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The map label for this gene is ydaM [H]

Identifier: 167625252

GI number: 167625252

Start: 4080605

End: 4081795

Strand: Reverse

Name: ydaM [H]

Synonym: Shal_3341

Alternate gene names: 167625252

Gene position: 4081795-4080605 (Counterclockwise)

Preceding gene: 167625253

Following gene: 167625251

Centisome position: 78.09

GC content: 45.84

Gene sequence:

>1191_bases
TTGTCTGCTTTTTATCATAGTTGTCGTTACTTTTTTCTTCCTCTTATCTTCACGGCTATTGGCTTGGCTATGAGCGAGAT
CTATCAATCAGATTTGCAGGTTTGGCAGGGAGTGATACAACAGCTTCCCTATTGGTTGCTGCCGGCCTCAATCGCTATTG
CGTTGCAGTTTAACCGTAGCCGCTTAGCTTACTTAGCGGCATTCATGTTGGCTTACTATCTGTGTGTGACCCACTCTTTA
GTTGACTCCGCAGAGTTGGCGCAATACTCACGGCAGATCTTGCTCGGCGGTGCACTCACTATCAGTTGGTTTGCCTTTAT
TAAAGACAGAGGGCTACTATCTCCCCATAGTTTGGTGAGAGTGCTTGGTTGCTGCGTTTGTTTGGCGGCGGGCTTTGGTT
GGCTATGGGTCAACTCGCAATTTAAATTACAGTTGGATGAGGTACTTCCTACGCAAATTAGCATGGATATTAGAGTCTTA
TCCCCTCTGTATCTTGCCTTATTGTTAGTGTTTATTCGTGGAGTTTGGCAGCCTAATTTAGTGAATACGTCTATATTCAT
AACCTTAGTGCTTTGGGCTGTGCACTTTGTTTTTCCGGCCTCTCTTCCATTGTCTATTTCAATGACGACATTGGCCACTA
TTTATATTTTGACTGTGCTCACCGACTCTTATTTCTTGGCTTATCGCGATGAACTCACAGGACTTGCGTCGCGCCGTGCA
CTGTATAACTTAGTGCTTTCTTTAGGGCGTAAATACAGCGTGGCCATGCTCGATATCGATCACTTTAAGAAGTTCAACGA
TACCTATGGCCATGATGTCGGCGATCAGGTATTGAGGTTAGTCGCCAGCAAAATCGCAAAGGTGAGCGGTGGCGGCAAAG
CCTTCCGTTATGGTGGTGAGGAGTTCACCGTTATCTTTCCACGCAAGGATTCATCTGCGGTTCTTGGTTACCTAGAAGAC
GTACGCGAGGCGATAGAGGAATATGATATCGTGCTTCGTAATGAGCAGCGTAAGAGTCAATCAAAAGCTAAACGCGGTAA
AGCTCAGCAAAAATCTCAAACGGTGAGTGTCACTATTTCGATAGGGGTCGCGGAGCATCAAAGTGGTGAAACCTTTGAGC
AAACAATGAAGCGCTCGGATCAAGCCCTGTATAAAGCTAAGAAGAAAGGCCGTAACCAGATCTGCGTGTAA

Upstream 100 bases:

>100_bases
TAAGGTGTTTGTGTAAAAGATGAAGCTTGAGTTGTGAAGCTGGCTGCTTAATGGGCTTATGCAGAGCTAAGGGATTATTC
GATTAATATTGAGGTTTGTT

Downstream 100 bases:

>100_bases
CGAGGTGAGCTGCATACTCTTGTCATTGTATTTCTGTGCGGCCTATTACGCTACTGGGCGATAAATTGGCGTATGGTGCT
GGTCATGCTTTTTAATGACG

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MSAFYHSCRYFFLPLIFTAIGLAMSEIYQSDLQVWQGVIQQLPYWLLPASIAIALQFNRSRLAYLAAFMLAYYLCVTHSL
VDSAELAQYSRQILLGGALTISWFAFIKDRGLLSPHSLVRVLGCCVCLAAGFGWLWVNSQFKLQLDEVLPTQISMDIRVL
SPLYLALLLVFIRGVWQPNLVNTSIFITLVLWAVHFVFPASLPLSISMTTLATIYILTVLTDSYFLAYRDELTGLASRRA
LYNLVLSLGRKYSVAMLDIDHFKKFNDTYGHDVGDQVLRLVASKIAKVSGGGKAFRYGGEEFTVIFPRKDSSAVLGYLED
VREAIEEYDIVLRNEQRKSQSKAKRGKAQQKSQTVSVTISIGVAEHQSGETFEQTMKRSDQALYKAKKKGRNQICV

Sequences:

>Translated_396_residues
MSAFYHSCRYFFLPLIFTAIGLAMSEIYQSDLQVWQGVIQQLPYWLLPASIAIALQFNRSRLAYLAAFMLAYYLCVTHSL
VDSAELAQYSRQILLGGALTISWFAFIKDRGLLSPHSLVRVLGCCVCLAAGFGWLWVNSQFKLQLDEVLPTQISMDIRVL
SPLYLALLLVFIRGVWQPNLVNTSIFITLVLWAVHFVFPASLPLSISMTTLATIYILTVLTDSYFLAYRDELTGLASRRA
LYNLVLSLGRKYSVAMLDIDHFKKFNDTYGHDVGDQVLRLVASKIAKVSGGGKAFRYGGEEFTVIFPRKDSSAVLGYLED
VREAIEEYDIVLRNEQRKSQSKAKRGKAQQKSQTVSVTISIGVAEHQSGETFEQTMKRSDQALYKAKKKGRNQICV
>Mature_395_residues
SAFYHSCRYFFLPLIFTAIGLAMSEIYQSDLQVWQGVIQQLPYWLLPASIAIALQFNRSRLAYLAAFMLAYYLCVTHSLV
DSAELAQYSRQILLGGALTISWFAFIKDRGLLSPHSLVRVLGCCVCLAAGFGWLWVNSQFKLQLDEVLPTQISMDIRVLS
PLYLALLLVFIRGVWQPNLVNTSIFITLVLWAVHFVFPASLPLSISMTTLATIYILTVLTDSYFLAYRDELTGLASRRAL
YNLVLSLGRKYSVAMLDIDHFKKFNDTYGHDVGDQVLRLVASKIAKVSGGGKAFRYGGEEFTVIFPRKDSSAVLGYLEDV
REAIEEYDIVLRNEQRKSQSKAKRGKAQQKSQTVSVTISIGVAEHQSGETFEQTMKRSDQALYKAKKKGRNQICV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=176, Percent_Identity=33.5227272727273, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI1787262, Length=189, Percent_Identity=32.8042328042328, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787802, Length=245, Percent_Identity=30.6122448979592, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI145693134, Length=173, Percent_Identity=31.2138728323699, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI87082007, Length=223, Percent_Identity=30.9417040358744, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1786584, Length=180, Percent_Identity=28.3333333333333, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787056, Length=175, Percent_Identity=31.4285714285714, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787816, Length=186, Percent_Identity=30.1075268817204, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788381, Length=210, Percent_Identity=24.7619047619048, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788956, Length=173, Percent_Identity=31.2138728323699, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI87081977, Length=107, Percent_Identity=32.7102803738318, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 44600; Mature: 44468

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAFYHSCRYFFLPLIFTAIGLAMSEIYQSDLQVWQGVIQQLPYWLLPASIAIALQFNRS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCEEEEEEECHH
RLAYLAAFMLAYYLCVTHSLVDSAELAQYSRQILLGGALTISWFAFIKDRGLLSPHSLVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHH
VLGCCVCLAAGFGWLWVNSQFKLQLDEVLPTQISMDIRVLSPLYLALLLVFIRGVWQPNL
HHHHHHHHHCCCCEEEECCCEEEEHHHHCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCC
VNTSIFITLVLWAVHFVFPASLPLSISMTTLATIYILTVLTDSYFLAYRDELTGLASRRA
CHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LYNLVLSLGRKYSVAMLDIDHFKKFNDTYGHDVGDQVLRLVASKIAKVSGGGKAFRYGGE
HHHHHHHHCCCCEEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCC
EFTVIFPRKDSSAVLGYLEDVREAIEEYDIVLRNEQRKSQSKAKRGKAQQKSQTVSVTIS
EEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHCCCEEEEEEE
IGVAEHQSGETFEQTMKRSDQALYKAKKKGRNQICV
EEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SAFYHSCRYFFLPLIFTAIGLAMSEIYQSDLQVWQGVIQQLPYWLLPASIAIALQFNRS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCEEEEEEECHH
RLAYLAAFMLAYYLCVTHSLVDSAELAQYSRQILLGGALTISWFAFIKDRGLLSPHSLVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHH
VLGCCVCLAAGFGWLWVNSQFKLQLDEVLPTQISMDIRVLSPLYLALLLVFIRGVWQPNL
HHHHHHHHHCCCCEEEECCCEEEEHHHHCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCC
VNTSIFITLVLWAVHFVFPASLPLSISMTTLATIYILTVLTDSYFLAYRDELTGLASRRA
CHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LYNLVLSLGRKYSVAMLDIDHFKKFNDTYGHDVGDQVLRLVASKIAKVSGGGKAFRYGGE
HHHHHHHHCCCCEEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCC
EFTVIFPRKDSSAVLGYLEDVREAIEEYDIVLRNEQRKSQSKAKRGKAQQKSQTVSVTIS
EEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHCCCEEEEEEE
IGVAEHQSGETFEQTMKRSDQALYKAKKKGRNQICV
EEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]