| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is ybeL [H]
Identifier: 167625139
GI number: 167625139
Start: 3933107
End: 3933607
Strand: Reverse
Name: ybeL [H]
Synonym: Shal_3227
Alternate gene names: 167625139
Gene position: 3933607-3933107 (Counterclockwise)
Preceding gene: 167625154
Following gene: 167625132
Centisome position: 75.26
GC content: 43.11
Gene sequence:
>501_bases ATGAGTGAACAAAGTACTGAGCTACTTTCGCTATATCAGGCACTTATTAACCAATTGCAATCTCAATACAATGATGATAA CTCATTGACTGTAAAGAGTTTGTACGCACAAATGCAAACCTGTAAAGAATACTTGGCTATAAAACAGCAGGCGAAGCAAG ATGAGCTCGCTTTAGTCGAACAATTTTTAAAACGTGACATAGCCAGTTTCTTACAGGAAAAAAATGATCACGATTTAAGT CATAGCCCAACTGTTATCACGGCTGAGAGCACTTTATGGCATTGGTTGGGTGAGATAACCGATCGCAGCCAAGTGGAGTG GCATGAGGTGGCGCAAGATTTTAAACATCATGGTTATTATGAAAGTGGCGAGATTGTCGGCCAAGGTACCATGGTGTGCA CGGCCTGCGGCCATGAGTCAAAAATCGAATTCCCTGGCATATTGCCTGACTGTACAGAATGTGACAATAACGAGTTTACC CGAGAGGCCCTAGCACCCTAG
Upstream 100 bases:
>100_bases CGCCCATTGTTTGATCTAGCGCTATTTCAGCGCGAGTGATATCGACATAGAATAAACTAGAAGTGCGTCATTAAAAAGGT TCGTTGAAGGAGTATTTACC
Downstream 100 bases:
>100_bases TTTGGCGTCATAGTTTGGCGCCATGGTATTGATAGGCGTACTTGAGGCAAAAAAATAGCGGCTAGACCAAGCCGCTATGA ACAAGCTAGCAGCCACCTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 166; Mature: 165
Protein sequence:
>166_residues MSEQSTELLSLYQALINQLQSQYNDDNSLTVKSLYAQMQTCKEYLAIKQQAKQDELALVEQFLKRDIASFLQEKNDHDLS HSPTVITAESTLWHWLGEITDRSQVEWHEVAQDFKHHGYYESGEIVGQGTMVCTACGHESKIEFPGILPDCTECDNNEFT REALAP
Sequences:
>Translated_166_residues MSEQSTELLSLYQALINQLQSQYNDDNSLTVKSLYAQMQTCKEYLAIKQQAKQDELALVEQFLKRDIASFLQEKNDHDLS HSPTVITAESTLWHWLGEITDRSQVEWHEVAQDFKHHGYYESGEIVGQGTMVCTACGHESKIEFPGILPDCTECDNNEFT REALAP >Mature_165_residues SEQSTELLSLYQALINQLQSQYNDDNSLTVKSLYAQMQTCKEYLAIKQQAKQDELALVEQFLKRDIASFLQEKNDHDLSH SPTVITAESTLWHWLGEITDRSQVEWHEVAQDFKHHGYYESGEIVGQGTMVCTACGHESKIEFPGILPDCTECDNNEFTR EALAP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786863, Length=157, Percent_Identity=29.2993630573248, Blast_Score=85, Evalue=2e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009912 [H]
Pfam domain/function: PF07295 DUF1451 [H]
EC number: NA
Molecular weight: Translated: 18944; Mature: 18813
Theoretical pI: Translated: 4.34; Mature: 4.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEQSTELLSLYQALINQLQSQYNDDNSLTVKSLYAQMQTCKEYLAIKQQAKQDELALVE CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH QFLKRDIASFLQEKNDHDLSHSPTVITAESTLWHWLGEITDRSQVEWHEVAQDFKHHGYY HHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC ESGEIVGQGTMVCTACGHESKIEFPGILPDCTECDNNEFTREALAP CCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC >Mature Secondary Structure SEQSTELLSLYQALINQLQSQYNDDNSLTVKSLYAQMQTCKEYLAIKQQAKQDELALVE CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH QFLKRDIASFLQEKNDHDLSHSPTVITAESTLWHWLGEITDRSQVEWHEVAQDFKHHGYY HHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC ESGEIVGQGTMVCTACGHESKIEFPGILPDCTECDNNEFTREALAP CCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]