| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is metA [H]
Identifier: 167624798
GI number: 167624798
Start: 3506573
End: 3507511
Strand: Reverse
Name: metA [H]
Synonym: Shal_2884
Alternate gene names: 167624798
Gene position: 3507511-3506573 (Counterclockwise)
Preceding gene: 167624799
Following gene: 167624792
Centisome position: 67.1
GC content: 46.75
Gene sequence:
>939_bases ATGCCGGTTAAAATCCCCGATGATCTGCCCGCTGCAGAGATCCTGGAGTCAGAGAATATCTTTGTCATGTCCGAGACTCG GGCGGCGAATCAAGATATTCGTCCAATGAAGGTATTAATCCTTAATTTAATGCCCAATAAGATTGAGACCGAAACCCAAC TGCTACGCCTCTTAGGTAATACCCCTCTGCAAGTCGATGTGGATCTGCTACGAATTCACGATAAAGCTTCAAAGCATACC TCTATTGATCATATGAACAATTTCTATCGAGATTTTGAGCAGGTACGGCAGAAAAACTATGACGGTTTAATTATTACTGG CGCGCCGCTTGGGCAGATAGAGTTTGAAGAGGTGTTATACTGGGATCATATCCGTGAAATCATCGATTGGTCACAGCAGC ATGTCACCTCGGTGCTCTTCCTATGTTGGGCGGCTCATGCGGCGCTGTATCATCTATTCGGTCTAAACCGATCACTGCTG ACAACTAAGCGCTCAGGGGTGTTTACCCATAAGCGCACCTCTGAGCACTATCCCTTGTTGCGTGGCTTCGATGATGAATT TTTTGCACCGCATTCGCGTTTTGCCGAGATGGATATCGATAAGCTAAAGGCGCACCCAGAGCTTCAGGTGTTGACCGAGT CAGAGACAGCAGGTGCCTATATGGTGCTCTGCAAAAACAATCGTAACCTGTTTGTGATGGGGCATCCCGAGTATCAAAAA TCGACCTTAAAAGATGAGTATTACCGCGATCTTGAGCAAGGTTTAGCGCCTGAAGTGCCGCAAAATTACTTTACCAACAA TGATCCACTGCAAGCGCCCATTGCCCGTTGGCACAGTCATGGCAGTCTACTGGTGAGTAATTGGCTTAACTATTATGTCT ACCAGCTGACGCCATATAATCTCGATGATATGACGGGGATAACCCCTTGGGGAACATAA
Upstream 100 bases:
>100_bases TTAGTACAGAGGGTGGCACGTTAACTAAATTAGCTGTGAGTTAGTCTAGCTGGCGCGTCTCTTTCTGATAGGTTACATAA TTAGAATAAAGAGGCGCGTT
Downstream 100 bases:
>100_bases TAACCAGTGGAGTAAATCGCTGTTAGTTGCATAAAATGCCAGAATACTCTAATGAGTACTGGCATTTTATGTACCTTTAT TTGTAGAGACTCATCGATAG
Product: homoserine O-succinyltransferase
Products: NA
Alternate protein names: Homoserine O-transsuccinylase; HTS [H]
Number of amino acids: Translated: 312; Mature: 311
Protein sequence:
>312_residues MPVKIPDDLPAAEILESENIFVMSETRAANQDIRPMKVLILNLMPNKIETETQLLRLLGNTPLQVDVDLLRIHDKASKHT SIDHMNNFYRDFEQVRQKNYDGLIITGAPLGQIEFEEVLYWDHIREIIDWSQQHVTSVLFLCWAAHAALYHLFGLNRSLL TTKRSGVFTHKRTSEHYPLLRGFDDEFFAPHSRFAEMDIDKLKAHPELQVLTESETAGAYMVLCKNNRNLFVMGHPEYQK STLKDEYYRDLEQGLAPEVPQNYFTNNDPLQAPIARWHSHGSLLVSNWLNYYVYQLTPYNLDDMTGITPWGT
Sequences:
>Translated_312_residues MPVKIPDDLPAAEILESENIFVMSETRAANQDIRPMKVLILNLMPNKIETETQLLRLLGNTPLQVDVDLLRIHDKASKHT SIDHMNNFYRDFEQVRQKNYDGLIITGAPLGQIEFEEVLYWDHIREIIDWSQQHVTSVLFLCWAAHAALYHLFGLNRSLL TTKRSGVFTHKRTSEHYPLLRGFDDEFFAPHSRFAEMDIDKLKAHPELQVLTESETAGAYMVLCKNNRNLFVMGHPEYQK STLKDEYYRDLEQGLAPEVPQNYFTNNDPLQAPIARWHSHGSLLVSNWLNYYVYQLTPYNLDDMTGITPWGT >Mature_311_residues PVKIPDDLPAAEILESENIFVMSETRAANQDIRPMKVLILNLMPNKIETETQLLRLLGNTPLQVDVDLLRIHDKASKHTS IDHMNNFYRDFEQVRQKNYDGLIITGAPLGQIEFEEVLYWDHIREIIDWSQQHVTSVLFLCWAAHAALYHLFGLNRSLLT TKRSGVFTHKRTSEHYPLLRGFDDEFFAPHSRFAEMDIDKLKAHPELQVLTESETAGAYMVLCKNNRNLFVMGHPEYQKS TLKDEYYRDLEQGLAPEVPQNYFTNNDPLQAPIARWHSHGSLLVSNWLNYYVYQLTPYNLDDMTGITPWGT
Specific function: Methionine biosynthesis; HTS variant; first step. [C]
COG id: COG1897
COG function: function code E; Homoserine trans-succinylase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HTS family [H]
Homologues:
Organism=Escherichia coli, GI1790443, Length=304, Percent_Identity=53.9473684210526, Blast_Score=363, Evalue=1e-101,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005697 - ProDom: PD037892 [H]
Pfam domain/function: PF04204 HTS [H]
EC number: =2.3.1.46 [H]
Molecular weight: Translated: 36220; Mature: 36088
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVKIPDDLPAAEILESENIFVMSETRAANQDIRPMKVLILNLMPNKIETETQLLRLLGN CCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCC TPLQVDVDLLRIHDKASKHTSIDHMNNFYRDFEQVRQKNYDGLIITGAPLGQIEFEEVLY CCCEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH WDHIREIIDWSQQHVTSVLFLCWAAHAALYHLFGLNRSLLTTKRSGVFTHKRTSEHYPLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEECCCCCCCCHH RGFDDEFFAPHSRFAEMDIDKLKAHPELQVLTESETAGAYMVLCKNNRNLFVMGHPEYQK CCCCHHHCCCCHHHHHCCHHHHCCCCCEEEEECCCCCCEEEEEEECCCEEEEEECCHHHH STLKDEYYRDLEQGLAPEVPQNYFTNNDPLQAPIARWHSHGSLLVSNWLNYYVYQLTPYN HHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHCCCCHHHHHHHCEEEEEECCCC LDDMTGITPWGT CCCCCCCCCCCC >Mature Secondary Structure PVKIPDDLPAAEILESENIFVMSETRAANQDIRPMKVLILNLMPNKIETETQLLRLLGN CCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCC TPLQVDVDLLRIHDKASKHTSIDHMNNFYRDFEQVRQKNYDGLIITGAPLGQIEFEEVLY CCCEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH WDHIREIIDWSQQHVTSVLFLCWAAHAALYHLFGLNRSLLTTKRSGVFTHKRTSEHYPLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEECCCCCCCCHH RGFDDEFFAPHSRFAEMDIDKLKAHPELQVLTESETAGAYMVLCKNNRNLFVMGHPEYQK CCCCHHHCCCCHHHHHCCHHHHCCCCCEEEEECCCCCCEEEEEEECCCEEEEEECCHHHH STLKDEYYRDLEQGLAPEVPQNYFTNNDPLQAPIARWHSHGSLLVSNWLNYYVYQLTPYN HHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHCCCCHHHHHHHCEEEEEECCCC LDDMTGITPWGT CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA