| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624808
Identifier: 167624808
GI number: 167624808
Start: 3518576
End: 3519169
Strand: Reverse
Name: 167624808
Synonym: Shal_2894
Alternate gene names: NA
Gene position: 3519169-3518576 (Counterclockwise)
Preceding gene: 167624809
Following gene: 167624807
Centisome position: 67.33
GC content: 43.43
Gene sequence:
>594_bases TTGACCATTAAAATAGACTTTGAACAACAAATAAAGCACTGGCTACTCGAAGATGAGTACCGGTTTAATGCTTTGCGCAT TGTCGAGCAGCTAAAGTTAAACGATTGGATGTTAGCGGCAGGTTTTGTCCGCAATTTAGTTTGGGATAAGTTACATGGCC TGCAAACAGCGCTCAATGATATCGACCTTATCTATTTTGACTCGAGTGACCTATCCGCCGAGAGGGATACTGCAATCGAA GCCGAGCTAAATCGAATAGCCCCTATCTACCCATGGTCGGTTAAGAATCAAGCGAGAATGCATCTGCGCAACCAGCATCA AGCATATACATCAAGTCTTGATGCCATGAGTTATTGGCCTGAAAAGCAGACTGCAGTGGCGGTGAGTAGTCGTTTGCTAA CATTTAAATCTTTGGCAGCATCAACTGCAATAATAGAACCTGCATCATTGATTTTACATAGTCCGTTTGATCTAGCTTGT CTGTTTGATCTGTCGCTACAACACAATCCTAAAGCAAAGCGTGCGTTGTTTGAGCGGAGAGTGAAGCAAAAGCGATGGTT GCAAAGCTACCCTAAGCTACGAGATAATGGTTAG
Upstream 100 bases:
>100_bases TTTTGTTTATTAAGCCGTTTGAGTTAGGTATTGAGGCGAGTTTTGTATAAGTTAATAACCCTAGCAGTTGAATGTTTAAT GCTTTGAAAGAGAGTGACTA
Downstream 100 bases:
>100_bases TGGTGAACTTATGAGCATACAATATTTATTTTGTTGATTTATTGTCTGACACATTAGGGCATTGTTAGAGGGCTATGATA GCGTTTGCGTGTTAGTCGTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 197; Mature: 196
Protein sequence:
>197_residues MTIKIDFEQQIKHWLLEDEYRFNALRIVEQLKLNDWMLAAGFVRNLVWDKLHGLQTALNDIDLIYFDSSDLSAERDTAIE AELNRIAPIYPWSVKNQARMHLRNQHQAYTSSLDAMSYWPEKQTAVAVSSRLLTFKSLAASTAIIEPASLILHSPFDLAC LFDLSLQHNPKAKRALFERRVKQKRWLQSYPKLRDNG
Sequences:
>Translated_197_residues MTIKIDFEQQIKHWLLEDEYRFNALRIVEQLKLNDWMLAAGFVRNLVWDKLHGLQTALNDIDLIYFDSSDLSAERDTAIE AELNRIAPIYPWSVKNQARMHLRNQHQAYTSSLDAMSYWPEKQTAVAVSSRLLTFKSLAASTAIIEPASLILHSPFDLAC LFDLSLQHNPKAKRALFERRVKQKRWLQSYPKLRDNG >Mature_196_residues TIKIDFEQQIKHWLLEDEYRFNALRIVEQLKLNDWMLAAGFVRNLVWDKLHGLQTALNDIDLIYFDSSDLSAERDTAIEA ELNRIAPIYPWSVKNQARMHLRNQHQAYTSSLDAMSYWPEKQTAVAVSSRLLTFKSLAASTAIIEPASLILHSPFDLACL FDLSLQHNPKAKRALFERRVKQKRWLQSYPKLRDNG
Specific function: Unknown
COG id: COG3575
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22929; Mature: 22797
Theoretical pI: Translated: 8.96; Mature: 8.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIKIDFEQQIKHWLLEDEYRFNALRIVEQLKLNDWMLAAGFVRNLVWDKLHGLQTALND CEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC IDLIYFDSSDLSAERDTAIEAELNRIAPIYPWSVKNQARMHLRNQHQAYTSSLDAMSYWP CEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC EKQTAVAVSSRLLTFKSLAASTAIIEPASLILHSPFDLACLFDLSLQHNPKAKRALFERR CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHH VKQKRWLQSYPKLRDNG HHHHHHHHHCCCCCCCC >Mature Secondary Structure TIKIDFEQQIKHWLLEDEYRFNALRIVEQLKLNDWMLAAGFVRNLVWDKLHGLQTALND EEEECHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC IDLIYFDSSDLSAERDTAIEAELNRIAPIYPWSVKNQARMHLRNQHQAYTSSLDAMSYWP CEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC EKQTAVAVSSRLLTFKSLAASTAIIEPASLILHSPFDLACLFDLSLQHNPKAKRALFERR CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHH VKQKRWLQSYPKLRDNG HHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA