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The map label for this gene is yjjV [H]

Identifier: 167625051

GI number: 167625051

Start: 3831197

End: 3831970

Strand: Reverse

Name: yjjV [H]

Synonym: Shal_3139

Alternate gene names: 167625051

Gene position: 3831970-3831197 (Counterclockwise)

Preceding gene: 167625052

Following gene: 167625050

Centisome position: 73.31

GC content: 39.53

Gene sequence:

>774_bases
ATGAAGCCGATTATTGATAGCCACGCCCATATTGATTTTCCAGTATTTGATGACGACAGAGCAGCGTTATTTGAGAATAT
GCACGCTGTCGGCATTGATAAGGTTTTGATCCCAGGAGTGTGCCCTCTGCAATGGCAAAAGCAAATCGCTGTGGCTCGGC
AGTATAACTGCCTTTATAGTTTGGGGATCCATCCTTGGTATTGCGAAACTGCAACTGTTAAGAATATTGAAGACTTACGT
GATTTACTTATCCGCTATAAAGATGATTCTCAGCTAGTTGCTGTCGGTGAATGTGGTTTAGATAAATTACATAAAAGTAA
TTTCATAACACAAATGAATTTATTTAGAGTTCAAGTTTCTTTGGCTAAGGAGTTTGATTTACCACTCATTATTCATGTGG
TCAAAGCTCATGAAGAGATTTTAAAGTGCCTTAAAAGCGAGAAACCATCGAGAAAAGGGGTCATTCATGGCTTTTATGGT
GGCCCTCAGTTGGCACTGCAGTATGTTAATTTAGGCTACAAGCTAGGCATAGGAGGCTTGTTGCTCAATGATAATGCACC
TAAGTTGCAACAAACCGTGGCAGAATTACCGGTAGATTCATTCGTATTAGAAACAGATTCACCTGCGATGGCGCCAAAAA
ATGGCCAAAATAGTTATAACACGCCACTGCTTTTGCCCGATATCCTCAATAAAATGGCACATTTACAAAAAAAATCATCC
GTTCTTATTTCAGAACAGATGTTTTCTAATGTCACGCAACTCTTTGACCTTTAG

Upstream 100 bases:

>100_bases
TCAGTTGGCAAACAAAAAAGCCGAAGTTGAACCGCCGTCGCTATCTTCAGTCAATCCTGAAGCTTGTTGCAAACCTATTA
GAAAGTAAAGGGCGACACTC

Downstream 100 bases:

>100_bases
TTTTTTTCTGATTAAACAGATGTTTCTCGCATCGGAAATTCCAACAAAATCATTGAAATAAAACCTCAAAAACTTGATCA
ATACGACGCTTTTACCGATG

Product: TatD-like deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MKPIIDSHAHIDFPVFDDDRAALFENMHAVGIDKVLIPGVCPLQWQKQIAVARQYNCLYSLGIHPWYCETATVKNIEDLR
DLLIRYKDDSQLVAVGECGLDKLHKSNFITQMNLFRVQVSLAKEFDLPLIIHVVKAHEEILKCLKSEKPSRKGVIHGFYG
GPQLALQYVNLGYKLGIGGLLLNDNAPKLQQTVAELPVDSFVLETDSPAMAPKNGQNSYNTPLLLPDILNKMAHLQKKSS
VLISEQMFSNVTQLFDL

Sequences:

>Translated_257_residues
MKPIIDSHAHIDFPVFDDDRAALFENMHAVGIDKVLIPGVCPLQWQKQIAVARQYNCLYSLGIHPWYCETATVKNIEDLR
DLLIRYKDDSQLVAVGECGLDKLHKSNFITQMNLFRVQVSLAKEFDLPLIIHVVKAHEEILKCLKSEKPSRKGVIHGFYG
GPQLALQYVNLGYKLGIGGLLLNDNAPKLQQTVAELPVDSFVLETDSPAMAPKNGQNSYNTPLLLPDILNKMAHLQKKSS
VLISEQMFSNVTQLFDL
>Mature_257_residues
MKPIIDSHAHIDFPVFDDDRAALFENMHAVGIDKVLIPGVCPLQWQKQIAVARQYNCLYSLGIHPWYCETATVKNIEDLR
DLLIRYKDDSQLVAVGECGLDKLHKSNFITQMNLFRVQVSLAKEFDLPLIIHVVKAHEEILKCLKSEKPSRKGVIHGFYG
GPQLALQYVNLGYKLGIGGLLLNDNAPKLQQTVAELPVDSFVLETDSPAMAPKNGQNSYNTPLLLPDILNKMAHLQKKSS
VLISEQMFSNVTQLFDL

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI226061595, Length=233, Percent_Identity=29.1845493562232, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI110349734, Length=265, Percent_Identity=26.7924528301887, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI110349730, Length=265, Percent_Identity=26.4150943396226, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI226061853, Length=271, Percent_Identity=27.3062730627306, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI14042943, Length=256, Percent_Identity=25, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI226061614, Length=258, Percent_Identity=25.1937984496124, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI225903439, Length=224, Percent_Identity=24.5535714285714, Blast_Score=68, Evalue=8e-12,
Organism=Escherichia coli, GI87082439, Length=257, Percent_Identity=35.0194552529183, Blast_Score=154, Evalue=4e-39,
Organism=Escherichia coli, GI48994985, Length=257, Percent_Identity=26.8482490272374, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1787342, Length=267, Percent_Identity=25.8426966292135, Blast_Score=94, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17559024, Length=219, Percent_Identity=29.6803652968037, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI71980746, Length=223, Percent_Identity=28.6995515695067, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI221330018, Length=228, Percent_Identity=30.7017543859649, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24648690, Length=291, Percent_Identity=24.7422680412371, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24586117, Length=200, Percent_Identity=32, Blast_Score=74, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28850; Mature: 28850

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS01137 TATD_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPIIDSHAHIDFPVFDDDRAALFENMHAVGIDKVLIPGVCPLQWQKQIAVARQYNCLYS
CCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHEEE
LGIHPWYCETATVKNIEDLRDLLIRYKDDSQLVAVGECGLDKLHKSNFITQMNLFRVQVS
CCCCCEEECCCCCCCHHHHHHHHHEECCCCCEEEECCCCHHHHHHHCCHHHHHHHEEEEE
LAKEFDLPLIIHVVKAHEEILKCLKSEKPSRKGVIHGFYGGPQLALQYVNLGYKLGIGGL
HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHCCEEECCCEE
LLNDNAPKLQQTVAELPVDSFVLETDSPAMAPKNGQNSYNTPLLLPDILNKMAHLQKKSS
EECCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHH
VLISEQMFSNVTQLFDL
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKPIIDSHAHIDFPVFDDDRAALFENMHAVGIDKVLIPGVCPLQWQKQIAVARQYNCLYS
CCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHEEE
LGIHPWYCETATVKNIEDLRDLLIRYKDDSQLVAVGECGLDKLHKSNFITQMNLFRVQVS
CCCCCEEECCCCCCCHHHHHHHHHEECCCCCEEEECCCCHHHHHHHCCHHHHHHHEEEEE
LAKEFDLPLIIHVVKAHEEILKCLKSEKPSRKGVIHGFYGGPQLALQYVNLGYKLGIGGL
HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHCCEEECCCEE
LLNDNAPKLQQTVAELPVDSFVLETDSPAMAPKNGQNSYNTPLLLPDILNKMAHLQKKSS
EECCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHH
VLISEQMFSNVTQLFDL
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]