| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is yuxL [H]
Identifier: 167624981
GI number: 167624981
Start: 3742935
End: 3745742
Strand: Reverse
Name: yuxL [H]
Synonym: Shal_3068
Alternate gene names: 167624981
Gene position: 3745742-3742935 (Counterclockwise)
Preceding gene: 167624983
Following gene: 167624975
Centisome position: 71.66
GC content: 41.99
Gene sequence:
>2808_bases ATGAGGAAGACCTTGAAGTCACTACCTATAAAGTCATTATTGCTATTTTCGACGTGCTTGCTGTCTGCAAACTTGATGGC GGCCACAAATAGCATCACTCCCGACGATATCATGCGGTTCGAATCGCTTAAAAAGCCTGTTATTTCAGATATGGGCAATA TGCTCGCAGTTGAAGTAGCACCAGATCGTGGTGATAGCCATGGTTTAGTCAAAAGCTTAGTTGCGAATAAGCAGTTTAGT GTAAAAGGAGGCAGTAAGCCAAAAATCAGCCATGACGGTCGATTTGTCGCATTTGTTGATGTAATCCCTTTGCTTGATTC TGAGCAGGCGAATAAGAAAGCTAAAAAGAAACTCAAGTCAGGTTTAGTTTTGTTAGATACCTCAACAGGAAAAGAAATAC GTTATGAGCGTGTTAAATCTTTTGAATTCAACGAGACGGGTAGCCATTTAGCCATTTGGTTTGAAGCTGACGAAAATAAA AAAGATGAAAAATCAGCCGATAAGCCTGAAAACGGTAACAAAGAGCTAAAAGTTGATGATTATGATAAAGGCTCACTTGT CGAGTTAGTAACTCTTAATAATTTAAAATCAATTAAATTTAAAGATGTTACTGCCTTTAACTTTGATAAGTCCGGTATTC ATTTTGCCTTAGCAATAAATAATATTGAGGCAAATAAGCATGAACTGAGACTGGTTAAACTTGCTGACAATACAGCATCG ATTATACAGAGTTTAAAGCAGCAACAAGTAGGCTCAATTGCACTGAGTAACGATGGTAAGTACATAGGTTTTACCTATGG TGACGCTCAAGCCGCCCCTTATGGTCGTGAATATCAGTTATCCTTATTGGATCTTGAGAACAACAAGCTTACCGCAGCGC CAAAATCACCAGAATGGACCTTGAATCGCTACGCCGAATTACGCTTTTCTGATGATAGCCAGCGCTTGTTTTTTGGTCGC GTACCACAGGTGAGTCAGCAGTTAGAAATCGCCAAGGTTGAAAGTCAGGCCGATCTATTTGATAAAGAAGTGATTACTTC TAGTCGTGCATTAAGAGTGTGGCATGGTGATGATCCCCGTATTAAGCCTCATGAAGTTAAGCAGTATAAAAAAGAGTTAA AACGCACCTATTTAGCGGTATTACATATCAATGGTAATAACCTTGTGCAACTTGGCGACCTTATAGTGCCGGATGTTGAA GTGCAGCAACAGCAACGCTTTGCACTAGCAAGCTCTGATCTGCCTTATCGTAAGATGATCACTTGGGCTGGTTTCTATCG TGATTTTTACTTGGTTGATCTCAATACTGGTCGCAAGATCTCATTACTCACTCAGCAAAGCACCTCTGAAGAACCGACAT TATCTCCAGGCGAAAAGTTTGTCTCATATTACTTACATGGCAACGTATTTTTATATGAGATAGCGCAGGATAGGCGCACT AATGTCACTAAAACGTTAGGTGTTTCTTTTGCCGATGAAGATCATGATTACCCGTCAAATGCTCCAAGCTATGGTTTAGG GCCTTGGATTGCTGGCGATACTGGATTATTGATTTATGACAAATTTGATATTTGGCAGGTCAGTACCACATCCCATGATG CATTCAAGCTAACTGCTGGGGAAGGCCGCAAGCACGGTGTCCAGTATCGTGTGACTGGACTGGTTAAAGATAAGGAGTAT CCAAGCGTACTTAAGGGGGATGAGAAAGTACTGCTGCATGGTTACAGTGATATCACGAAAGGTGATGGCTTTTATCAAGC TCAAATCGGTGTTGCAGGTGTCACGCCATTAATGGATGGTGACTATAAACTTAAGTTACTCGCGCGCAGTAAAGATGCTG AGACGATTCTCTATTCAAAGGAGCAGTATGATCGGTTCCCAGATCTCTATAGTGGCAGTTATGATTCTCCACAAGATGCC ACCCGTCAAACGAACCTAGACAAGCAGCGTGAAGCCTTTAACTGGAGCCAGTCAGAGTTAGTGCAGTGGACTAATGGCGA TGGTAAACCACTTGATGGTGTATTGATTAAGCCAACCAATTACGTTGAAGGTAAGCGTTATCCTGTACTGGTTTATTTTT ATCGTTTTATGAGTGATAGATTGCATGCTTTCCCGCAGATGAAGATTAACCATAGGCCAAATTTTGCCTGGTTTGCTGAC AACGGTTATGCCATATTCCTACCAGATATTCGCTTTGAAGTGGGTTACCCTGGTGATTCATCAGTGCAAGCATTGACATC AGGTGTGCAGCATTTGATTGATATTGGTATTGCCGATCCAAAGGCTGTGGGGATCCAAGGTCACTCTTGGGGCGGTTATC AAACAGCATTTGCAGTAACTAAAACCAATATTTTTAAGGCTGCTGTAACTGGCGCGCCAGTGTCGAATATGACCAGTGCT TATAGCGGTATTCGTCACGGTAGTGGTCTAGCAAGACAGTTCCAGTATGAAACGGGTCAAAGCCGCATTGGAGAAAGTTT ATTTAAGTTCCCGCAAAAGTATATTGAGAACTCTCCAGTTTTCTATGTTGAACGCATTAAAACACCTATGATGATCATGT TTGGTGATAAAGATGATGCGGTGCCGTGGGAGCAGGGGGTTGAGTTGTATTTAGCGATGCGCCGAGCGGGTAAAGATGTG GTGTTCTTACAGTATCAAGATGAGCCTCATCACCTTAAAAAATACCCCAATAAACTCGATTACAGCATTCGCATGATGGA ATATTTCGATCATTACTTAAAAGGGACACCTGCACCGAAGTGGTTGAGCGAAGGTGAGGCCTATACAGAGAATAAGAAGG CTGATTAA
Upstream 100 bases:
>100_bases TCACGTTTTTTTCTGTAGGGTAACTTGCATAAATAACTGCTTATGACGATGATTGTTCGTTAGAAGGTTAAAAAGTCTAC TTTAGTCTAATAAAATAATA
Downstream 100 bases:
>100_bases TTCATTTGTTCGAAGCAATAACGGGCTAGTTTTTGCCTGTTCGACTAATTGCTAACTTATAGAGGGTTAGCGAATAGAGA GTGAGTTGATAAAGTGCTAA
Product: peptidase S9 prolyl oligopeptidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 935; Mature: 935
Protein sequence:
>935_residues MRKTLKSLPIKSLLLFSTCLLSANLMAATNSITPDDIMRFESLKKPVISDMGNMLAVEVAPDRGDSHGLVKSLVANKQFS VKGGSKPKISHDGRFVAFVDVIPLLDSEQANKKAKKKLKSGLVLLDTSTGKEIRYERVKSFEFNETGSHLAIWFEADENK KDEKSADKPENGNKELKVDDYDKGSLVELVTLNNLKSIKFKDVTAFNFDKSGIHFALAINNIEANKHELRLVKLADNTAS IIQSLKQQQVGSIALSNDGKYIGFTYGDAQAAPYGREYQLSLLDLENNKLTAAPKSPEWTLNRYAELRFSDDSQRLFFGR VPQVSQQLEIAKVESQADLFDKEVITSSRALRVWHGDDPRIKPHEVKQYKKELKRTYLAVLHINGNNLVQLGDLIVPDVE VQQQQRFALASSDLPYRKMITWAGFYRDFYLVDLNTGRKISLLTQQSTSEEPTLSPGEKFVSYYLHGNVFLYEIAQDRRT NVTKTLGVSFADEDHDYPSNAPSYGLGPWIAGDTGLLIYDKFDIWQVSTTSHDAFKLTAGEGRKHGVQYRVTGLVKDKEY PSVLKGDEKVLLHGYSDITKGDGFYQAQIGVAGVTPLMDGDYKLKLLARSKDAETILYSKEQYDRFPDLYSGSYDSPQDA TRQTNLDKQREAFNWSQSELVQWTNGDGKPLDGVLIKPTNYVEGKRYPVLVYFYRFMSDRLHAFPQMKINHRPNFAWFAD NGYAIFLPDIRFEVGYPGDSSVQALTSGVQHLIDIGIADPKAVGIQGHSWGGYQTAFAVTKTNIFKAAVTGAPVSNMTSA YSGIRHGSGLARQFQYETGQSRIGESLFKFPQKYIENSPVFYVERIKTPMMIMFGDKDDAVPWEQGVELYLAMRRAGKDV VFLQYQDEPHHLKKYPNKLDYSIRMMEYFDHYLKGTPAPKWLSEGEAYTENKKAD
Sequences:
>Translated_935_residues MRKTLKSLPIKSLLLFSTCLLSANLMAATNSITPDDIMRFESLKKPVISDMGNMLAVEVAPDRGDSHGLVKSLVANKQFS VKGGSKPKISHDGRFVAFVDVIPLLDSEQANKKAKKKLKSGLVLLDTSTGKEIRYERVKSFEFNETGSHLAIWFEADENK KDEKSADKPENGNKELKVDDYDKGSLVELVTLNNLKSIKFKDVTAFNFDKSGIHFALAINNIEANKHELRLVKLADNTAS IIQSLKQQQVGSIALSNDGKYIGFTYGDAQAAPYGREYQLSLLDLENNKLTAAPKSPEWTLNRYAELRFSDDSQRLFFGR VPQVSQQLEIAKVESQADLFDKEVITSSRALRVWHGDDPRIKPHEVKQYKKELKRTYLAVLHINGNNLVQLGDLIVPDVE VQQQQRFALASSDLPYRKMITWAGFYRDFYLVDLNTGRKISLLTQQSTSEEPTLSPGEKFVSYYLHGNVFLYEIAQDRRT NVTKTLGVSFADEDHDYPSNAPSYGLGPWIAGDTGLLIYDKFDIWQVSTTSHDAFKLTAGEGRKHGVQYRVTGLVKDKEY PSVLKGDEKVLLHGYSDITKGDGFYQAQIGVAGVTPLMDGDYKLKLLARSKDAETILYSKEQYDRFPDLYSGSYDSPQDA TRQTNLDKQREAFNWSQSELVQWTNGDGKPLDGVLIKPTNYVEGKRYPVLVYFYRFMSDRLHAFPQMKINHRPNFAWFAD NGYAIFLPDIRFEVGYPGDSSVQALTSGVQHLIDIGIADPKAVGIQGHSWGGYQTAFAVTKTNIFKAAVTGAPVSNMTSA YSGIRHGSGLARQFQYETGQSRIGESLFKFPQKYIENSPVFYVERIKTPMMIMFGDKDDAVPWEQGVELYLAMRRAGKDV VFLQYQDEPHHLKKYPNKLDYSIRMMEYFDHYLKGTPAPKWLSEGEAYTENKKAD >Mature_935_residues MRKTLKSLPIKSLLLFSTCLLSANLMAATNSITPDDIMRFESLKKPVISDMGNMLAVEVAPDRGDSHGLVKSLVANKQFS VKGGSKPKISHDGRFVAFVDVIPLLDSEQANKKAKKKLKSGLVLLDTSTGKEIRYERVKSFEFNETGSHLAIWFEADENK KDEKSADKPENGNKELKVDDYDKGSLVELVTLNNLKSIKFKDVTAFNFDKSGIHFALAINNIEANKHELRLVKLADNTAS IIQSLKQQQVGSIALSNDGKYIGFTYGDAQAAPYGREYQLSLLDLENNKLTAAPKSPEWTLNRYAELRFSDDSQRLFFGR VPQVSQQLEIAKVESQADLFDKEVITSSRALRVWHGDDPRIKPHEVKQYKKELKRTYLAVLHINGNNLVQLGDLIVPDVE VQQQQRFALASSDLPYRKMITWAGFYRDFYLVDLNTGRKISLLTQQSTSEEPTLSPGEKFVSYYLHGNVFLYEIAQDRRT NVTKTLGVSFADEDHDYPSNAPSYGLGPWIAGDTGLLIYDKFDIWQVSTTSHDAFKLTAGEGRKHGVQYRVTGLVKDKEY PSVLKGDEKVLLHGYSDITKGDGFYQAQIGVAGVTPLMDGDYKLKLLARSKDAETILYSKEQYDRFPDLYSGSYDSPQDA TRQTNLDKQREAFNWSQSELVQWTNGDGKPLDGVLIKPTNYVEGKRYPVLVYFYRFMSDRLHAFPQMKINHRPNFAWFAD NGYAIFLPDIRFEVGYPGDSSVQALTSGVQHLIDIGIADPKAVGIQGHSWGGYQTAFAVTKTNIFKAAVTGAPVSNMTSA YSGIRHGSGLARQFQYETGQSRIGESLFKFPQKYIENSPVFYVERIKTPMMIMFGDKDDAVPWEQGVELYLAMRRAGKDV VFLQYQDEPHHLKKYPNKLDYSIRMMEYFDHYLKGTPAPKWLSEGEAYTENKKAD
Specific function: Unknown
COG id: COG1506
COG function: function code E; Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S9B family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011042 - InterPro: IPR011659 - InterPro: IPR001375 [H]
Pfam domain/function: PF07676 PD40; PF00326 Peptidase_S9 [H]
EC number: NA
Molecular weight: Translated: 105549; Mature: 105549
Theoretical pI: Translated: 7.92; Mature: 7.92
Prosite motif: PS00626 RCC1_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKTLKSLPIKSLLLFSTCLLSANLMAATNSITPDDIMRFESLKKPVISDMGNMLAVEVA CCCCHHHCCHHHHHHHHHHHHHCCHHEECCCCCHHHHHHHHHHCCHHHHCCCCEEEEEEC PDRGDSHGLVKSLVANKQFSVKGGSKPKISHDGRFVAFVDVIPLLDSEQANKKAKKKLKS CCCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHC GLVLLDTSTGKEIRYERVKSFEFNETGSHLAIWFEADENKKDEKSADKPENGNKELKVDD CEEEEECCCCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHCCCCCCCCCCEEEECC YDKGSLVELVTLNNLKSIKFKDVTAFNFDKSGIHFALAINNIEANKHELRLVKLADNTAS CCCCCEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCHHH IIQSLKQQQVGSIALSNDGKYIGFTYGDAQAAPYGREYQLSLLDLENNKLTAAPKSPEWT HHHHHHHHHCCEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCEEEECCCCCCCC LNRYAELRFSDDSQRLFFGRVPQVSQQLEIAKVESQADLFDKEVITSSRALRVWHGDDPR EEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC IKPHEVKQYKKELKRTYLAVLHINGNNLVQLGDLIVPDVEVQQQQRFALASSDLPYRKMI CCHHHHHHHHHHHHHEEEEEEEECCCCEEEECCEECCCCHHHHHHHHHHHCCCCCHHHHH TWAGFYRDFYLVDLNTGRKISLLTQQSTSEEPTLSPGEKFVSYYLHGNVFLYEIAQDRRT HHHHHCEEEEEEECCCCCEEEEEECCCCCCCCCCCCHHHHEEEEEECCEEEEEECCCCCC NVTKTLGVSFADEDHDYPSNAPSYGLGPWIAGDTGLLIYDKFDIWQVSTTSHDAFKLTAG CCCCEECCEECCCCCCCCCCCCCCCCCCEECCCCCEEEEEECCEEEEECCCCCEEEEECC EGRKHGVQYRVTGLVKDKEYPSVLKGDEKVLLHGYSDITKGDGFYQAQIGVAGVTPLMDG CCCCCCEEEEEEEEEECCCCCHHHCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCEECC DYKLKLLARSKDAETILYSKEQYDRFPDLYSGSYDSPQDATRQTNLDKQREAFNWSQSEL CEEEEEEEECCCCCEEEECCHHHHCCCCHHCCCCCCCHHHHHHCCCHHHHHHCCCCHHHE VQWTNGDGKPLDGVLIKPTNYVEGKRYPVLVYFYRFMSDRLHAFPQMKINHRPNFAWFAD EEEECCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCEEEEEC NGYAIFLPDIRFEVGYPGDSSVQALTSGVQHLIDIGIADPKAVGIQGHSWGGYQTAFAVT CCEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEEEE KTNIFKAAVTGAPVSNMTSAYSGIRHGSGLARQFQYETGQSRIGESLFKFPQKYIENSPV ECCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCE FYVERIKTPMMIMFGDKDDAVPWEQGVELYLAMRRAGKDVVFLQYQDEPHHLKKYPNKLD EEEEECCCCEEEEECCCCCCCCHHHHHHHEEHHHHCCCCEEEEEECCCCHHHHHCCCCCC YSIRMMEYFDHYLKGTPAPKWLSEGEAYTENKKAD CEEHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCC >Mature Secondary Structure MRKTLKSLPIKSLLLFSTCLLSANLMAATNSITPDDIMRFESLKKPVISDMGNMLAVEVA CCCCHHHCCHHHHHHHHHHHHHCCHHEECCCCCHHHHHHHHHHCCHHHHCCCCEEEEEEC PDRGDSHGLVKSLVANKQFSVKGGSKPKISHDGRFVAFVDVIPLLDSEQANKKAKKKLKS CCCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHC GLVLLDTSTGKEIRYERVKSFEFNETGSHLAIWFEADENKKDEKSADKPENGNKELKVDD CEEEEECCCCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHCCCCCCCCCCEEEECC YDKGSLVELVTLNNLKSIKFKDVTAFNFDKSGIHFALAINNIEANKHELRLVKLADNTAS CCCCCEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCHHH IIQSLKQQQVGSIALSNDGKYIGFTYGDAQAAPYGREYQLSLLDLENNKLTAAPKSPEWT HHHHHHHHHCCEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCEEEECCCCCCCC LNRYAELRFSDDSQRLFFGRVPQVSQQLEIAKVESQADLFDKEVITSSRALRVWHGDDPR EEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC IKPHEVKQYKKELKRTYLAVLHINGNNLVQLGDLIVPDVEVQQQQRFALASSDLPYRKMI CCHHHHHHHHHHHHHEEEEEEEECCCCEEEECCEECCCCHHHHHHHHHHHCCCCCHHHHH TWAGFYRDFYLVDLNTGRKISLLTQQSTSEEPTLSPGEKFVSYYLHGNVFLYEIAQDRRT HHHHHCEEEEEEECCCCCEEEEEECCCCCCCCCCCCHHHHEEEEEECCEEEEEECCCCCC NVTKTLGVSFADEDHDYPSNAPSYGLGPWIAGDTGLLIYDKFDIWQVSTTSHDAFKLTAG CCCCEECCEECCCCCCCCCCCCCCCCCCEECCCCCEEEEEECCEEEEECCCCCEEEEECC EGRKHGVQYRVTGLVKDKEYPSVLKGDEKVLLHGYSDITKGDGFYQAQIGVAGVTPLMDG CCCCCCEEEEEEEEEECCCCCHHHCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCEECC DYKLKLLARSKDAETILYSKEQYDRFPDLYSGSYDSPQDATRQTNLDKQREAFNWSQSEL CEEEEEEEECCCCCEEEECCHHHHCCCCHHCCCCCCCHHHHHHCCCHHHHHHCCCCHHHE VQWTNGDGKPLDGVLIKPTNYVEGKRYPVLVYFYRFMSDRLHAFPQMKINHRPNFAWFAD EEEECCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCEEEEEC NGYAIFLPDIRFEVGYPGDSSVQALTSGVQHLIDIGIADPKAVGIQGHSWGGYQTAFAVT CCEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEEEE KTNIFKAAVTGAPVSNMTSAYSGIRHGSGLARQFQYETGQSRIGESLFKFPQKYIENSPV ECCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCE FYVERIKTPMMIMFGDKDDAVPWEQGVELYLAMRRAGKDVVFLQYQDEPHHLKKYPNKLD EEEEECCCCEEEEECCCCCCCCHHHHHHHEEHHHHCCCCEEEEEECCCCHHHHHCCCCCC YSIRMMEYFDHYLKGTPAPKWLSEGEAYTENKKAD CEEHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377; 3098560 [H]