| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624733
Identifier: 167624733
GI number: 167624733
Start: 3424166
End: 3424609
Strand: Reverse
Name: 167624733
Synonym: Shal_2816
Alternate gene names: NA
Gene position: 3424609-3424166 (Counterclockwise)
Preceding gene: 167624734
Following gene: 167624732
Centisome position: 65.52
GC content: 42.79
Gene sequence:
>444_bases ATGAAGGTATTGTCACTATTTTTAAGCCAGGTGTTGTTAGCCTTTTTTATCGTTTGCTTGCCTTTGAAAGCGGCAGATAA TCCCTTTATTGGCAGCTGGAAGTTGGTTTCTGGTAAGTATCTAGACGGTAAAGGTCAGTGGGTTGAATATAGCGACCTAA AACTCAGCGCGATTAAAGTCATCTCCGCTAACCATTTTAGTTTTACTACGATGAAAAATGTGGGTAGTGACGCTAAGCCA ACTTTAGAGTTTTGGGCCGCCGCAACGGGTGATTATGAATATACCGCGACCGATTATATCGAATATCCACACTTAAACTC ATTTGGTGTTAATGCGGGGGAGTCTTTTACTTTCACCTATACCATAGAAGGTAAGGAGTGGCATACCCAGCGCACCGAAG ATGGTGTGTTAAAAGAGCAGGAACATTGGACTAAGCTGGACTAG
Upstream 100 bases:
>100_bases GTTGTACTGACTTGTTATGTAAGTGAATAGGCTGATAAGTGATAAGTGATAAGTGATAAGTGATAAGTGATAAGTGACTC ATTAAACTCAAGGAGGCGTT
Downstream 100 bases:
>100_bases ATTGTAGTAAACCTAACGTTAACTTTTAAGGGGATATGATGAGCAAGAAAGCGGATAGAGATATCGAAAAGGGTTATAGC AATGCTGAGTTTGCCGCCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 147; Mature: 147
Protein sequence:
>147_residues MKVLSLFLSQVLLAFFIVCLPLKAADNPFIGSWKLVSGKYLDGKGQWVEYSDLKLSAIKVISANHFSFTTMKNVGSDAKP TLEFWAAATGDYEYTATDYIEYPHLNSFGVNAGESFTFTYTIEGKEWHTQRTEDGVLKEQEHWTKLD
Sequences:
>Translated_147_residues MKVLSLFLSQVLLAFFIVCLPLKAADNPFIGSWKLVSGKYLDGKGQWVEYSDLKLSAIKVISANHFSFTTMKNVGSDAKP TLEFWAAATGDYEYTATDYIEYPHLNSFGVNAGESFTFTYTIEGKEWHTQRTEDGVLKEQEHWTKLD >Mature_147_residues MKVLSLFLSQVLLAFFIVCLPLKAADNPFIGSWKLVSGKYLDGKGQWVEYSDLKLSAIKVISANHFSFTTMKNVGSDAKP TLEFWAAATGDYEYTATDYIEYPHLNSFGVNAGESFTFTYTIEGKEWHTQRTEDGVLKEQEHWTKLD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16647; Mature: 16647
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVLSLFLSQVLLAFFIVCLPLKAADNPFIGSWKLVSGKYLDGKGQWVEYSDLKLSAIKV CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCEEECCCCCEEEECCCEEEEEEE ISANHFSFTTMKNVGSDAKPTLEFWAAATGDYEYTATDYIEYPHLNSFGVNAGESFTFTY EECCCEEEEEHHHCCCCCCCCEEEEEECCCCCEEEEECEECCCCCCCCCCCCCCEEEEEE TIEGKEWHTQRTEDGVLKEQEHWTKLD EECCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKVLSLFLSQVLLAFFIVCLPLKAADNPFIGSWKLVSGKYLDGKGQWVEYSDLKLSAIKV CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCEEECCCCCEEEECCCEEEEEEE ISANHFSFTTMKNVGSDAKPTLEFWAAATGDYEYTATDYIEYPHLNSFGVNAGESFTFTY EECCCEEEEEHHHCCCCCCCCEEEEEECCCCCEEEEECEECCCCCCCCCCCCCCEEEEEE TIEGKEWHTQRTEDGVLKEQEHWTKLD EECCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA