| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624756
Identifier: 167624756
GI number: 167624756
Start: 3453255
End: 3456185
Strand: Reverse
Name: 167624756
Synonym: Shal_2840
Alternate gene names: NA
Gene position: 3456185-3453255 (Counterclockwise)
Preceding gene: 167624762
Following gene: 167624755
Centisome position: 66.12
GC content: 48.55
Gene sequence:
>2931_bases ATGTCAACAGATCCAACTAAGCCACAAATACACACTGGTAAGTTTAAAGTTCACGCTTTAGCGCTTGCCTGCTCAGCTAT TCTTTTTCCCGGTACTGCATTCGCGACTTCTGAGGTCGCACCGACGGCCAAAGAATCATCAAAGGCCGCTCATGGTAAAG AGCTGCAGAGCCGCTTTGAAAAAGGCGCTAATATTCCAGGCCAGCAGAAGAGTGCAGAGAAAAACCAACGTCAGCATCCG ATCAAGGGGAAAGCTGAAAAAAAGATTGAAGGGCCGATGGGAGCATCTGGCCCGACAGCTGAAGCCGAAGACAATATGTG TAGCAGTGAGTTAGCCAACCTAAGCGGTGAAGCGCTGTTTGATGCCGTTAGACAAGCGGAGATCTCATGTATCTCTGAGT TGTACTCTAGAAATGATGCCGTCTCGGTTGCCGCCTATCAGACAGAAAATGTGGTTTCAGTTGCCAATCAAGCAGCCGCT ATTGCAGCAACCTATGACAGCAGCACAGGTTACGAAATGCGTAACCTGTTCTACTTCTTGCGCGGTGCATTTTATATTGA GTTTTACAATGATGATTTAGCTTATAGCGACACCCAAGCCGCAGATGCGGTTTATGCTGCGTTAGTTGAATATGCGAAGA ATCCAAAGCTTTTTGAGATCACTCCTTCTGCGGGTGATACTTTGATGGAGTTCTTTACATCGTGGGCGAGCAGCGATCAC ATCCTAGAGAGTGTGCCCGTGATCACCGATTACTTGCAGATGTTTAACGCAGACTTTCTTGCTAGCAATCGCCACCGCGC CGCAATGACGAGCGCATTAACCACGCTTTACTACGGAAGCTGGGAAGAGGCTTACAACAGCAAAGCCATGGAGCATGGCG AGCTAATCGATGCGCTACTGAACATTGCCACTGCTGATTATATTATTAACTCAGACTACCAGTATGAGTCGACCGATGCC TTTCATGAGTTTGGTCGCTTCTATGAGTATCAAAAGTACTGGGATCTTCCGCAAAGCTTGAAAACGCGCCTCAATGACGG TGTTGAGCTGTATATGAGTAAGTTTGAGCGCATGTCTGCACAGTGGGCTGACGGTGCAGGTTACTTAGATTATTACAATC CTGGTGACTGTGAGCAGTTCGGTATTTGTGGGTGGGAAGAGGAGCTTGAACAAACGGCTCTACCAATCAATTACAGCTGT AGCGATACCATCTACATTCGCGCCCAGCAGTTAACCAACGATGAGCTCCAAAGCTCTTGCGATCTTATGGGCGGTGAAGA GACACTATTCCATGACGTGCTTGCAACGGGTTATCAGCCAGTAGCCGATGACTTGAATGAAAGCCTAGAAGTGAACATCT TCGACAGTTACGATGATTATGCCCAGTACGCAAGTGTGATTTTTGGGATCAATACCAACAACGGTGGCATGTACTTAGAA GGCACGCCCTCTCAAGAGGGCAATCATGCACGCTTTATTGCTCATGAAGCCACCTGGACTGACGAGATCTTGGTGTGGAA CTTAAAGCATGAGTATGTACATTACCTCGATGGCCGTTTTAACCTTTATGGCGCGTTTAACTACTTCGATATTGATACCG GCAAGTCGGTATGGTGGACAGAAGGCTTGGCTGAATATATCTCGAAGCAAAACCGTAATGACGGTGCTATCGAGTTGGGG CGCTCACAGGCTTATAGCCTAAGTGAGATTCTCTCGAATACTTATGATAGTGGTTCTGACCGAGTCTATAGCTGGGGCTA CTTAGCGGTTCGCTTCCTATTTGAAAATCACAGAAGTGATGTCGATGCACTATTAGTGCTAGCTCGTGGCGGCGATGCTG ATGGCTGGTTAGCCTATATCGATAATACCATTGGCCAGAACTATAACAGCGAGTGGAACACCTGGTTGGCGTCAGTGAGC AGTAATGATGACTCAATCAGCACAGGCATTACTCCGCCAGTTGACTCTGATGGAGATGGTGTTATTGATAGTCAAGATGC CTTCCCGCATGATCCGAGTGAAACTCATGACACTGACGGTGATGGTGTGGGCGATAACGCCGATGCATTCCCAACCGATG CCAATGAAACAGTCGATACCGACGGCGACGGTGTCGGTGACAATGGCGATGTGTTCCCAACCGATCCAACTGAGTGGGCT GATTCTGATGGCGACGGAATTGGTGATAATGCCGATACCGATGGGCCTGTAGACCCTGTTGATCCGGTAGAGCCTGTCGA GCATTGCGGCGCGATATCCATTACCGACGGTAAGTTAACACAGGAGCAGACTGAGTGTGTTGCAGGTAGTGATATCAACT ACTTCTACACCTATGTTGAACAAGATAACACACCGCTTTATATCACGACATCGGGTGGTGAAGGTGATGTTGACCTGTTC TTCAACCAAGAAATTTGGGCCAAGCCGTCAGCTTATACCGCTAAAGCGACAGCAGCGGGTAATGACGAACAGCTAAACGT TATCGCTAACCGAGGTTGGGTATACATTAGCCTTGTGGCAACTGCTGAGTATGAAGGGGTTAGCTTAAGTGTGAGCTTAA CTGATGGTGGCGATACTGGCACGCCCCCTGTGTTAGTGGCTGATGCGTGTGCGACACAATCTCCTTATAGCTATGGTGGT GTCGAGTTCGGTGAAGCCGTCTGTATTGCAGACGGCCACTCAAGCTACTACTTCTATGTTCCGGCGGGTACTGAAGAGAT TAGCGTAGCCAGTGGTCATGGCAGCGGCGATGTGAACCTTTATGGCAACAGCCAAACATGGGCTGGAGTCGACTCGTATG AGGTGAAGTCTGAGAGTAGCGGTAACGTAGAGAGTCTAACCATTGCCACACCTGTGGAAGGTTGGTACTACATCAGTGCC GATGGCGCACCATCGAGTGAAGGTGCAAGCCTAGTGGTTGATATTAAGTAA
Upstream 100 bases:
>100_bases ATGCGATAACTAAACCAATAAGTAAACCAATACTAGTCCGCTTATCACTTCCCTGTATTAGGTGATTTAAGGAGAGAGTC GCAAACAATTGGAGTTAAAT
Downstream 100 bases:
>100_bases GCTAGGATATTAAGAACAATAGTTCGATTATCAGTAACCAAAGCCGACTCCTAAAGGGTCGGCTTTTTTTACATTAAAAA TACCTTAGTTAAATTATCTT
Product: collagenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 976; Mature: 975
Protein sequence:
>976_residues MSTDPTKPQIHTGKFKVHALALACSAILFPGTAFATSEVAPTAKESSKAAHGKELQSRFEKGANIPGQQKSAEKNQRQHP IKGKAEKKIEGPMGASGPTAEAEDNMCSSELANLSGEALFDAVRQAEISCISELYSRNDAVSVAAYQTENVVSVANQAAA IAATYDSSTGYEMRNLFYFLRGAFYIEFYNDDLAYSDTQAADAVYAALVEYAKNPKLFEITPSAGDTLMEFFTSWASSDH ILESVPVITDYLQMFNADFLASNRHRAAMTSALTTLYYGSWEEAYNSKAMEHGELIDALLNIATADYIINSDYQYESTDA FHEFGRFYEYQKYWDLPQSLKTRLNDGVELYMSKFERMSAQWADGAGYLDYYNPGDCEQFGICGWEEELEQTALPINYSC SDTIYIRAQQLTNDELQSSCDLMGGEETLFHDVLATGYQPVADDLNESLEVNIFDSYDDYAQYASVIFGINTNNGGMYLE GTPSQEGNHARFIAHEATWTDEILVWNLKHEYVHYLDGRFNLYGAFNYFDIDTGKSVWWTEGLAEYISKQNRNDGAIELG RSQAYSLSEILSNTYDSGSDRVYSWGYLAVRFLFENHRSDVDALLVLARGGDADGWLAYIDNTIGQNYNSEWNTWLASVS SNDDSISTGITPPVDSDGDGVIDSQDAFPHDPSETHDTDGDGVGDNADAFPTDANETVDTDGDGVGDNGDVFPTDPTEWA DSDGDGIGDNADTDGPVDPVDPVEPVEHCGAISITDGKLTQEQTECVAGSDINYFYTYVEQDNTPLYITTSGGEGDVDLF FNQEIWAKPSAYTAKATAAGNDEQLNVIANRGWVYISLVATAEYEGVSLSVSLTDGGDTGTPPVLVADACATQSPYSYGG VEFGEAVCIADGHSSYYFYVPAGTEEISVASGHGSGDVNLYGNSQTWAGVDSYEVKSESSGNVESLTIATPVEGWYYISA DGAPSSEGASLVVDIK
