| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624909
Identifier: 167624909
GI number: 167624909
Start: 3639003
End: 3639395
Strand: Reverse
Name: 167624909
Synonym: Shal_2995
Alternate gene names: NA
Gene position: 3639395-3639003 (Counterclockwise)
Preceding gene: 167624912
Following gene: 167624907
Centisome position: 69.63
GC content: 42.24
Gene sequence:
>393_bases ATGTTAATACAGGAAGTTAAAGTGAAAACAAAATTATTAGGTTTAGCGTTTTTTGGGATTGCAAGCTTAGGGCTAACGGG CTGTGTGGTCAATCTCGGTGATGGCGAATCGGATTGGGATAGTAATGGGTCATGGGAAAAAGTTCAGGATAAAAACCGCG ATAACTTATCAAAAATCTCCTTGGGTATGTCTAAGGACCAAGTCGTAACCCTAATGGGGACAGCCGATTTTAATGAGGCC TATATCCAACAAGATAAAGACGTTTATGTTCTTTTTTATCGCACACAACGGACCCACAGCGACGGTAAAACCACCAAAGA TGAATGTACTCCAGTAGTGATCAGTAATAACGCGGTCGTTGGTTGGGGGGAGGTGGCTTACAGTAAGATCTAA
Upstream 100 bases:
>100_bases TCGCAGCATAATACCCAAGGTCTTCTTTAAAATAAACACATGTAAAAACAGTAGCTTGGTGCTTGGCATGTTAATTGCTT TTTAAATAAAACTAAAAACA
Downstream 100 bases:
>100_bases CCTTAAAACCAAAACTAAGCCTAAGGCTTTCTCAACAGGGTGTCCAGATGGTCGATAACTTCAGACCACTGGGCATCTTG ATTAAAAGACTCCACTAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 130; Mature: 130
Protein sequence:
>130_residues MLIQEVKVKTKLLGLAFFGIASLGLTGCVVNLGDGESDWDSNGSWEKVQDKNRDNLSKISLGMSKDQVVTLMGTADFNEA YIQQDKDVYVLFYRTQRTHSDGKTTKDECTPVVISNNAVVGWGEVAYSKI
Sequences:
>Translated_130_residues MLIQEVKVKTKLLGLAFFGIASLGLTGCVVNLGDGESDWDSNGSWEKVQDKNRDNLSKISLGMSKDQVVTLMGTADFNEA YIQQDKDVYVLFYRTQRTHSDGKTTKDECTPVVISNNAVVGWGEVAYSKI >Mature_130_residues MLIQEVKVKTKLLGLAFFGIASLGLTGCVVNLGDGESDWDSNGSWEKVQDKNRDNLSKISLGMSKDQVVTLMGTADFNEA YIQQDKDVYVLFYRTQRTHSDGKTTKDECTPVVISNNAVVGWGEVAYSKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14342; Mature: 14342
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIQEVKVKTKLLGLAFFGIASLGLTGCVVNLGDGESDWDSNGSWEKVQDKNRDNLSKIS CCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHCCCCCCCCCEEE LGMSKDQVVTLMGTADFNEAYIQQDKDVYVLFYRTQRTHSDGKTTKDECTPVVISNNAVV CCCCCCEEEEEEECCCCCHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEECCEEE GWGEVAYSKI ECCHHEEECC >Mature Secondary Structure MLIQEVKVKTKLLGLAFFGIASLGLTGCVVNLGDGESDWDSNGSWEKVQDKNRDNLSKIS CCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHCCCCCCCCCEEE LGMSKDQVVTLMGTADFNEAYIQQDKDVYVLFYRTQRTHSDGKTTKDECTPVVISNNAVV CCCCCCEEEEEEECCCCCHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEECCEEE GWGEVAYSKI ECCHHEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA