Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

Click here to switch to the map view.

The map label for this gene is 167625188

Identifier: 167625188

GI number: 167625188

Start: 3996365

End: 3996577

Strand: Reverse

Name: 167625188

Synonym: Shal_3276

Alternate gene names: NA

Gene position: 3996577-3996365 (Counterclockwise)

Preceding gene: 167625189

Following gene: 167625185

Centisome position: 76.46

GC content: 46.48

Gene sequence:

>213_bases
ATGAGCCATACCTACAAGATTATCGAACTAACAGGATCGTCTCCCATTAGCTCAGATGAAGCCATCAAGAATGCAATTGC
TGCGGCAAATGAGTCACTCAAGCACTTGAGGTGGTTTGAGGTGGTAGAAACTAGAGGCCATCTAGAGGAGGGCTTAATCG
CTCACTGGCAGGTAACCGTTAAGGTCGGCTTCACCTTAGATCAGAATGCATAA

Upstream 100 bases:

>100_bases
GTGTGAGTGGCGAACTATTTTCCCCATTCTTTGCCCTGACTAACACAGATGTTGTTCTATACTGATTAAGGTCATTATTT
TAATCACCGTTGGGGTCACT

Downstream 100 bases:

>100_bases
CGATTTCTAATGATTTGTTATACAGAGAGAGATGATTAGGCCTACGCATCCCGCGCTAGGCCTTTTTCGATACAGCGAAT
AATCCTTTGGGTTTTGCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MSHTYKIIELTGSSPISSDEAIKNAIAAANESLKHLRWFEVVETRGHLEEGLIAHWQVTVKVGFTLDQNA

Sequences:

>Translated_70_residues
MSHTYKIIELTGSSPISSDEAIKNAIAAANESLKHLRWFEVVETRGHLEEGLIAHWQVTVKVGFTLDQNA
>Mature_69_residues
SHTYKIIELTGSSPISSDEAIKNAIAAANESLKHLRWFEVVETRGHLEEGLIAHWQVTVKVGFTLDQNA

Specific function: Unknown

COG id: COG3360

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 7790; Mature: 7659

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHTYKIIELTGSSPISSDEAIKNAIAAANESLKHLRWFEVVETRGHLEEGLIAHWQVTV
CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE
KVGFTLDQNA
EEEEEECCCC
>Mature Secondary Structure 
SHTYKIIELTGSSPISSDEAIKNAIAAANESLKHLRWFEVVETRGHLEEGLIAHWQVTV
CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE
KVGFTLDQNA
EEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA