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The map label for this gene is ifcA [H]

Identifier: 167624763

GI number: 167624763

Start: 3462350

End: 3464104

Strand: Reverse

Name: ifcA [H]

Synonym: Shal_2847

Alternate gene names: 167624763

Gene position: 3464104-3462350 (Counterclockwise)

Preceding gene: 167624764

Following gene: 167624762

Centisome position: 66.27

GC content: 42.62

Gene sequence:

>1755_bases
GTGATTAAGAAAACAATAATTGCAAGTGCTATCTTGGCACTAACCGTGGGATGTTCTGTACAAGACTCAGGCAAAGTTGT
AACCAGTGAAGGTACGGCTTTTGGAAAACATGGCGAAATTAAGGTTCAAACTGCCACTAAAGGTGGGCAGTTGGTTAGTA
TTAATGTGCTTGAACAAAAAGAAAATAAGGTATTAGCAGCGTCAGTTTATACTGAAATGAAAGATGCTATGATCAATCAA
AATACCACCGAAGTTGACGGTATTAGTGGTGCTACAGTCACAAGTAATGCATTTAAAGAAGCGGTTGAAAGCTCACTTGC
AGCAGCTGGGGTGAGTTTGGTCGCGGGCTTAGCTAAGGCAAATGACACTAGCAAAGCGATTATAGAGACTGAGCAGAATT
TTGATGTTGTGGTTATTGGTTCAGGCGGCGCAGGACTCAGTGCAGCGATTACTGCAAAAAATGCAGGTGCGGATGTTGTT
ATTATTGAGAAAATGCCAACTGTGGGCGGTAACAGTTTAATTACTGGTGGGCAAATGAACGTTCCTGGTAACTGGGTTCA
AAAGTCTATGGGTATTGAAGATAGCATTGATGTTTTTGTTCAAGATACCCTAAAGGGCGGTGATTATCTTGGCGACCCAG
AAATGGTTCGACTAATGGCCGAAGAAGCGCTACCTGCTGCTGAGTGGTTACGCGATTATATTAAAGTTGATTTTTATCCG
GACCAATTATTCCAATTTGGTGGGCATAGTGTGAAGCGTGCTTTGATCCCAAGAAATCACACGGGAGCAGAGTGGATCAG
TAAGTTTATGGCAAAAACTGATGAGCTTGAGATCCCAATTCATACTCGTACAACTGCTACTGCTTTGATTCAGGATCAGA
ACGGTCGTGTGATTGGTGTTGAAGCCGAGAAAAATGGTCAGAAAATTACTTATATGGCAGATCGTGGCGTGATTATGGCA
ACCGGTGGTTTCGGTGCTAACGTGGCAATGCGTACTAAGTATGTACCAGAGCTAGATAATCGTTACGGCACAACTAACGC
TCGAGGAATTATGGGTGACGGTATTGTGATGGCTCAAAAACTGAATGCCAAGACTCACAATATGGAATCAATCCAAACTT
ATCCTATTTGTCATACCGACACGGGGGTGATCTCTTTAATCGCTGACTCTCGCTTCTTTGGCGCTATCGTTGTTAATAAA
GAAGGTCACCGTTTCGTTGAAGAGCTAGAGCGACGCGATGTAATTAGTCGTGCAATTTTGGCTCAAACTAATCAACAAGC
TTACGTGTTATGGGGAAGTGAAATCGAGCAGATTGCTGAAACAGCTAAAGTTCATAAAGATGAATTCAATGAACTAAACC
GTAAAGGCATGATGTACAAAGCGGACTCAATTGAAGAGTTGGCCAGCAAGTTTGGCGTTGATAAAAAAGCACTGATGAAG
CAAGTTGAGCGCGTTAATCAATTTGCTAAAAATGGTAAGGATAGCGAATTCAATCATCGTGGTGGTTTGAAGCCAATAAT
GAAAGCACCTTTCTATATGCTAGTTGCTAAGCCATCTGTTCACCACACTATGGGGGGATTGATGACAGATACTAAAACTC
GTGTACTTGATAGCAAAGGTAAAGTTATCGATGGTTTATATGCGGCAGGTGAGGTCACTGGTATGACGCATGGATCTAAT
CGTCTAGGTGGTAACGCGATTACCGATATTACCGTTTTCGGCCGTATTGCAGGTAAAGAAGCTGCAGCGCACTAA

Upstream 100 bases:

>100_bases
CATTTCGATAGCTGGGGCGCAGCCCCGAATGACGGCATTGAATATGGCGTTGCTGTTGGTTTTAGCTTTTAGTATTTGAT
TGATATAATAGGAATAAATC

Downstream 100 bases:

>100_bases
TTTGTGATAGCGCTTAACGTAAATGCCGCTCACGACAGTGAGCGGCATTTTTTTGCTTATTAAATAGATGATAGCTGTTG
GATTTTCCTCTAGGTGCTGT

Product: flavocytochrome c

Products: NA

Alternate protein names: Fe(3+)-induced flavocytochrome C3; Ifc3; Iron(III)-induced flavocytochrome C3 [H]

Number of amino acids: Translated: 584; Mature: 584

Protein sequence:

>584_residues
MIKKTIIASAILALTVGCSVQDSGKVVTSEGTAFGKHGEIKVQTATKGGQLVSINVLEQKENKVLAASVYTEMKDAMINQ
NTTEVDGISGATVTSNAFKEAVESSLAAAGVSLVAGLAKANDTSKAIIETEQNFDVVVIGSGGAGLSAAITAKNAGADVV
IIEKMPTVGGNSLITGGQMNVPGNWVQKSMGIEDSIDVFVQDTLKGGDYLGDPEMVRLMAEEALPAAEWLRDYIKVDFYP
DQLFQFGGHSVKRALIPRNHTGAEWISKFMAKTDELEIPIHTRTTATALIQDQNGRVIGVEAEKNGQKITYMADRGVIMA
TGGFGANVAMRTKYVPELDNRYGTTNARGIMGDGIVMAQKLNAKTHNMESIQTYPICHTDTGVISLIADSRFFGAIVVNK
EGHRFVEELERRDVISRAILAQTNQQAYVLWGSEIEQIAETAKVHKDEFNELNRKGMMYKADSIEELASKFGVDKKALMK
QVERVNQFAKNGKDSEFNHRGGLKPIMKAPFYMLVAKPSVHHTMGGLMTDTKTRVLDSKGKVIDGLYAAGEVTGMTHGSN
RLGGNAITDITVFGRIAGKEAAAH

Sequences:

>Translated_584_residues
MIKKTIIASAILALTVGCSVQDSGKVVTSEGTAFGKHGEIKVQTATKGGQLVSINVLEQKENKVLAASVYTEMKDAMINQ
NTTEVDGISGATVTSNAFKEAVESSLAAAGVSLVAGLAKANDTSKAIIETEQNFDVVVIGSGGAGLSAAITAKNAGADVV
IIEKMPTVGGNSLITGGQMNVPGNWVQKSMGIEDSIDVFVQDTLKGGDYLGDPEMVRLMAEEALPAAEWLRDYIKVDFYP
DQLFQFGGHSVKRALIPRNHTGAEWISKFMAKTDELEIPIHTRTTATALIQDQNGRVIGVEAEKNGQKITYMADRGVIMA
TGGFGANVAMRTKYVPELDNRYGTTNARGIMGDGIVMAQKLNAKTHNMESIQTYPICHTDTGVISLIADSRFFGAIVVNK
EGHRFVEELERRDVISRAILAQTNQQAYVLWGSEIEQIAETAKVHKDEFNELNRKGMMYKADSIEELASKFGVDKKALMK
QVERVNQFAKNGKDSEFNHRGGLKPIMKAPFYMLVAKPSVHHTMGGLMTDTKTRVLDSKGKVIDGLYAAGEVTGMTHGSN
RLGGNAITDITVFGRIAGKEAAAH
>Mature_584_residues
MIKKTIIASAILALTVGCSVQDSGKVVTSEGTAFGKHGEIKVQTATKGGQLVSINVLEQKENKVLAASVYTEMKDAMINQ
NTTEVDGISGATVTSNAFKEAVESSLAAAGVSLVAGLAKANDTSKAIIETEQNFDVVVIGSGGAGLSAAITAKNAGADVV
IIEKMPTVGGNSLITGGQMNVPGNWVQKSMGIEDSIDVFVQDTLKGGDYLGDPEMVRLMAEEALPAAEWLRDYIKVDFYP
DQLFQFGGHSVKRALIPRNHTGAEWISKFMAKTDELEIPIHTRTTATALIQDQNGRVIGVEAEKNGQKITYMADRGVIMA
TGGFGANVAMRTKYVPELDNRYGTTNARGIMGDGIVMAQKLNAKTHNMESIQTYPICHTDTGVISLIADSRFFGAIVVNK
EGHRFVEELERRDVISRAILAQTNQQAYVLWGSEIEQIAETAKVHKDEFNELNRKGMMYKADSIEELASKFGVDKKALMK
QVERVNQFAKNGKDSEFNHRGGLKPIMKAPFYMLVAKPSVHHTMGGLMTDTKTRVLDSKGKVIDGLYAAGEVTGMTHGSN
RLGGNAITDITVFGRIAGKEAAAH

Specific function: Catalyzes unidirectional fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown [H]

COG id: COG1053

COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

Organism=Homo sapiens, GI156416003, Length=486, Percent_Identity=27.1604938271605, Blast_Score=100, Evalue=6e-21,
Organism=Escherichia coli, GI1786942, Length=475, Percent_Identity=26.9473684210526, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1790597, Length=425, Percent_Identity=25.6470588235294, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1788928, Length=313, Percent_Identity=28.7539936102236, Blast_Score=84, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI71986328, Length=470, Percent_Identity=32.7659574468085, Blast_Score=205, Evalue=5e-53,
Organism=Caenorhabditis elegans, GI17505833, Length=479, Percent_Identity=28.1837160751566, Blast_Score=106, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17550100, Length=514, Percent_Identity=26.0700389105058, Blast_Score=95, Evalue=8e-20,
Organism=Saccharomyces cerevisiae, GI6320788, Length=482, Percent_Identity=32.5726141078838, Blast_Score=169, Evalue=1e-42,
Organism=Saccharomyces cerevisiae, GI6322511, Length=498, Percent_Identity=28.1124497991968, Blast_Score=149, Evalue=1e-36,
Organism=Saccharomyces cerevisiae, GI6322701, Length=513, Percent_Identity=26.1208576998051, Blast_Score=91, Evalue=4e-19,
Organism=Saccharomyces cerevisiae, GI6322416, Length=479, Percent_Identity=26.3048016701461, Blast_Score=87, Evalue=6e-18,
Organism=Drosophila melanogaster, GI17137288, Length=497, Percent_Identity=26.5593561368209, Blast_Score=97, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24655642, Length=497, Percent_Identity=26.5593561368209, Blast_Score=97, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24655647, Length=497, Percent_Identity=26.5593561368209, Blast_Score=97, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24663005, Length=486, Percent_Identity=26.5432098765432, Blast_Score=93, Evalue=5e-19,

Paralogues:

None

Copy number: 1900 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 1360 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 1100 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003953
- InterPro:   IPR013027
- InterPro:   IPR010960
- InterPro:   IPR011031 [H]

Pfam domain/function: PF00890 FAD_binding_2 [H]

EC number: =1.3.99.1 [H]

Molecular weight: Translated: 62839; Mature: 62839

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKTIIASAILALTVGCSVQDSGKVVTSEGTAFGKHGEIKVQTATKGGQLVSINVLEQK
CCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCEECCCCEEEEEEECCCCEEEEEEEEECC
ENKVLAASVYTEMKDAMINQNTTEVDGISGATVTSNAFKEAVESSLAAAGVSLVAGLAKA
CCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHC
NDTSKAIIETEQNFDVVVIGSGGAGLSAAITAKNAGADVVIIEKMPTVGGNSLITGGQMN
CCCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEECCCCCCCCCEEECCCCC
VPGNWVQKSMGIEDSIDVFVQDTLKGGDYLGDPEMVRLMAEEALPAAEWLRDYIKVDFYP
CCHHHHHHHCCCCCCHHHEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHEECCCH
DQLFQFGGHSVKRALIPRNHTGAEWISKFMAKTDELEIPIHTRTTATALIQDQNGRVIGV
HHHHHHCCHHHHHHHCCCCCCCHHHHHHHHCCCCCEEEEEECCCEEEEEEECCCCCEEEE
EAEKNGQKITYMADRGVIMATGGFGANVAMRTKYVPELDNRYGTTNARGIMGDGIVMAQK
EECCCCCEEEEEECCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEE
LNAKTHNMESIQTYPICHTDTGVISLIADSRFFGAIVVNKEGHRFVEELERRDVISRAIL
CCCCCCCCCCCEEECEEECCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHHH
AQTNQQAYVLWGSEIEQIAETAKVHKDEFNELNRKGMMYKADSIEELASKFGVDKKALMK
HCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHCCCHHHHHH
QVERVNQFAKNGKDSEFNHRGGLKPIMKAPFYMLVAKPSVHHTMGGLMTDTKTRVLDSKG
HHHHHHHHHHCCCCCCCCCCCCCCHHHHCCEEEEEECCCHHHHHCCHHCCCHHHHCCCCC
KVIDGLYAAGEVTGMTHGSNRLGGNAITDITVFGRIAGKEAAAH
CEEEEEEECCEEEEECCCCCCCCCCCEEEEEEEEEECCCCCCCC
>Mature Secondary Structure
MIKKTIIASAILALTVGCSVQDSGKVVTSEGTAFGKHGEIKVQTATKGGQLVSINVLEQK
CCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCEECCCCEEEEEEECCCCEEEEEEEEECC
ENKVLAASVYTEMKDAMINQNTTEVDGISGATVTSNAFKEAVESSLAAAGVSLVAGLAKA
CCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHC
NDTSKAIIETEQNFDVVVIGSGGAGLSAAITAKNAGADVVIIEKMPTVGGNSLITGGQMN
CCCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEECCCCCCCCCEEECCCCC
VPGNWVQKSMGIEDSIDVFVQDTLKGGDYLGDPEMVRLMAEEALPAAEWLRDYIKVDFYP
CCHHHHHHHCCCCCCHHHEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHEECCCH
DQLFQFGGHSVKRALIPRNHTGAEWISKFMAKTDELEIPIHTRTTATALIQDQNGRVIGV
HHHHHHCCHHHHHHHCCCCCCCHHHHHHHHCCCCCEEEEEECCCEEEEEEECCCCCEEEE
EAEKNGQKITYMADRGVIMATGGFGANVAMRTKYVPELDNRYGTTNARGIMGDGIVMAQK
EECCCCCEEEEEECCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEE
LNAKTHNMESIQTYPICHTDTGVISLIADSRFFGAIVVNKEGHRFVEELERRDVISRAIL
CCCCCCCCCCCEEECEEECCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHHH
AQTNQQAYVLWGSEIEQIAETAKVHKDEFNELNRKGMMYKADSIEELASKFGVDKKALMK
HCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHCCCHHHHHH
QVERVNQFAKNGKDSEFNHRGGLKPIMKAPFYMLVAKPSVHHTMGGLMTDTKTRVLDSKG
HHHHHHHHHHCCCCCCCCCCCCCCHHHHCCEEEEEECCCHHHHHCCHHCCCHHHHCCCCC
KVIDGLYAAGEVTGMTHGSNRLGGNAITDITVFGRIAGKEAAAH
CEEEEEEECCEEEEECCCCCCCCCCCEEEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10455032; 10581549 [H]