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The map label for this gene is 167625317

Identifier: 167625317

GI number: 167625317

Start: 4152203

End: 4152784

Strand: Reverse

Name: 167625317

Synonym: Shal_3406

Alternate gene names: NA

Gene position: 4152784-4152203 (Counterclockwise)

Preceding gene: 167625320

Following gene: 167625310

Centisome position: 79.45

GC content: 40.55

Gene sequence:

>582_bases
ATGACTGTCAAGCATAAGAAGCGCGGTAGACCAGCGAGTCAGGCAAGTCAATTAAGCAAAGAGGCGATAGTTATACAAGC
TAAGGCCTTGATGTTAAGCGATGGAAAAATACCTAGTATTCGTCATCTAGCGGGTAAATTATCTGTCGATGCGATGGCGA
TATATCACTACTTTAAAAACAAAGATGCCTTACTTGAAGCAATAACAACCTCCCTAGTGAGTGAGATTTGTCAGCCAGAA
GCGGGTGATAAATGGCAGCAGGCCTTGACTGAGCTAAGTCTAAGTTACTTAAATTTACTCAAGCAGTATTCTGGGTTATT
AGAAACCTTGTTATCGATGCAATCGAGTGGGCCTGCGGATATCTTTATTGCACGTTTTAAACTGATTTTAGCGCCATTAG
CGTTAGAGGAGACTCAACTTAACAACGCATTATGTTTACTGGTGGATTATCTGCATGGCTTTGCTTTAGCCTGCCGTTGT
AATAGTAGTGAGCAAGAATTGGAATTGCAGGCAATTTTAGGCCCATTGTCATTAATTTTTAACATGCTAGAAACCCAATC
TGCAGATGAGTTTATGATCTAA

Upstream 100 bases:

>100_bases
TGATAAGTTTAGATGCTGCCTTCATGGCTTGTTAATCAAATCACTTACAGATAATATATTCTACACTGTAGAATAAGTGT
GATTTTAACGAGACTCTTTT

Downstream 100 bases:

>100_bases
TACCAATTAGTATTAGATTGAAAAAGCGAGCACCAATGGCACTCACTTCGATATTAGTTTTAGAACAGTAGAGGTGTTTG
CTTACTGGGTTCCATCACGA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator TetR Family

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MTVKHKKRGRPASQASQLSKEAIVIQAKALMLSDGKIPSIRHLAGKLSVDAMAIYHYFKNKDALLEAITTSLVSEICQPE
AGDKWQQALTELSLSYLNLLKQYSGLLETLLSMQSSGPADIFIARFKLILAPLALEETQLNNALCLLVDYLHGFALACRC
NSSEQELELQAILGPLSLIFNMLETQSADEFMI

Sequences:

>Translated_193_residues
MTVKHKKRGRPASQASQLSKEAIVIQAKALMLSDGKIPSIRHLAGKLSVDAMAIYHYFKNKDALLEAITTSLVSEICQPE
AGDKWQQALTELSLSYLNLLKQYSGLLETLLSMQSSGPADIFIARFKLILAPLALEETQLNNALCLLVDYLHGFALACRC
NSSEQELELQAILGPLSLIFNMLETQSADEFMI
>Mature_192_residues
TVKHKKRGRPASQASQLSKEAIVIQAKALMLSDGKIPSIRHLAGKLSVDAMAIYHYFKNKDALLEAITTSLVSEICQPEA
GDKWQQALTELSLSYLNLLKQYSGLLETLLSMQSSGPADIFIARFKLILAPLALEETQLNNALCLLVDYLHGFALACRCN
SSEQELELQAILGPLSLIFNMLETQSADEFMI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21298; Mature: 21167

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVKHKKRGRPASQASQLSKEAIVIQAKALMLSDGKIPSIRHLAGKLSVDAMAIYHYFKN
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
KDALLEAITTSLVSEICQPEAGDKWQQALTELSLSYLNLLKQYSGLLETLLSMQSSGPAD
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
IFIARFKLILAPLALEETQLNNALCLLVDYLHGFALACRCNSSEQELELQAILGPLSLIF
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHH
NMLETQSADEFMI
HHHHHCCCCCCCC
>Mature Secondary Structure 
TVKHKKRGRPASQASQLSKEAIVIQAKALMLSDGKIPSIRHLAGKLSVDAMAIYHYFKN
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
KDALLEAITTSLVSEICQPEAGDKWQQALTELSLSYLNLLKQYSGLLETLLSMQSSGPAD
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
IFIARFKLILAPLALEETQLNNALCLLVDYLHGFALACRCNSSEQELELQAILGPLSLIF
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHH
NMLETQSADEFMI
HHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA