| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is bax [H]
Identifier: 167625253
GI number: 167625253
Start: 4082172
End: 4083116
Strand: Reverse
Name: bax [H]
Synonym: Shal_3342
Alternate gene names: 167625253
Gene position: 4083116-4082172 (Counterclockwise)
Preceding gene: 167625254
Following gene: 167625252
Centisome position: 78.12
GC content: 46.56
Gene sequence:
>945_bases ATGTCTTTTACTAAAATACTCGTTTGTATGGTTTTGCTTACGTCGCCGCTTGTTTTAGCTAGCTCAAGTCTTAATCTAAG CCAGAATCTCAACGCTATCCACAGTTTGCCTTTATCTCCTGAGCAAGTGCAACAACCTTACCCTCATGTCACCGTTAAAA CGCTAAGGTCGGCAGATCAGCTGATCACTGAGTTTGATAAAAATAACTATCAGCTTGGGCGCGTTGAGGACAGCAATAAG CTCCCAGCCTACTTTATTGAAAACTTGCCGAGTGATTTAAATGCGCTGCCGGTATCGCAAAAAACATCCGGTTTTATTCG GCTACTGATGCCCACCATCAAGGCGGTGAACGACCGTATTTTGCTGATAAGAGATGAGTTAAGCAGGTTATCGGCCAAAC CTGCATCCCAGTGGTCTGAGGCTGAGAAGCTTTGGGTGCAAACATTGTCAGACTCTTACGCGATAAAGTCAGGAGATATA GCCGAGTTACTCTTGCATATCGACATTATTCCTGCCGGTATGGTGCTTGCGCAAGGTATTGATGAGAGTGGTTGGGGAAC AAGCCATTTCGCAATAGCAGCCAATAATCTCTATGGTGAGCATCTGCCCCACGATGGCGGCAAGTACTTAACGACGCCGG ACGGTCATGTAAAGGTGGCTGCATTTAGTGATCTGTACCAGAGCACCGCAAGTTATATGCATAACCTCAATACGACACGA GCTTACAAGGAGCTTAGGTTGTTGCGGCAGCAATTACGAGCTCAAAAAAACTTAACAGGATATGAGTTGGTGCAATCTCT GCTGCATTACTCGACGCGTGGTCAGGCCTATGTGGACAACTTACGTGCACTGATCAAGCGCCACCATTTAGATGATTTCG ACCAGAGCAAGCTGAGCGCAAATGACACTATTCGCTACCGCTTTACCGATGACGGCAATGGTTAG
Upstream 100 bases:
>100_bases GCTAACTCACTTAGCACAAACTAGTTTTTATTGTTTGGCTGATATATATTGTGGCGGCGCGTCAATATAGATCCCATTTA CTACAATACAGAAATCCTCA
Downstream 100 bases:
>100_bases CGAGTATCTGCTCATCGGCTTAGTTTTTTGCTAGAGGCTCAAACGATAAGATAAAGGTCGCAATGGCGGCCTTTTTTATG CTGATTTTATGAGCATAAAG
Product: BAX protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 314; Mature: 313
Protein sequence:
>314_residues MSFTKILVCMVLLTSPLVLASSSLNLSQNLNAIHSLPLSPEQVQQPYPHVTVKTLRSADQLITEFDKNNYQLGRVEDSNK LPAYFIENLPSDLNALPVSQKTSGFIRLLMPTIKAVNDRILLIRDELSRLSAKPASQWSEAEKLWVQTLSDSYAIKSGDI AELLLHIDIIPAGMVLAQGIDESGWGTSHFAIAANNLYGEHLPHDGGKYLTTPDGHVKVAAFSDLYQSTASYMHNLNTTR AYKELRLLRQQLRAQKNLTGYELVQSLLHYSTRGQAYVDNLRALIKRHHLDDFDQSKLSANDTIRYRFTDDGNG
Sequences:
>Translated_314_residues MSFTKILVCMVLLTSPLVLASSSLNLSQNLNAIHSLPLSPEQVQQPYPHVTVKTLRSADQLITEFDKNNYQLGRVEDSNK LPAYFIENLPSDLNALPVSQKTSGFIRLLMPTIKAVNDRILLIRDELSRLSAKPASQWSEAEKLWVQTLSDSYAIKSGDI AELLLHIDIIPAGMVLAQGIDESGWGTSHFAIAANNLYGEHLPHDGGKYLTTPDGHVKVAAFSDLYQSTASYMHNLNTTR AYKELRLLRQQLRAQKNLTGYELVQSLLHYSTRGQAYVDNLRALIKRHHLDDFDQSKLSANDTIRYRFTDDGNG >Mature_313_residues SFTKILVCMVLLTSPLVLASSSLNLSQNLNAIHSLPLSPEQVQQPYPHVTVKTLRSADQLITEFDKNNYQLGRVEDSNKL PAYFIENLPSDLNALPVSQKTSGFIRLLMPTIKAVNDRILLIRDELSRLSAKPASQWSEAEKLWVQTLSDSYAIKSGDIA ELLLHIDIIPAGMVLAQGIDESGWGTSHFAIAANNLYGEHLPHDGGKYLTTPDGHVKVAAFSDLYQSTASYMHNLNTTRA YKELRLLRQQLRAQKNLTGYELVQSLLHYSTRGQAYVDNLRALIKRHHLDDFDQSKLSANDTIRYRFTDDGNG
Specific function: Unknown
COG id: COG2992
COG function: function code R; Uncharacterized FlgJ-related protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI48994948, Length=206, Percent_Identity=35.9223300970874, Blast_Score=102, Evalue=3e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002901 [H]
Pfam domain/function: PF01832 Glucosaminidase [H]
EC number: NA
Molecular weight: Translated: 35163; Mature: 35032
Theoretical pI: Translated: 7.14; Mature: 7.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFTKILVCMVLLTSPLVLASSSLNLSQNLNAIHSLPLSPEQVQQPYPHVTVKTLRSADQ CCHHHHHHHHHHHHCCHHHCCCCCCHHHCCHHHHCCCCCHHHHHCCCCCHHHHHHHHHHH LITEFDKNNYQLGRVEDSNKLPAYFIENLPSDLNALPVSQKTSGFIRLLMPTIKAVNDRI HHHHHCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE LLIRDELSRLSAKPASQWSEAEKLWVQTLSDSYAIKSGDIAELLLHIDIIPAGMVLAQGI EEEHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC DESGWGTSHFAIAANNLYGEHLPHDGGKYLTTPDGHVKVAAFSDLYQSTASYMHNLNTTR CCCCCCCCEEEEEECCCCCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHHHHHHCCCHHH AYKELRLLRQQLRAQKNLTGYELVQSLLHYSTRGQAYVDNLRALIKRHHLDDFDQSKLSA HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHCCC NDTIRYRFTDDGNG CCEEEEEECCCCCC >Mature Secondary Structure SFTKILVCMVLLTSPLVLASSSLNLSQNLNAIHSLPLSPEQVQQPYPHVTVKTLRSADQ CHHHHHHHHHHHHCCHHHCCCCCCHHHCCHHHHCCCCCHHHHHCCCCCHHHHHHHHHHH LITEFDKNNYQLGRVEDSNKLPAYFIENLPSDLNALPVSQKTSGFIRLLMPTIKAVNDRI HHHHHCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE LLIRDELSRLSAKPASQWSEAEKLWVQTLSDSYAIKSGDIAELLLHIDIIPAGMVLAQGI EEEHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC DESGWGTSHFAIAANNLYGEHLPHDGGKYLTTPDGHVKVAAFSDLYQSTASYMHNLNTTR CCCCCCCCEEEEEECCCCCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHHHHHHCCCHHH AYKELRLLRQQLRAQKNLTGYELVQSLLHYSTRGQAYVDNLRALIKRHHLDDFDQSKLSA HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHCCC NDTIRYRFTDDGNG CCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503; 1544897 [H]