| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is fct [H]
Identifier: 167624935
GI number: 167624935
Start: 3686418
End: 3688850
Strand: Reverse
Name: fct [H]
Synonym: Shal_3021
Alternate gene names: 167624935
Gene position: 3688850-3686418 (Counterclockwise)
Preceding gene: 167624936
Following gene: 167624933
Centisome position: 70.57
GC content: 45.25
Gene sequence:
>2433_bases ATGAGACATTTCCGTTATTCGGTGTTAGCAATTGCTTGTGCATCGACATTTTTAGCAACCAATGTTTACGCTGAGCAAAC AGATGAATCGCTCGATAATGTTGAGCGTATTACTGTCTATGGGCGTCAAAATCAGGTTGTCATGAATTCAGGTTTAGCGA CCAAGTCCGATATGTCGCTGATGGAGACACCTGCAGCGGTAGTTATTGTCGATCAAGAATTGATTCAGGCTCAGGCTTTG ACCAATCTACAAGATTTAGTGCGTAACATCAGTGGTGTGACTCAAGCGGGTAATAACTATGGTATAGGTGATAACTTGGT TATTCGCGGGCTTGGGGCGAACTACACCTACGATGGTATGTATGGTGGAGCTGGGCTTGGCAACACTTTTAACCCTACGC GCTCGCTAACTAATGTCGAATCGGTTGAGGTGCTAAAAGGTCCGGCGACAGGCCTTTACGGTATGGGCAGCGCAGGGGGC GTGATTAACTTAATAGAGAAGAAGCCGCAATTCGAATCAAAGCATGTATTTACCGCTGAAGTCGGCCAATGGAATACTCA TTCTTTAGAAGTCGATAGCACTGCGGCGATAACTGATGATTTAGCCTACCGCGTCGTCGCTAAAACGGCTCGTAGCGATG GCTACCGGGAGATCGGTACCGATCGTGATGAAATATACACTTCGCTTAAGTATGTGCTAGATGATAGCCAAGATCTGATG TTGTCGGCGAGCTATATAAGAGACGCGATTGCAGTAGACTCAATTGGTCATCCTATTCGCATTTTTAACTCAGCCTCAGT TGGCGGTAAAACCGCTGGTGAAGTGACTTGGGAGGATTTAATTAATGATCCAAACAACGCTGGAATTCAGCTAACAGAGG CCCAGCGTAAACAGTTAGCAGACTCGTTAGCCTCAAATGATGGTTTAACTCCCTACGCATTTGGCAATGCAGGCATTATT TCACCAATGGCCAAGGATAATGAGGGCGAAGAGCTGCGTTTTAAGCTGACCCATAATATCTACTTCACTGATAACCTATT TTTGAATCAACAATTGCAGTATCGCGATTACACCTCAGGCTTTGCCCGCCAAACCGGTGCTTACAACTATGTGTATTGGG ACCGCAGAGGTGCGATTAATGCCGACCCACGAGCCCCACTGGTAGAAGATGGAGTGCTTTATCCCTTTGCGGCGCGCCGC CAAGAGTATCGTAAAGTTGATGCCGATGAATCATCTTGGCAGTATTTTGCCGATCTTCGTTATGACTTCCAAATAGGTGA TATTGATAATGAATTGTTGATTAATGCCAATTTTGAGGATAGAAACATTGCGTTCAAGCAATACTCAATTTATGACGCTG ATAAAGTTATCAAGAATAAAGCGGGTGAGGTGATCTACCAAGGCCGTCTGCCGTACATTTATGATATCCGTAATCCTAAT TGGGCTGAAGGTAGCTTCGAAGATCATGATCCGCTACTAACCAGCAACTACGACAAGAAAGTCAGTGCTTGGGGCGTGGG TGTGCAGCATGTGGGCTATTTAGGTTATGGCTTTACTTCTCGCATTGGCGTAGCGTTTAATCAAATAAAACAAGCCTATG AGCACTTAGGTGTCGACTCTAGATACAGTGCAAGCCGCGCGCAGCCAACACCAGAAGCCGATACTACAGACGATGGCATG ACCTATAATTTGGGTTTGACTTACATGCCAACCGACGATTTGTCGTTTTTTGTTAACCACTCGAAAGGGCGCACGGCCTA TAGCATTCTTGGCAGCATTGCCGGAAACGATACTGATAGAGATGACAGCGAATCGGTCAGTGATGACTTAGGGATGCGCT TTAAAGCCTTTGACGATCAAATGTTGACTTCAATTGTGTTTTTTAAGAGTTCACGTACTAATTTGCAATACAGTAATGTG GATTATGAAGAAGGCGTGTCTGGGCCGAGCGTACCTAAGTATTTCTACAATGGCAGCGAAGAAACCACCGGTGTTGAACT GGATATGAATGCTCACCTTAATGAGCAGTGGATGGTTAACGTTAATGCGGTTTATCAAGATGCCCGCGACAAGAAAGATC CTAACCGCTCTAGCTATGATACCCGCCAAAAAGGCGTACCTTATGTCTCGGCAAGTGCTTGGGTAACCTATGGGGCTGAT TGGTTCTCACTTGCGAGTCCAATTAACATCAGTCTTGGCGGTAAGTATGTTGATGACAGAAGTACCAATTCAACCTCATT TGGTATTCCTGACGGCTATGTATCAAGTTATACCGTGCTGGATAGCGCCATTAGTTATGATGTTGACAACTGGAAGCTGC AGCTAAATGTGAACAACTTATTTAATGAAGAGTATTACAGTAAAGCTATGTTCCTAGGCGGTATGCCGGGCGAAGAGCGC AATGCCAAGCTGACTCTGAGCTATCGTTTATAG
Upstream 100 bases:
>100_bases CACAAGCAAGCATCTAATTGTATCGGTGCTGAAACAAGTATTGAAAAGATAATAAGAATCGTTATCATCTCGCCGCATAA TATTAAAGTGGGGTTATTTG
Downstream 100 bases:
>100_bases ATCCAGAACCAGACTCAGCGTGATTTTAACCCAATAAAAAATGCAGCCTAGGCTGCATTTTTTATTGGGTTATATCATCA AGCTACGCATTAGAACTGAT
Product: TonB-dependent receptor plug
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 810; Mature: 810
Protein sequence:
>810_residues MRHFRYSVLAIACASTFLATNVYAEQTDESLDNVERITVYGRQNQVVMNSGLATKSDMSLMETPAAVVIVDQELIQAQAL TNLQDLVRNISGVTQAGNNYGIGDNLVIRGLGANYTYDGMYGGAGLGNTFNPTRSLTNVESVEVLKGPATGLYGMGSAGG VINLIEKKPQFESKHVFTAEVGQWNTHSLEVDSTAAITDDLAYRVVAKTARSDGYREIGTDRDEIYTSLKYVLDDSQDLM LSASYIRDAIAVDSIGHPIRIFNSASVGGKTAGEVTWEDLINDPNNAGIQLTEAQRKQLADSLASNDGLTPYAFGNAGII SPMAKDNEGEELRFKLTHNIYFTDNLFLNQQLQYRDYTSGFARQTGAYNYVYWDRRGAINADPRAPLVEDGVLYPFAARR QEYRKVDADESSWQYFADLRYDFQIGDIDNELLINANFEDRNIAFKQYSIYDADKVIKNKAGEVIYQGRLPYIYDIRNPN WAEGSFEDHDPLLTSNYDKKVSAWGVGVQHVGYLGYGFTSRIGVAFNQIKQAYEHLGVDSRYSASRAQPTPEADTTDDGM TYNLGLTYMPTDDLSFFVNHSKGRTAYSILGSIAGNDTDRDDSESVSDDLGMRFKAFDDQMLTSIVFFKSSRTNLQYSNV DYEEGVSGPSVPKYFYNGSEETTGVELDMNAHLNEQWMVNVNAVYQDARDKKDPNRSSYDTRQKGVPYVSASAWVTYGAD WFSLASPINISLGGKYVDDRSTNSTSFGIPDGYVSSYTVLDSAISYDVDNWKLQLNVNNLFNEEYYSKAMFLGGMPGEER NAKLTLSYRL
Sequences:
>Translated_810_residues MRHFRYSVLAIACASTFLATNVYAEQTDESLDNVERITVYGRQNQVVMNSGLATKSDMSLMETPAAVVIVDQELIQAQAL TNLQDLVRNISGVTQAGNNYGIGDNLVIRGLGANYTYDGMYGGAGLGNTFNPTRSLTNVESVEVLKGPATGLYGMGSAGG VINLIEKKPQFESKHVFTAEVGQWNTHSLEVDSTAAITDDLAYRVVAKTARSDGYREIGTDRDEIYTSLKYVLDDSQDLM LSASYIRDAIAVDSIGHPIRIFNSASVGGKTAGEVTWEDLINDPNNAGIQLTEAQRKQLADSLASNDGLTPYAFGNAGII SPMAKDNEGEELRFKLTHNIYFTDNLFLNQQLQYRDYTSGFARQTGAYNYVYWDRRGAINADPRAPLVEDGVLYPFAARR QEYRKVDADESSWQYFADLRYDFQIGDIDNELLINANFEDRNIAFKQYSIYDADKVIKNKAGEVIYQGRLPYIYDIRNPN WAEGSFEDHDPLLTSNYDKKVSAWGVGVQHVGYLGYGFTSRIGVAFNQIKQAYEHLGVDSRYSASRAQPTPEADTTDDGM TYNLGLTYMPTDDLSFFVNHSKGRTAYSILGSIAGNDTDRDDSESVSDDLGMRFKAFDDQMLTSIVFFKSSRTNLQYSNV DYEEGVSGPSVPKYFYNGSEETTGVELDMNAHLNEQWMVNVNAVYQDARDKKDPNRSSYDTRQKGVPYVSASAWVTYGAD WFSLASPINISLGGKYVDDRSTNSTSFGIPDGYVSSYTVLDSAISYDVDNWKLQLNVNNLFNEEYYSKAMFLGGMPGEER NAKLTLSYRL >Mature_810_residues MRHFRYSVLAIACASTFLATNVYAEQTDESLDNVERITVYGRQNQVVMNSGLATKSDMSLMETPAAVVIVDQELIQAQAL TNLQDLVRNISGVTQAGNNYGIGDNLVIRGLGANYTYDGMYGGAGLGNTFNPTRSLTNVESVEVLKGPATGLYGMGSAGG VINLIEKKPQFESKHVFTAEVGQWNTHSLEVDSTAAITDDLAYRVVAKTARSDGYREIGTDRDEIYTSLKYVLDDSQDLM LSASYIRDAIAVDSIGHPIRIFNSASVGGKTAGEVTWEDLINDPNNAGIQLTEAQRKQLADSLASNDGLTPYAFGNAGII SPMAKDNEGEELRFKLTHNIYFTDNLFLNQQLQYRDYTSGFARQTGAYNYVYWDRRGAINADPRAPLVEDGVLYPFAARR QEYRKVDADESSWQYFADLRYDFQIGDIDNELLINANFEDRNIAFKQYSIYDADKVIKNKAGEVIYQGRLPYIYDIRNPN WAEGSFEDHDPLLTSNYDKKVSAWGVGVQHVGYLGYGFTSRIGVAFNQIKQAYEHLGVDSRYSASRAQPTPEADTTDDGM TYNLGLTYMPTDDLSFFVNHSKGRTAYSILGSIAGNDTDRDDSESVSDDLGMRFKAFDDQMLTSIVFFKSSRTNLQYSNV DYEEGVSGPSVPKYFYNGSEETTGVELDMNAHLNEQWMVNVNAVYQDARDKKDPNRSSYDTRQKGVPYVSASAWVTYGAD WFSLASPINISLGGKYVDDRSTNSTSFGIPDGYVSSYTVLDSAISYDVDNWKLQLNVNNLFNEEYYSKAMFLGGMPGEER NAKLTLSYRL
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 90180; Mature: 90180
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRHFRYSVLAIACASTFLATNVYAEQTDESLDNVERITVYGRQNQVVMNSGLATKSDMSL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCCCCHH METPAAVVIVDQELIQAQALTNLQDLVRNISGVTQAGNNYGIGDNLVIRGLGANYTYDGM HHCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEECCC YGGAGLGNTFNPTRSLTNVESVEVLKGPATGLYGMGSAGGVINLIEKKPQFESKHVFTAE CCCCCCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEE VGQWNTHSLEVDSTAAITDDLAYRVVAKTARSDGYREIGTDRDEIYTSLKYVLDDSQDLM CCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCHHHE LSASYIRDAIAVDSIGHPIRIFNSASVGGKTAGEVTWEDLINDPNNAGIQLTEAQRKQLA EEHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEHHHHHCCCCCCCEEEEHHHHHHHH DSLASNDGLTPYAFGNAGIISPMAKDNEGEELRFKLTHNIYFTDNLFLNQQLQYRDYTSG HHHHCCCCCCEEECCCCCEECCCCCCCCCCEEEEEEEEEEEEECCEEECCEECCCHHHHH FARQTGAYNYVYWDRRGAINADPRAPLVEDGVLYPFAARRQEYRKVDADESSWQYFADLR HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCEEEEEEE YDFQIGDIDNELLINANFEDRNIAFKQYSIYDADKVIKNKAGEVIYQGRLPYIYDIRNPN EEEEECCCCCEEEEECCCCCCCEEEEEEEECCHHHHHHCCCCCEEEECCCCEEEECCCCC WAEGSFEDHDPLLTSNYDKKVSAWGVGVQHVGYLGYGFTSRIGVAFNQIKQAYEHLGVDS CCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHEEECCCHHHHHHHHHHHHHHHHHHCCCCC RYSASRAQPTPEADTTDDGMTYNLGLTYMPTDDLSFFVNHSKGRTAYSILGSIAGNDTDR CCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHCCCCCCC DDSESVSDDLGMRFKAFDDQMLTSIVFFKSSRTNLQYSNVDYEEGVSGPSVPKYFYNGSE CCCHHHHHHHCCEEEHHHHHHHHHHHEEECCCCCEEECCCCHHHCCCCCCCCHHEECCCC ETTGVELDMNAHLNEQWMVNVNAVYQDARDKKDPNRSSYDTRQKGVPYVSASAWVTYGAD CCCCEEEEECCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCHHHCCCCEEECCCEEEECCH WFSLASPINISLGGKYVDDRSTNSTSFGIPDGYVSSYTVLDSAISYDVDNWKLQLNVNNL HHHHCCCEEEEECCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEHHHH FNEEYYSKAMFLGGMPGEERNAKLTLSYRL HCHHHHHHHHEECCCCCCCCCCEEEEEEEC >Mature Secondary Structure MRHFRYSVLAIACASTFLATNVYAEQTDESLDNVERITVYGRQNQVVMNSGLATKSDMSL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCCCCHH METPAAVVIVDQELIQAQALTNLQDLVRNISGVTQAGNNYGIGDNLVIRGLGANYTYDGM HHCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEECCC YGGAGLGNTFNPTRSLTNVESVEVLKGPATGLYGMGSAGGVINLIEKKPQFESKHVFTAE CCCCCCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEE VGQWNTHSLEVDSTAAITDDLAYRVVAKTARSDGYREIGTDRDEIYTSLKYVLDDSQDLM CCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCHHHE LSASYIRDAIAVDSIGHPIRIFNSASVGGKTAGEVTWEDLINDPNNAGIQLTEAQRKQLA EEHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEHHHHHCCCCCCCEEEEHHHHHHHH DSLASNDGLTPYAFGNAGIISPMAKDNEGEELRFKLTHNIYFTDNLFLNQQLQYRDYTSG HHHHCCCCCCEEECCCCCEECCCCCCCCCCEEEEEEEEEEEEECCEEECCEECCCHHHHH FARQTGAYNYVYWDRRGAINADPRAPLVEDGVLYPFAARRQEYRKVDADESSWQYFADLR HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCEEEEEEE YDFQIGDIDNELLINANFEDRNIAFKQYSIYDADKVIKNKAGEVIYQGRLPYIYDIRNPN EEEEECCCCCEEEEECCCCCCCEEEEEEEECCHHHHHHCCCCCEEEECCCCEEEECCCCC WAEGSFEDHDPLLTSNYDKKVSAWGVGVQHVGYLGYGFTSRIGVAFNQIKQAYEHLGVDS CCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHEEECCCHHHHHHHHHHHHHHHHHHCCCCC RYSASRAQPTPEADTTDDGMTYNLGLTYMPTDDLSFFVNHSKGRTAYSILGSIAGNDTDR CCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHCCCCCCC DDSESVSDDLGMRFKAFDDQMLTSIVFFKSSRTNLQYSNVDYEEGVSGPSVPKYFYNGSE CCCHHHHHHHCCEEEHHHHHHHHHHHEEECCCCCEEECCCCHHHCCCCCCCCHHEECCCC ETTGVELDMNAHLNEQWMVNVNAVYQDARDKKDPNRSSYDTRQKGVPYVSASAWVTYGAD CCCCEEEEECCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCHHHCCCCEEECCCEEEECCH WFSLASPINISLGGKYVDDRSTNSTSFGIPDGYVSSYTVLDSAISYDVDNWKLQLNVNNL HHHHCCCEEEEECCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEHHHH FNEEYYSKAMFLGGMPGEERNAKLTLSYRL HCHHHHHHHHEECCCCCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]