACGCCAATATTGACCGATAACGGTAAAGCATTGCTGCCGATAGCCCAGTCGATATTGCATCAACAGCAATAT
TTTGAACAAAAAATTGAATCATTAGCGAAAGCATCTGAGCATGAATTAATTATTGCGGTGGATGAAAGTTTAATAAACGA
TGACTTGTTAGGGATCCTTGTCCCCTTAGCCGAAAAGTTTCCTATTACGCATTTTGAAATCATCGCGGCATCTACCTTTG
ATGTCGAAGAGTTAGTGCGTAAAGGGAAAGCTCAGATAGGGATCATCTATGCCGACGGTGAGCTTAAGGTCGATATGGAC
TTTTTTATTCTTGGCCAAGCTCGTTTTCTAACCATTGCTTCTTCAAAGCATGAGTTAGCACAGTTACCTGTGGTTCAGGA
CTCAGATTTAAAGTCTTATCGCCAATGTGTCCATCGCAGTGCGAAACAAAAAGAACTTTGGTTCAGTTACGCCATTAGCA
CTATGGTTTGGTATACCAACACACACCAAAACTTAGTCACCTTAGTCGAAAAAGGCGTGGGTTGGGCTGTCGTGCCTGAA
TGGTTGGTAAAATCGAATATTGAACGAGGTGAGATTGTCGCTTTGCCTGTGGCACATGAATACAATGGCTGGTTAACTAC
GGTTGGCTGCTTAGTGTCGAGAAGTCATGGTTCAGGACCTGTGCTAGAAAACGTAATCGATAGCTTAAAGAACCACTTCT
TTAGTCATGAGTATAAGACTATGTGGGAGTAG

Upstream 100 bases:

>100_bases
AGCTTTTAAGTGGCGCCGATTATTGCAGGAATAAGAAGAAGTGAAAGTTAACAGCTATCACAGTTAGTGATAGGCTGTGA
ATGACGGAGTCCCTTGGGTG

Downstream 100 bases:

>100_bases
CGCTTAAAGTTGATTAAAGCTAACAATAAAAGCGCTTAGCTAAAGTACTGGGCCAGATTCTCTCGCTCTCTATCCATAAC
CGACAGTTCATGGGCTTCAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MSMYSFEQLKIFVTVCETGSFSAAARKLKRAQSGVSQAIANLEITINQELFNRDKNTPILTDNGKALLPIAQSILHQQQY
FEQKIESLAKASEHELIIAVDESLINDDLLGILVPLAEKFPITHFEIIAASTFDVEELVRKGKAQIGIIYADGELKVDMD
FFILGQARFLTIASSKHELAQLPVVQDSDLKSYRQCVHRSAKQKELWFSYAISTMVWYTNTHQNLVTLVEKGVGWAVVPE
WLVKSNIERGEIVALPVAHEYNGWLTTVGCLVSRSHGSGPVLENVIDSLKNHFFSHEYKTMWE

Sequences:

>Translated_303_residues
MSMYSFEQLKIFVTVCETGSFSAAARKLKRAQSGVSQAIANLEITINQELFNRDKNTPILTDNGKALLPIAQSILHQQQY
FEQKIESLAKASEHELIIAVDESLINDDLLGILVPLAEKFPITHFEIIAASTFDVEELVRKGKAQIGIIYADGELKVDMD
FFILGQARFLTIASSKHELAQLPVVQDSDLKSYRQCVHRSAKQKELWFSYAISTMVWYTNTHQNLVTLVEKGVGWAVVPE
WLVKSNIERGEIVALPVAHEYNGWLTTVGCLVSRSHGSGPVLENVIDSLKNHFFSHEYKTMWE
>Mature_302_residues
SMYSFEQLKIFVTVCETGSFSAAARKLKRAQSGVSQAIANLEITINQELFNRDKNTPILTDNGKALLPIAQSILHQQQYF
EQKIESLAKASEHELIIAVDESLINDDLLGILVPLAEKFPITHFEIIAASTFDVEELVRKGKAQIGIIYADGELKVDMDF
FILGQARFLTIASSKHELAQLPVVQDSDLKSYRQCVHRSAKQKELWFSYAISTMVWYTNTHQNLVTLVEKGVGWAVVPEW
LVKSNIERGEIVALPVAHEYNGWLTTVGCLVSRSHGSGPVLENVIDSLKNHFFSHEYKTMWE

Specific function: Activates transcription of the aaeXAB operon [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789639, Length=300, Percent_Identity=24.3333333333333, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1786401, Length=266, Percent_Identity=25.9398496240602, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788887, Length=308, Percent_Identity=23.3766233766234, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34126; Mature: 33995

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMYSFEQLKIFVTVCETGSFSAAARKLKRAQSGVSQAIANLEITINQELFNRDKNTPIL
CCCCCHHHEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHCCCCCCCEE
TDNGKALLPIAQSILHQQQYFEQKIESLAKASEHELIIAVDESLINDDLLGILVPLAEKF
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCHHHHHHHHHHHHC
PITHFEIIAASTFDVEELVRKGKAQIGIIYADGELKVDMDFFILGQARFLTIASSKHELA
CCCEEEEEEECCCCHHHHHHCCCCEEEEEEECCEEEEEEEEEEECCEEEEEEECCCHHHH
QLPVVQDSDLKSYRQCVHRSAKQKELWFSYAISTMVWYTNTHQNLVTLVEKGVGWAVVPE
HCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHEEEECCHHHHHHHHHCCCCCCHHHH
WLVKSNIERGEIVALPVAHEYNGWLTTVGCLVSRSHGSGPVLENVIDSLKNHFFSHEYKT
HHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHH
MWE
CCC
>Mature Secondary Structure 
SMYSFEQLKIFVTVCETGSFSAAARKLKRAQSGVSQAIANLEITINQELFNRDKNTPIL
CCCCHHHEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHCCCCCCCEE
TDNGKALLPIAQSILHQQQYFEQKIESLAKASEHELIIAVDESLINDDLLGILVPLAEKF
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCHHHHHHHHHHHHC
PITHFEIIAASTFDVEELVRKGKAQIGIIYADGELKVDMDFFILGQARFLTIASSKHELA
CCCEEEEEEECCCCHHHHHHCCCCEEEEEEECCEEEEEEEEEEECCEEEEEEECCCHHHH
QLPVVQDSDLKSYRQCVHRSAKQKELWFSYAISTMVWYTNTHQNLVTLVEKGVGWAVVPE
HCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHEEEECCHHHHHHHHHCCCCCCHHHH
WLVKSNIERGEIVALPVAHEYNGWLTTVGCLVSRSHGSGPVLENVIDSLKNHFFSHEYKT
HHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHH
MWE
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]