Sequences:
>Translated_976_residues MSTDPTKPQIHTGKFKVHALALACSAILFPGTAFATSEVAPTAKESSKAAHGKELQSRFEKGANIPGQQKSAEKNQRQHP IKGKAEKKIEGPMGASGPTAEAEDNMCSSELANLSGEALFDAVRQAEISCISELYSRNDAVSVAAYQTENVVSVANQAAA IAATYDSSTGYEMRNLFYFLRGAFYIEFYNDDLAYSDTQAADAVYAALVEYAKNPKLFEITPSAGDTLMEFFTSWASSDH ILESVPVITDYLQMFNADFLASNRHRAAMTSALTTLYYGSWEEAYNSKAMEHGELIDALLNIATADYIINSDYQYESTDA FHEFGRFYEYQKYWDLPQSLKTRLNDGVELYMSKFERMSAQWADGAGYLDYYNPGDCEQFGICGWEEELEQTALPINYSC SDTIYIRAQQLTNDELQSSCDLMGGEETLFHDVLATGYQPVADDLNESLEVNIFDSYDDYAQYASVIFGINTNNGGMYLE GTPSQEGNHARFIAHEATWTDEILVWNLKHEYVHYLDGRFNLYGAFNYFDIDTGKSVWWTEGLAEYISKQNRNDGAIELG RSQAYSLSEILSNTYDSGSDRVYSWGYLAVRFLFENHRSDVDALLVLARGGDADGWLAYIDNTIGQNYNSEWNTWLASVS SNDDSISTGITPPVDSDGDGVIDSQDAFPHDPSETHDTDGDGVGDNADAFPTDANETVDTDGDGVGDNGDVFPTDPTEWA DSDGDGIGDNADTDGPVDPVDPVEPVEHCGAISITDGKLTQEQTECVAGSDINYFYTYVEQDNTPLYITTSGGEGDVDLF FNQEIWAKPSAYTAKATAAGNDEQLNVIANRGWVYISLVATAEYEGVSLSVSLTDGGDTGTPPVLVADACATQSPYSYGG VEFGEAVCIADGHSSYYFYVPAGTEEISVASGHGSGDVNLYGNSQTWAGVDSYEVKSESSGNVESLTIATPVEGWYYISA DGAPSSEGASLVVDIK >Mature_975_residues STDPTKPQIHTGKFKVHALALACSAILFPGTAFATSEVAPTAKESSKAAHGKELQSRFEKGANIPGQQKSAEKNQRQHPI KGKAEKKIEGPMGASGPTAEAEDNMCSSELANLSGEALFDAVRQAEISCISELYSRNDAVSVAAYQTENVVSVANQAAAI AATYDSSTGYEMRNLFYFLRGAFYIEFYNDDLAYSDTQAADAVYAALVEYAKNPKLFEITPSAGDTLMEFFTSWASSDHI LESVPVITDYLQMFNADFLASNRHRAAMTSALTTLYYGSWEEAYNSKAMEHGELIDALLNIATADYIINSDYQYESTDAF HEFGRFYEYQKYWDLPQSLKTRLNDGVELYMSKFERMSAQWADGAGYLDYYNPGDCEQFGICGWEEELEQTALPINYSCS DTIYIRAQQLTNDELQSSCDLMGGEETLFHDVLATGYQPVADDLNESLEVNIFDSYDDYAQYASVIFGINTNNGGMYLEG TPSQEGNHARFIAHEATWTDEILVWNLKHEYVHYLDGRFNLYGAFNYFDIDTGKSVWWTEGLAEYISKQNRNDGAIELGR SQAYSLSEILSNTYDSGSDRVYSWGYLAVRFLFENHRSDVDALLVLARGGDADGWLAYIDNTIGQNYNSEWNTWLASVSS NDDSISTGITPPVDSDGDGVIDSQDAFPHDPSETHDTDGDGVGDNADAFPTDANETVDTDGDGVGDNGDVFPTDPTEWAD SDGDGIGDNADTDGPVDPVDPVEPVEHCGAISITDGKLTQEQTECVAGSDINYFYTYVEQDNTPLYITTSGGEGDVDLFF NQEIWAKPSAYTAKATAAGNDEQLNVIANRGWVYISLVATAEYEGVSLSVSLTDGGDTGTPPVLVADACATQSPYSYGGV EFGEAVCIADGHSSYYFYVPAGTEEISVASGHGSGDVNLYGNSQTWAGVDSYEVKSESSGNVESLTIATPVEGWYYISAD GAPSSEGASLVVDIK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PKD domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013510 - InterPro: IPR002169 - InterPro: IPR013661 - InterPro: IPR022409 - InterPro: IPR000601 [H]
Pfam domain/function: PF01752 Peptidase_M9; PF08453 Peptidase_M9_N; PF00801 PKD [H]
EC number: =3.4.24.3 [H]
Molecular weight: Translated: 106442; Mature: 106311
Theoretical pI: Translated: 3.87; Mature: 3.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTDPTKPQIHTGKFKVHALALACSAILFPGTAFATSEVAPTAKESSKAAHGKELQSRFE CCCCCCCCCEECCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH KGANIPGQQKSAEKNQRQHPIKGKAEKKIEGPMGASGPTAEAEDNMCSSELANLSGEALF HCCCCCCCCHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHH DAVRQAEISCISELYSRNDAVSVAAYQTENVVSVANQAAAIAATYDSSTGYEMRNLFYFL HHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHCCEEEEEECCCCCCHHHHHHHHHH RGAFYIEFYNDDLAYSDTQAADAVYAALVEYAKNPKLFEITPSAGDTLMEFFTSWASSDH CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCH ILESVPVITDYLQMFNADFLASNRHRAAMTSALTTLYYGSWEEAYNSKAMEHGELIDALL HHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH NIATADYIINSDYQYESTDAFHEFGRFYEYQKYWDLPQSLKTRLNDGVELYMSKFERMSA HHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHC QWADGAGYLDYYNPGDCEQFGICGWEEELEQTALPINYSCSDTIYIRAQQLTNDELQSSC CCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEEHHHCCHHHHHHH DLMGGEETLFHDVLATGYQPVADDLNESLEVNIFDSYDDYAQYASVIFGINTNNGGMYLE HCCCCCHHHHHHHHHCCCCHHHHHCCCCEEEEEECCHHHHHHHEEEEEEEEECCCCEEEE GTPSQEGNHARFIAHEATWTDEILVWNLKHEYVHYLDGRFNLYGAFNYFDIDTGKSVWWT CCCCCCCCCEEEEEECCCCCCCEEEEECCHHHHHHHCCEEEEEEEEEEEECCCCCCCHHH EGLAEYISKQNRNDGAIELGRSQAYSLSEILSNTYDSGSDRVYSWGYLAVRFLFENHRSD HHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHCCCC VDALLVLARGGDADGWLAYIDNTIGQNYNSEWNTWLASVSSNDDSISTGITPPVDSDGDG CEEEEEEEECCCCCCEEEEEEHHHCCCCCCCHHHEEEEECCCCCCCCCCCCCCCCCCCCC VIDSQDAFPHDPSETHDTDGDGVGDNADAFPTDANETVDTDGDGVGDNGDVFPTDPTEWA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC DSDGDGIGDNADTDGPVDPVDPVEPVEHCGAISITDGKLTQEQTECVAGSDINYFYTYVE CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCCCHHHHHHHCCCCCEEEEEEEE QDNTPLYITTSGGEGDVDLFFNQEIWAKPSAYTAKATAAGNDEQLNVIANRGWVYISLVA CCCCEEEEEECCCCCCEEEEECCHHHCCCCCCEEEEECCCCCCEEEEEECCCEEEEEEEE TAEYEGVSLSVSLTDGGDTGTPPVLVADACATQSPYSYGGVEFGEAVCIADGHSSYYFYV EECCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCEEEEE PAGTEEISVASGHGSGDVNLYGNSQTWAGVDSYEVKSESSGNVESLTIATPVEGWYYISA ECCCCEEEEECCCCCCCEEEEECCCCCCCCCCEEECCCCCCCEEEEEEEECCCCEEEEEC DGAPSSEGASLVVDIK CCCCCCCCCEEEEEEC >Mature Secondary Structure STDPTKPQIHTGKFKVHALALACSAILFPGTAFATSEVAPTAKESSKAAHGKELQSRFE CCCCCCCCEECCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH KGANIPGQQKSAEKNQRQHPIKGKAEKKIEGPMGASGPTAEAEDNMCSSELANLSGEALF HCCCCCCCCHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHH DAVRQAEISCISELYSRNDAVSVAAYQTENVVSVANQAAAIAATYDSSTGYEMRNLFYFL HHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHCCEEEEEECCCCCCHHHHHHHHHH RGAFYIEFYNDDLAYSDTQAADAVYAALVEYAKNPKLFEITPSAGDTLMEFFTSWASSDH CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCH ILESVPVITDYLQMFNADFLASNRHRAAMTSALTTLYYGSWEEAYNSKAMEHGELIDALL HHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH NIATADYIINSDYQYESTDAFHEFGRFYEYQKYWDLPQSLKTRLNDGVELYMSKFERMSA HHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHC QWADGAGYLDYYNPGDCEQFGICGWEEELEQTALPINYSCSDTIYIRAQQLTNDELQSSC CCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEEHHHCCHHHHHHH DLMGGEETLFHDVLATGYQPVADDLNESLEVNIFDSYDDYAQYASVIFGINTNNGGMYLE HCCCCCHHHHHHHHHCCCCHHHHHCCCCEEEEEECCHHHHHHHEEEEEEEEECCCCEEEE GTPSQEGNHARFIAHEATWTDEILVWNLKHEYVHYLDGRFNLYGAFNYFDIDTGKSVWWT CCCCCCCCCEEEEEECCCCCCCEEEEECCHHHHHHHCCEEEEEEEEEEEECCCCCCCHHH EGLAEYISKQNRNDGAIELGRSQAYSLSEILSNTYDSGSDRVYSWGYLAVRFLFENHRSD HHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHCCCC VDALLVLARGGDADGWLAYIDNTIGQNYNSEWNTWLASVSSNDDSISTGITPPVDSDGDG CEEEEEEEECCCCCCEEEEEEHHHCCCCCCCHHHEEEEECCCCCCCCCCCCCCCCCCCCC VIDSQDAFPHDPSETHDTDGDGVGDNADAFPTDANETVDTDGDGVGDNGDVFPTDPTEWA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC DSDGDGIGDNADTDGPVDPVDPVEPVEHCGAISITDGKLTQEQTECVAGSDINYFYTYVE CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCCCHHHHHHHCCCCCEEEEEEEE QDNTPLYITTSGGEGDVDLFFNQEIWAKPSAYTAKATAAGNDEQLNVIANRGWVYISLVA CCCCEEEEEECCCCCCEEEEECCHHHCCCCCCEEEEECCCCCCEEEEEECCCEEEEEEEE TAEYEGVSLSVSLTDGGDTGTPPVLVADACATQSPYSYGGVEFGEAVCIADGHSSYYFYV EECCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCEEEEE PAGTEEISVASGHGSGDVNLYGNSQTWAGVDSYEVKSESSGNVESLTIATPVEGWYYISA ECCCCEEEEECCCCCCCEEEEECCCCCCCCCCEEECCCCCCCEEEEEEEECCCCEEEEEC DGAPSSEGASLVVDIK CCCCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1311172 [H]