| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624641
Identifier: 167624641
GI number: 167624641
Start: 3300749
End: 3301231
Strand: Reverse
Name: 167624641
Synonym: Shal_2723
Alternate gene names: NA
Gene position: 3301231-3300749 (Counterclockwise)
Preceding gene: 167624642
Following gene: 167624640
Centisome position: 63.16
GC content: 48.24
Gene sequence:
>483_bases ATGGCCGCCGGGGGCGACGTCCTCTGGTTGGTAGCGGCAGTGTTGTTTGCTATGTGGGTATTGATGCTTGAGCGTTACTG GTATCTCAATTGGGTATCACCAAAAGCGCACAAAGCAATCATTACGGCATGGGAAGCGCGAGAGGATTCAACCTCTTGGT ACGCACACCGCATCCGTGAAGCTTGGGTATCCCAAGCGAAGCAAGATTTAACTGCACGTATGCTGCTTATCAAAACCTTA GTTGCTATCTGTCCTATGATAGGTCTACTAGGTACCGTAACCGGTATGATTTCAGTGTTCGATGTGATGGCAGTTCATGG GACGAGTAATGCTCGTATGATGGCAGCTGGTATTTCAATGGCGACCATGCCGACAATGGCTGGAATGGTCGCAGCATTAT CGGGAGTATTCTTTAGTACTCGTCTCGATGCGAAAATGAAAATCAGTTTAGCAAAGCTAAAAGACAGCATGCCTCACCAC TAG
Upstream 100 bases:
>100_bases TCCTTGAAGAGCAAAGCGCGGGTATCGTTGCATCGCACGCTGAGAAGAGGAAAGCCTAATGTTATTCCTGATGGATATGT GGGATTCCGTCAGGGGCTTC
Downstream 100 bases:
>100_bases AGAGAGATTGAACATGGCACGTAGAAAGCATTCAAGCGTAGACGAAGAAGCTGAGATTGATATGACCCCGATGCTCGACA TCGTGTTCATCATGCTTATC
Product: MotA/TolQ/ExbB proton channel
Products: NA
Alternate protein names: NB System Transport; NB System Biopolymer Transport Component; MotA/lQ/ExbB Proton Channel Family Protein; LQ Protein; Transporter MotA/lQ/ExbB Proton Channel Family; Outer Membrane Transport Energization Protein ExbB; Biopolymer Transport ExbB Protein; L Protein; NB System Transport Protein ExbB; Biopolymer Transport; MotA/lQ/ExbB Proton Channel Family Domain Protein; Biopolymer Transport Protein lR; Biopolymer Transport Protein ExbB-Like
Number of amino acids: Translated: 160; Mature: 159
Protein sequence:
>160_residues MAAGGDVLWLVAAVLFAMWVLMLERYWYLNWVSPKAHKAIITAWEAREDSTSWYAHRIREAWVSQAKQDLTARMLLIKTL VAICPMIGLLGTVTGMISVFDVMAVHGTSNARMMAAGISMATMPTMAGMVAALSGVFFSTRLDAKMKISLAKLKDSMPHH
Sequences:
>Translated_160_residues MAAGGDVLWLVAAVLFAMWVLMLERYWYLNWVSPKAHKAIITAWEAREDSTSWYAHRIREAWVSQAKQDLTARMLLIKTL VAICPMIGLLGTVTGMISVFDVMAVHGTSNARMMAAGISMATMPTMAGMVAALSGVFFSTRLDAKMKISLAKLKDSMPHH >Mature_159_residues AAGGDVLWLVAAVLFAMWVLMLERYWYLNWVSPKAHKAIITAWEAREDSTSWYAHRIREAWVSQAKQDLTARMLLIKTLV AICPMIGLLGTVTGMISVFDVMAVHGTSNARMMAAGISMATMPTMAGMVAALSGVFFSTRLDAKMKISLAKLKDSMPHH
Specific function: Unknown
COG id: COG0811
COG function: function code U; Biopolymer transport proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17661; Mature: 17530
Theoretical pI: Translated: 10.14; Mature: 10.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 9.4 %Met (Translated Protein) 10.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 8.8 %Met (Mature Protein) 9.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAGGDVLWLVAAVLFAMWVLMLERYWYLNWVSPKAHKAIITAWEAREDSTSWYAHRIRE CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH AWVSQAKQDLTARMLLIKTLVAICPMIGLLGTVTGMISVFDVMAVHGTSNARMMAAGISM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHH ATMPTMAGMVAALSGVFFSTRLDAKMKISLAKLKDSMPHH HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC >Mature Secondary Structure AAGGDVLWLVAAVLFAMWVLMLERYWYLNWVSPKAHKAIITAWEAREDSTSWYAHRIRE CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH AWVSQAKQDLTARMLLIKTLVAICPMIGLLGTVTGMISVFDVMAVHGTSNARMMAAGISM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHH ATMPTMAGMVAALSGVFFSTRLDAKMKISLAKLKDSMPHH HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA