Click here to switch to the map view.

The map label for this gene is yfiH [H]

Identifier: 167625159

GI number: 167625159

Start: 3960639

End: 3961385

Strand: Reverse

Name: yfiH [H]

Synonym: Shal_3247

Alternate gene names: 167625159

Gene position: 3961385-3960639 (Counterclockwise)

Preceding gene: 167625160

Following gene: 167625158

Centisome position: 75.79

GC content: 44.44

Gene sequence:

>747_bases
ATGATAAGCAAGCTAGAAAATCAAGCTTGGTTTATCCCTCCAGGGGTAAACCTGGCTTTTTCTACTAAAGAGGGTGGCTG
CAGTTTGCCACCTTTTTCCAGTCTCAATTTAGGACTACATGTTGGCGATGACCCTAAAAAAGTCTTGGCTAACCGTCAGT
TAATCGAGCAACAGCTTAACCTTCCAGCAAAGCCTGCCTGGCTTGAACAAATCCATAGCATTGATGTTGTCGAGGCTGAT
AACACCCAAGTTCATCACGCCGATGCGAGTTATAGCAATAACGCCGATCAGGTTTGTGTTGTGATGACTGCCGATTGCTT
ACCAGTATTATTGTGTGATGAGAATGGCACCGAAGTCGCCGCAGTTCATGCTGGATGGCGCGGTTTGTGTGACGGTATTA
TTGAAGTCGCTGTTAAAAAGTTTAATCATCCTCCGCATGAACTGGTGGCTTATTTAGGGCCTGCTATTGGACCAACAGCG
TTTGAAGTGGGCGCAGAAGTAAAAGTGTTATTTGAAACGAAGCACCCGCAAACAAGCCAGTTTTTTACCTGTCATATCAA
CTCACAAGGCGAGCAAAAATATATGGCAGATATTCAAGGTTTAGCCAGCTTTAGGCTCTCACTGTTAGGTGTAGAGCGTA
TTTTCAAAGATCAACGCTGCACAGTGTCTGATGTAAAAAGTTTTTTCTCCTACCGCCGTGATGGCATAACAGGGCGCATG
GCATCATTTATTTGGCTTAATCGTTAA

Upstream 100 bases:

>100_bases
CTTGTGAAATCATGAGCTGGCAAGCACCGATCCCTGACGATATGGTGAAGCTGACCAGAGCGCTACGTAAAGACACTGAA
GATAATCCTTTAGTTTATTT

Downstream 100 bases:

>100_bases
GTCTGACTTGATTTTGTTTAAATAGTCCCCATCTTTAAGTAACAGATATTCTGCACATTTAGCAGAGTCACCTTTTCTAA
TGTGAATAGAAGTACGAATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MISKLENQAWFIPPGVNLAFSTKEGGCSLPPFSSLNLGLHVGDDPKKVLANRQLIEQQLNLPAKPAWLEQIHSIDVVEAD
NTQVHHADASYSNNADQVCVVMTADCLPVLLCDENGTEVAAVHAGWRGLCDGIIEVAVKKFNHPPHELVAYLGPAIGPTA
FEVGAEVKVLFETKHPQTSQFFTCHINSQGEQKYMADIQGLASFRLSLLGVERIFKDQRCTVSDVKSFFSYRRDGITGRM
ASFIWLNR

Sequences:

>Translated_248_residues
MISKLENQAWFIPPGVNLAFSTKEGGCSLPPFSSLNLGLHVGDDPKKVLANRQLIEQQLNLPAKPAWLEQIHSIDVVEAD
NTQVHHADASYSNNADQVCVVMTADCLPVLLCDENGTEVAAVHAGWRGLCDGIIEVAVKKFNHPPHELVAYLGPAIGPTA
FEVGAEVKVLFETKHPQTSQFFTCHINSQGEQKYMADIQGLASFRLSLLGVERIFKDQRCTVSDVKSFFSYRRDGITGRM
ASFIWLNR
>Mature_248_residues
MISKLENQAWFIPPGVNLAFSTKEGGCSLPPFSSLNLGLHVGDDPKKVLANRQLIEQQLNLPAKPAWLEQIHSIDVVEAD
NTQVHHADASYSNNADQVCVVMTADCLPVLLCDENGTEVAAVHAGWRGLCDGIIEVAVKKFNHPPHELVAYLGPAIGPTA
FEVGAEVKVLFETKHPQTSQFFTCHINSQGEQKYMADIQGLASFRLSLLGVERIFKDQRCTVSDVKSFFSYRRDGITGRM
ASFIWLNR

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family [H]

Homologues:

Organism=Escherichia coli, GI1788945, Length=247, Percent_Identity=53.0364372469636, Blast_Score=252, Evalue=2e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003730
- InterPro:   IPR011324 [H]

Pfam domain/function: PF02578 Cu-oxidase_4 [H]

EC number: NA

Molecular weight: Translated: 27377; Mature: 27377

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISKLENQAWFIPPGVNLAFSTKEGGCSLPPFSSLNLGLHVGDDPKKVLANRQLIEQQLN
CCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHC
LPAKPAWLEQIHSIDVVEADNTQVHHADASYSNNADQVCVVMTADCLPVLLCDENGTEVA
CCCCHHHHHHHHCCEEEECCCCEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEE
AVHAGWRGLCDGIIEVAVKKFNHPPHELVAYLGPAIGPTAFEVGAEVKVLFETKHPQTSQ
EEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHCCCEEEEEEECCCCCCCC
FFTCHINSQGEQKYMADIQGLASFRLSLLGVERIFKDQRCTVSDVKSFFSYRRDGITGRM
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHH
ASFIWLNR
HHEEEECC
>Mature Secondary Structure
MISKLENQAWFIPPGVNLAFSTKEGGCSLPPFSSLNLGLHVGDDPKKVLANRQLIEQQLN
CCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHC
LPAKPAWLEQIHSIDVVEADNTQVHHADASYSNNADQVCVVMTADCLPVLLCDENGTEVA
CCCCHHHHHHHHCCEEEECCCCEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEE
AVHAGWRGLCDGIIEVAVKKFNHPPHELVAYLGPAIGPTAFEVGAEVKVLFETKHPQTSQ
EEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHCCCEEEEEEECCCCCCCC
FFTCHINSQGEQKYMADIQGLASFRLSLLGVERIFKDQRCTVSDVKSFFSYRRDGITGRM
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHH
ASFIWLNR
HHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1906060; 9205837; 9278503; 2066329 [H]