| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is pstS [H]
Identifier: 167624970
GI number: 167624970
Start: 3727989
End: 3728960
Strand: Reverse
Name: pstS [H]
Synonym: Shal_3057
Alternate gene names: 167624970
Gene position: 3728960-3727989 (Counterclockwise)
Preceding gene: 167624971
Following gene: 167624968
Centisome position: 71.34
GC content: 45.16
Gene sequence:
>972_bases ATGAAACTGAAACAACTTGTTGGCGCGGTAAGTTTTACTGCAGCGACTGTATTTTCTACAGCATCAATGGCTGAAATTGA CCAGTCTTTACCCACTTACGAAAAGACAAGCGGCGTGTCAGGTAATTTATCTTCCGTTGGCTCAGATACATTAGCGAACA TGATGACGCTTTGGGCTGAAGATTTTAAACAACTCTATCCAAACGTTAATATCCAAATTCAAGCTGCAGGGTCTTCTACT GCGCCACCGGCATTGACTGAAGGAACTTCTCAATTCGGTCCTATGAGCCGTAAGATGAAGCCGAATGAAGTTGAGGCATT TGAAAAGCATTATGGCTATCAGCCAACACCTATCCGCGTCGCAATTGACGCGCTCGCAGTATTTGTCCATAAAGATAACC CGATTGAAGGCATGAGCATCGAGCAGATCGACGGCATCTTCTCTTCTACAGATAAGTGCGGTGGCGGCGATGTGACACGC TGGGGACAAGTTGGCCTTGAGGGCAGCTGGACTGCGAGAGATATACAACTTTATGGCCGTAACTCTGTATCAGGTACTTA CGGTTACTTTAAAAAGAAAGCACTGTGTAAAGGTGATTTCAAAGCAAACGTAAACGAGCAGCCAGGCTCAGCCTCTGTCG TACAGGCAGTCTCTCAATCACTTAATTCGATTGGTTACTCTGGCATTGGTTATAAGACTGCTGGCGTTAAAGCGGTTGCG ATTTCTAAGAAAGGAACTAACTATATACCTGCAACGGCAGACAATGCGGCAACGGGTAAGTATCCACTATCTCGTTACCT CTACGTTTATGTGAATAAACACCCAAACAAAGCTCTATCGCCAATGGATCGAGAGTTCATTCGCTACGTGCTTTCTAAGC AAGGTCAGCAAATTGTAGAAAAAGACGGTTATGTTGCACTGCCACGCAGTGTTATCGCTAAAGACTTAGCTAAAGTGGGG ATCCGTCTTTAG
Upstream 100 bases:
>100_bases TTGTCATCTAAGTGTCACTTATGAGTAATAGACTTGTCATCAATGGAGTCAATACTGACAGCGTTTTAAAAACGAAGATA GATAAACACTGGAGCAAAGA
Downstream 100 bases:
>100_bases TCACTAATTAACCTCGATGATACAAGTGAACATTAATGAAAAGGCCTCTATTGAGGCTTTTTTGTTTTCGTGATTTAGTC GGGACGCAACATAGGTAGTA
Product: phosphate-binding protein
Products: NA
Alternate protein names: PBP [H]
Number of amino acids: Translated: 323; Mature: 323
Protein sequence:
>323_residues MKLKQLVGAVSFTAATVFSTASMAEIDQSLPTYEKTSGVSGNLSSVGSDTLANMMTLWAEDFKQLYPNVNIQIQAAGSST APPALTEGTSQFGPMSRKMKPNEVEAFEKHYGYQPTPIRVAIDALAVFVHKDNPIEGMSIEQIDGIFSSTDKCGGGDVTR WGQVGLEGSWTARDIQLYGRNSVSGTYGYFKKKALCKGDFKANVNEQPGSASVVQAVSQSLNSIGYSGIGYKTAGVKAVA ISKKGTNYIPATADNAATGKYPLSRYLYVYVNKHPNKALSPMDREFIRYVLSKQGQQIVEKDGYVALPRSVIAKDLAKVG IRL
Sequences:
>Translated_323_residues MKLKQLVGAVSFTAATVFSTASMAEIDQSLPTYEKTSGVSGNLSSVGSDTLANMMTLWAEDFKQLYPNVNIQIQAAGSST APPALTEGTSQFGPMSRKMKPNEVEAFEKHYGYQPTPIRVAIDALAVFVHKDNPIEGMSIEQIDGIFSSTDKCGGGDVTR WGQVGLEGSWTARDIQLYGRNSVSGTYGYFKKKALCKGDFKANVNEQPGSASVVQAVSQSLNSIGYSGIGYKTAGVKAVA ISKKGTNYIPATADNAATGKYPLSRYLYVYVNKHPNKALSPMDREFIRYVLSKQGQQIVEKDGYVALPRSVIAKDLAKVG IRL >Mature_323_residues MKLKQLVGAVSFTAATVFSTASMAEIDQSLPTYEKTSGVSGNLSSVGSDTLANMMTLWAEDFKQLYPNVNIQIQAAGSST APPALTEGTSQFGPMSRKMKPNEVEAFEKHYGYQPTPIRVAIDALAVFVHKDNPIEGMSIEQIDGIFSSTDKCGGGDVTR WGQVGLEGSWTARDIQLYGRNSVSGTYGYFKKKALCKGDFKANVNEQPGSASVVQAVSQSLNSIGYSGIGYKTAGVKAVA ISKKGTNYIPATADNAATGKYPLSRYLYVYVNKHPNKALSPMDREFIRYVLSKQGQQIVEKDGYVALPRSVIAKDLAKVG IRL
Specific function: Part of the ABC transporter complex pstSACB involved in phosphate import [H]
COG id: COG0226
COG function: function code P; ABC-type phosphate transport system, periplasmic component
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pstS family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011862 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34813; Mature: 34813
Theoretical pI: Translated: 9.59; Mature: 9.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLKQLVGAVSFTAATVFSTASMAEIDQSLPTYEKTSGVSGNLSSVGSDTLANMMTLWAE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCHHHCCHHHHHHHHHHHHH DFKQLYPNVNIQIQAAGSSTAPPALTEGTSQFGPMSRKMKPNEVEAFEKHYGYQPTPIRV HHHHHCCCCCEEEEECCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHH AIDALAVFVHKDNPIEGMSIEQIDGIFSSTDKCGGGDVTRWGQVGLEGSWTARDIQLYGR EEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCEEEEEEECC NSVSGTYGYFKKKALCKGDFKANVNEQPGSASVVQAVSQSLNSIGYSGIGYKTAGVKAVA CCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCEEEEE ISKKGTNYIPATADNAATGKYPLSRYLYVYVNKHPNKALSPMDREFIRYVLSKQGQQIVE EECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCHHHHH KDGYVALPRSVIAKDLAKVGIRL CCCCEECCHHHHHHHHHHHCCCC >Mature Secondary Structure MKLKQLVGAVSFTAATVFSTASMAEIDQSLPTYEKTSGVSGNLSSVGSDTLANMMTLWAE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCHHHCCHHHHHHHHHHHHH DFKQLYPNVNIQIQAAGSSTAPPALTEGTSQFGPMSRKMKPNEVEAFEKHYGYQPTPIRV HHHHHCCCCCEEEEECCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHH AIDALAVFVHKDNPIEGMSIEQIDGIFSSTDKCGGGDVTRWGQVGLEGSWTARDIQLYGR EEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCEEEEEEECC NSVSGTYGYFKKKALCKGDFKANVNEQPGSASVVQAVSQSLNSIGYSGIGYKTAGVKAVA CCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCEEEEE ISKKGTNYIPATADNAATGKYPLSRYLYVYVNKHPNKALSPMDREFIRYVLSKQGQQIVE EECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCHHHHH KDGYVALPRSVIAKDLAKVGIRL CCCCEECCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA