| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is pgcA [H]
Identifier: 167624727
GI number: 167624727
Start: 3418187
End: 3419920
Strand: Reverse
Name: pgcA [H]
Synonym: Shal_2810
Alternate gene names: 167624727
Gene position: 3419920-3418187 (Counterclockwise)
Preceding gene: 167624729
Following gene: 167624720
Centisome position: 65.43
GC content: 51.44
Gene sequence:
>1734_bases ATGGATACCCAATTAGCATTGAGAGTCAAACACTGGATGGCAACCGATCCCGACTCTTCGAGGCGTCAGGAGCTACAAGC CCTAATAGACTCAGATGATGGCGCTGAGCTTGAAGCGCGTTTTGCGGGGCGACTCGCATTTGGTACCGCGGGATTACGTG GCGTCGTGGGCGCGGGGCCGACTCGAATGAATCGATTAGTGATCCAGCAAACTTCTGCGGGTTTAGCATCATACCTAAAA GCACAAATTAGTGACGTATCAAGCCGCGGCGTAGTGATTGGTTATGACGGTCGCCATGACTCGAAGCAATTCGCCCATGA CGCCGCCTGCGTATTAACGGCGATGGGAATTAAAGTCTATCTCACAGCAAATGTTGCTGCGACGCCGCTGTTGGCCTTTG GTGTGCTTCACCTTGGCTGCGCAGCGGGTGTTGTGGTCACCGCGAGTCATAATCCGCCGCAATATAACGGCTACAAGGTC TATTGGGGCAATGGCGCGCAGATCATTCCTCCCCACGACTCGGGTATCGCGGCTTGTATCGATAAAGCTGCGACCGAGGC TATTCCATTGTTGGAGATCCAGCAGGCCAAGGCCTCAGGCCTGCTGGTCATGCTAGAGGATGATTTTTATGATGCTTATC GCCAAGGTGTAAAGCAGGCGGCAGTATTGCAAAATCATACTCAGCCAGAGTCTGTCAGTTTGGCTTACACGGCCATGCAT GGCGTGGGTAACGCGATGGCGCTTAATGTGCTGAAAGATGCCGGATTCACAAAAGTTTATTCAGTTGCCGAGCAGGCGTT GCCCGATGGTGATTTCCCAACGGTGAACTTTCCTAACCCCGAAGAGAAAGGGGCGATGGATAGGGTGATAGCCGAGGCCA AAAAGCATAACGCTATGCTTGCCTGCGCTAACGATCCCGATGCCGACCGTTTCGCCGTTGCGGTGCGAACCTATGATGGT GAGTATCAGATGCTTACTGGCGACCAAGTTGGTGTGTTATTTGGCCATTACCTATTAACCCATGCCAGTGATGATCAGCG CTTAACTTGCACCACGATTGTGTCATCGAGTTTATTGTCAAGGGTCGCACAGAGCCTCAATGCGACTTGCCTAACAACTT TAACCGGTTTTAAGTGGCTGACTAATGTCGGCATGAGTGAAGAGACAGACGATAACCGCTTCCTATTTGCCTACGAAGAG GCGCTCGGTTACACCGTTGGCTCTATGGTGTGGGATAAAGATGGTTTATCGGCACTGGTCGCATTTGCTCAGTTAACCGC TGAGCTTACCAGCCAAGGGCAAACTATTTGGGACCGTCTTGAAGCCATCTATCGTGAACATGGTTTTCATCTCAACGCCC AGGTAAGTATTGCCCTTAAACCGACGACGCCAAATATCGGCGCCTATTTACGTGAGCATCCCCCCGTTGAGATAGCAGGA CATAAGGTGGTCTCGACTGATGATATCAGTATTGGTAAGCGCTTCTTTTCTGGTGGGAGTGCCGATGGCACAGAAGAAGA GATCGCGCTACCCGCTAGTGATGTGCTGATTTATCGTCTTGAAAATGGTGCTCGAGTGATCGTCAGACCGTCGGGCACTG AACCTAAGATTAAGTGTTACTACGAGGTGGTAGAAGCGATGTCGTCAGAAGACACATTAGTCAGCGCGCAGCAAAGAGCT CAATCGACTATGGATGATTTTATCGCTGCGCATCAGGCGGCGCTACCGAAGTAG
Upstream 100 bases:
>100_bases CTAGGCTTAGTGTTTAGTAATGTTTTACAGTCGTAATGTGCTGCGCTTGGTTCAATATTCTTTAGCGGCCATTACCCATC GATAGTAAATGGAGCGAGTT
Downstream 100 bases:
>100_bases GATCTATTAGATATGCAGGACTAGTCGGCTTTGTTGACTGACTGGCGAGTCGCTCACATGGGGAGGGGCGGCAAATAGGG ACTTTCTGTCACGGTAGGTG
Product: phosphoglucomutase/phosphomannomutase subunit alpha/beta
Products: NA
Alternate protein names: PGM; Alpha-phosphoglucomutase; Glucose phosphomutase [H]
Number of amino acids: Translated: 577; Mature: 577
Protein sequence:
>577_residues MDTQLALRVKHWMATDPDSSRRQELQALIDSDDGAELEARFAGRLAFGTAGLRGVVGAGPTRMNRLVIQQTSAGLASYLK AQISDVSSRGVVIGYDGRHDSKQFAHDAACVLTAMGIKVYLTANVAATPLLAFGVLHLGCAAGVVVTASHNPPQYNGYKV YWGNGAQIIPPHDSGIAACIDKAATEAIPLLEIQQAKASGLLVMLEDDFYDAYRQGVKQAAVLQNHTQPESVSLAYTAMH GVGNAMALNVLKDAGFTKVYSVAEQALPDGDFPTVNFPNPEEKGAMDRVIAEAKKHNAMLACANDPDADRFAVAVRTYDG EYQMLTGDQVGVLFGHYLLTHASDDQRLTCTTIVSSSLLSRVAQSLNATCLTTLTGFKWLTNVGMSEETDDNRFLFAYEE ALGYTVGSMVWDKDGLSALVAFAQLTAELTSQGQTIWDRLEAIYREHGFHLNAQVSIALKPTTPNIGAYLREHPPVEIAG HKVVSTDDISIGKRFFSGGSADGTEEEIALPASDVLIYRLENGARVIVRPSGTEPKIKCYYEVVEAMSSEDTLVSAQQRA QSTMDDFIAAHQAALPK
Sequences:
>Translated_577_residues MDTQLALRVKHWMATDPDSSRRQELQALIDSDDGAELEARFAGRLAFGTAGLRGVVGAGPTRMNRLVIQQTSAGLASYLK AQISDVSSRGVVIGYDGRHDSKQFAHDAACVLTAMGIKVYLTANVAATPLLAFGVLHLGCAAGVVVTASHNPPQYNGYKV YWGNGAQIIPPHDSGIAACIDKAATEAIPLLEIQQAKASGLLVMLEDDFYDAYRQGVKQAAVLQNHTQPESVSLAYTAMH GVGNAMALNVLKDAGFTKVYSVAEQALPDGDFPTVNFPNPEEKGAMDRVIAEAKKHNAMLACANDPDADRFAVAVRTYDG EYQMLTGDQVGVLFGHYLLTHASDDQRLTCTTIVSSSLLSRVAQSLNATCLTTLTGFKWLTNVGMSEETDDNRFLFAYEE ALGYTVGSMVWDKDGLSALVAFAQLTAELTSQGQTIWDRLEAIYREHGFHLNAQVSIALKPTTPNIGAYLREHPPVEIAG HKVVSTDDISIGKRFFSGGSADGTEEEIALPASDVLIYRLENGARVIVRPSGTEPKIKCYYEVVEAMSSEDTLVSAQQRA QSTMDDFIAAHQAALPK >Mature_577_residues MDTQLALRVKHWMATDPDSSRRQELQALIDSDDGAELEARFAGRLAFGTAGLRGVVGAGPTRMNRLVIQQTSAGLASYLK AQISDVSSRGVVIGYDGRHDSKQFAHDAACVLTAMGIKVYLTANVAATPLLAFGVLHLGCAAGVVVTASHNPPQYNGYKV YWGNGAQIIPPHDSGIAACIDKAATEAIPLLEIQQAKASGLLVMLEDDFYDAYRQGVKQAAVLQNHTQPESVSLAYTAMH GVGNAMALNVLKDAGFTKVYSVAEQALPDGDFPTVNFPNPEEKGAMDRVIAEAKKHNAMLACANDPDADRFAVAVRTYDG EYQMLTGDQVGVLFGHYLLTHASDDQRLTCTTIVSSSLLSRVAQSLNATCLTTLTGFKWLTNVGMSEETDDNRFLFAYEE ALGYTVGSMVWDKDGLSALVAFAQLTAELTSQGQTIWDRLEAIYREHGFHLNAQVSIALKPTTPNIGAYLREHPPVEIAG HKVVSTDDISIGKRFFSGGSADGTEEEIALPASDVLIYRLENGARVIVRPSGTEPKIKCYYEVVEAMSSEDTLVSAQQRA QSTMDDFIAAHQAALPK
Specific function: Catalyzes the interconversion between glucose-6- phosphate and alpha-glucose-1-phosphate. This is the first step in the biosynthesis of diglucosyl-diacylglycerol (Glc2-DAG), i.e. the predominant glycolipid found in B.subtilis membrane, which is also used
COG id: COG1109
COG function: function code G; Phosphomannomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphohexose mutase family [H]
Homologues:
Organism=Homo sapiens, GI63055049, Length=575, Percent_Identity=34.0869565217391, Blast_Score=322, Evalue=5e-88, Organism=Homo sapiens, GI31377548, Length=573, Percent_Identity=32.2862129144852, Blast_Score=285, Evalue=1e-76, Organism=Caenorhabditis elegans, GI71993870, Length=557, Percent_Identity=34.4703770197487, Blast_Score=315, Evalue=4e-86, Organism=Caenorhabditis elegans, GI71993878, Length=314, Percent_Identity=37.2611464968153, Blast_Score=210, Evalue=2e-54, Organism=Saccharomyces cerevisiae, GI6323934, Length=582, Percent_Identity=35.3951890034364, Blast_Score=285, Evalue=2e-77, Organism=Drosophila melanogaster, GI20129809, Length=573, Percent_Identity=36.3001745200698, Blast_Score=328, Evalue=7e-90, Organism=Drosophila melanogaster, GI24651977, Length=557, Percent_Identity=35.7271095152603, Blast_Score=310, Evalue=3e-84, Organism=Drosophila melanogaster, GI24653722, Length=606, Percent_Identity=30.5280528052805, Blast_Score=254, Evalue=1e-67,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005844 - InterPro: IPR016055 - InterPro: IPR005845 - InterPro: IPR005846 - InterPro: IPR005843 - InterPro: IPR016066 - InterPro: IPR005841 [H]
Pfam domain/function: PF02878 PGM_PMM_I; PF02879 PGM_PMM_II; PF02880 PGM_PMM_III; PF00408 PGM_PMM_IV [H]
EC number: =5.4.2.2 [H]
Molecular weight: Translated: 62169; Mature: 62169
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: PS00710 PGM_PMM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTQLALRVKHWMATDPDSSRRQELQALIDSDDGAELEARFAGRLAFGTAGLRGVVGAGP CCCCEEEEEEHHCCCCCCHHHHHHHHHHHCCCCCCEEEHHHHCEEEECCCCCCCCCCCCH TRMNRLVIQQTSAGLASYLKAQISDVSSRGVVIGYDGRHDSKQFAHDAACVLTAMGIKVY HHHHEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEE LTANVAATPLLAFGVLHLGCAAGVVVTASHNPPQYNGYKVYWGNGAQIIPPHDSGIAACI EEECCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEECCCCEEECCCCCCHHHHH DKAATEAIPLLEIQQAKASGLLVMLEDDFYDAYRQGVKQAAVLQNHTQPESVSLAYTAMH HHHHHHCCCHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHH GVGNAMALNVLKDAGFTKVYSVAEQALPDGDFPTVNFPNPEEKGAMDRVIAEAKKHNAML CCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEE ACANDPDADRFAVAVRTYDGEYQMLTGDQVGVLFGHYLLTHASDDQRLTCTTIVSSSLLS EECCCCCCCEEEEEEEEECCCEEEEECCCHHHHHHHHHHEECCCCCEEEHHHHHHHHHHH RVAQSLNATCLTTLTGFKWLTNVGMSEETDDNRFLFAYEEALGYTVGSMVWDKDGLSALV HHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHCCHHHHHEECCCCHHHHH AFAQLTAELTSQGQTIWDRLEAIYREHGFHLNAQVSIALKPTTPNIGAYLREHPPVEIAG HHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCHHHHHHCCCCEEECC HKVVSTDDISIGKRFFSGGSADGTEEEIALPASDVLIYRLENGARVIVRPSGTEPKIKCY CEEEECCCHHHHHHHHCCCCCCCCCCCEECCCCCEEEEEECCCCEEEEECCCCCCHHHHH YEVVEAMSSEDTLVSAQQRAQSTMDDFIAAHQAALPK HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MDTQLALRVKHWMATDPDSSRRQELQALIDSDDGAELEARFAGRLAFGTAGLRGVVGAGP CCCCEEEEEEHHCCCCCCHHHHHHHHHHHCCCCCCEEEHHHHCEEEECCCCCCCCCCCCH TRMNRLVIQQTSAGLASYLKAQISDVSSRGVVIGYDGRHDSKQFAHDAACVLTAMGIKVY HHHHEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEE LTANVAATPLLAFGVLHLGCAAGVVVTASHNPPQYNGYKVYWGNGAQIIPPHDSGIAACI EEECCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEECCCCEEECCCCCCHHHHH DKAATEAIPLLEIQQAKASGLLVMLEDDFYDAYRQGVKQAAVLQNHTQPESVSLAYTAMH HHHHHHCCCHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHH GVGNAMALNVLKDAGFTKVYSVAEQALPDGDFPTVNFPNPEEKGAMDRVIAEAKKHNAML CCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEE ACANDPDADRFAVAVRTYDGEYQMLTGDQVGVLFGHYLLTHASDDQRLTCTTIVSSSLLS EECCCCCCCEEEEEEEEECCCEEEEECCCHHHHHHHHHHEECCCCCEEEHHHHHHHHHHH RVAQSLNATCLTTLTGFKWLTNVGMSEETDDNRFLFAYEEALGYTVGSMVWDKDGLSALV HHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHCCHHHHHEECCCCHHHHH AFAQLTAELTSQGQTIWDRLEAIYREHGFHLNAQVSIALKPTTPNIGAYLREHPPVEIAG HHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCHHHHHHCCCCEEECC HKVVSTDDISIGKRFFSGGSADGTEEEIALPASDVLIYRLENGARVIVRPSGTEPKIKCY CEEEECCCHHHHHHHHCCCCCCCCCCCEECCCCCEEEEEECCCCEEEEECCCCCCHHHHH YEVVEAMSSEDTLVSAQQRAQSTMDDFIAAHQAALPK HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377; 2127799 [H]