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The map label for this gene is skp [H]

Identifier: 167624886

GI number: 167624886

Start: 3615228

End: 3615734

Strand: Reverse

Name: skp [H]

Synonym: Shal_2972

Alternate gene names: 167624886

Gene position: 3615734-3615228 (Counterclockwise)

Preceding gene: 167624887

Following gene: 167624885

Centisome position: 69.18

GC content: 43.79

Gene sequence:

>507_bases
TTGAATAAGATGTTGAATCGCGCAATGATGGTTTTGGTTCTTTTAGGCGCACCGCTAGCGGCGCATGCAGAAAAGATCGC
AGTAGTTGATATGCAAGCAGTTTTTGAGCAGTTGCCACAGCGCGAGCAAGTGAACGAAACATTAAAAGCTGAGTTTGGTG
ATCGTGTTGCTGCCGTGCAGAAGATGCAAGAAGAGCTTCGTGGTTTGCTAGAAAAGCAACAGCGTGATGCTGCGCTAATG
AGCGAGTCTCAGAAAACCGATATGATGCGCAAGATGGAGTCTATGAAAGCTGAGCTTCAATTGAAGGGCAAAGCATTAGA
TGAAGATATGCGTCGTCGTAACGGTGAAGAGCAGAATAAACTACTACTTGAAGTTCAAAAGACAATTAACTCTATTGCTG
AAAAAGAGCAATATGACATGGTGCTTCAACGTGGCGCCGTTATCTATGTTAAGCCAAGCGCTGACATTAGTAACAAAGTG
GTTGAAGCTTTAGGTAAAGGCAAGTAA

Upstream 100 bases:

>100_bases
AGGATGATGAAACTGAAATCTTCTCGTTTAATATTGGTAAAACTTTCTAAAATCAATTTGAAAAAAATCGGCAAGTTCTG
CTGAGATAAAGGAGTTCGTT

Downstream 100 bases:

>100_bases
ATAGATGAAAAGCTATACTTTAAGAGTATTGGCTGACCATTTAAATGCAGACGTTCAAGGTGATGACTCAGTCGAAATTT
CGACTGTAGGCACCTTGGAC

Product: outer membrane chaperone Skp

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MNKMLNRAMMVLVLLGAPLAAHAEKIAVVDMQAVFEQLPQREQVNETLKAEFGDRVAAVQKMQEELRGLLEKQQRDAALM
SESQKTDMMRKMESMKAELQLKGKALDEDMRRRNGEEQNKLLLEVQKTINSIAEKEQYDMVLQRGAVIYVKPSADISNKV
VEALGKGK

Sequences:

>Translated_168_residues
MNKMLNRAMMVLVLLGAPLAAHAEKIAVVDMQAVFEQLPQREQVNETLKAEFGDRVAAVQKMQEELRGLLEKQQRDAALM
SESQKTDMMRKMESMKAELQLKGKALDEDMRRRNGEEQNKLLLEVQKTINSIAEKEQYDMVLQRGAVIYVKPSADISNKV
VEALGKGK
>Mature_168_residues
MNKMLNRAMMVLVLLGAPLAAHAEKIAVVDMQAVFEQLPQREQVNETLKAEFGDRVAAVQKMQEELRGLLEKQQRDAALM
SESQKTDMMRKMESMKAELQLKGKALDEDMRRRNGEEQNKLLLEVQKTINSIAEKEQYDMVLQRGAVIYVKPSADISNKV
VEALGKGK

Specific function: Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm [H]

COG id: COG2825

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the skp family [H]

Homologues:

Organism=Escherichia coli, GI1786375, Length=145, Percent_Identity=29.6551724137931, Blast_Score=74, Evalue=7e-15,

Paralogues:

None

Copy number: 580 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005632 [H]

Pfam domain/function: PF03938 OmpH [H]

EC number: NA

Molecular weight: Translated: 19017; Mature: 19017

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.7 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
7.7 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKMLNRAMMVLVLLGAPLAAHAEKIAVVDMQAVFEQLPQREQVNETLKAEFGDRVAAVQ
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
KMQEELRGLLEKQQRDAALMSESQKTDMMRKMESMKAELQLKGKALDEDMRRRNGEEQNK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHH
LLLEVQKTINSIAEKEQYDMVLQRGAVIYVKPSADISNKVVEALGKGK
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MNKMLNRAMMVLVLLGAPLAAHAEKIAVVDMQAVFEQLPQREQVNETLKAEFGDRVAAVQ
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
KMQEELRGLLEKQQRDAALMSESQKTDMMRKMESMKAELQLKGKALDEDMRRRNGEEQNK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHH
LLLEVQKTINSIAEKEQYDMVLQRGAVIYVKPSADISNKVVEALGKGK
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA