| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is bla [H]
Identifier: 167624628
GI number: 167624628
Start: 3289469
End: 3290326
Strand: Reverse
Name: bla [H]
Synonym: Shal_2710
Alternate gene names: 167624628
Gene position: 3290326-3289469 (Counterclockwise)
Preceding gene: 167624629
Following gene: 167624625
Centisome position: 62.95
GC content: 43.94
Gene sequence:
>858_bases ATGAGTGTGCTTAAACCTAGCGATATAAAGACAAATAACAATACGGGATATTGGGCACGTCTTTTTCTTCCGCTAGCGGT TTTTATTACCACACCTTTTCAGGTGTCGGCAGCACTTGAGGAACGTTCTGATTGGCAGCAATATTTTAATCACTACGATG CCAAGGGGACGATAGTGGTGCGCGATGAGCGCGGCCCTAAAGCCAAGCTCTGGGTTGTTGATAGTGAGCGTGCCCAGCAG AGGTTTTCACCTGCATCGACCTATAAAATTCCACACACGCTATTTGCTTTGGATGCCAAGCTGGTTAAAGATGAGTTTCA GACGTTCAAATGGGATGGGGTCAAAAGAAGTTTCACGCTGCACAATCAAGATCAGAACCTGCGCTCAGCCATGCGATACT CTGCAGTGTGGGTTTATGACGAATTTGCAAAACAACTTGGCGAACCAAAAGCCCAGCAATACTTGTCGCTAATTGATTAC GGTAATGCCGACTCGAGCTTTGATAAAGTAATCGAAGACAGTGACAGTTACTGGATTGATGGCAAGTTGACTATCTCAGC CACAGAACAAGTGGAATTTCTACAGGCTTTATATCGAAACGAATTACCTTTTGATTTAGCTGACCAGTTATTAGTTAAAG ATATTATGATTGTTGAAGCGGGTAAAGATTGGATTTTACGGGCGAAAACAGGCTGGCAAGGGCAATATGGCTGGTGGGTT GGTTGGGTAGAGTGGCCAGTAGGCCCAGTATTTTTTGCTTTAAATATCGATACACCAAATAGGATGAAAGATCTTTATAA ACGAGAGACCATCACACGGGAGATCTTACAGTCTATTGAGGCGCTACCTGCTAAGTAA
Upstream 100 bases:
>100_bases AGTGGTGGTGATGTCGATTGTCATGAGCGTTAAGTTGTTATCGGCGCAGTACGATCTATTTGCGTGGCTATAAATACTAT TTTTAAGGATGACCTTTTTG
Downstream 100 bases:
>100_bases TAACTAGCGGTCCTCAGTTAGTCGCTAGTCGCCAAAAGAGGTTTAATACTTCAGTTAAACAATCAATTCGCCAAGATACC CGATTTATGATTTCAGTTCC
Product: beta-lactamase
Products: NA
Alternate protein names: Penicillinase [H]
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MSVLKPSDIKTNNNTGYWARLFLPLAVFITTPFQVSAALEERSDWQQYFNHYDAKGTIVVRDERGPKAKLWVVDSERAQQ RFSPASTYKIPHTLFALDAKLVKDEFQTFKWDGVKRSFTLHNQDQNLRSAMRYSAVWVYDEFAKQLGEPKAQQYLSLIDY GNADSSFDKVIEDSDSYWIDGKLTISATEQVEFLQALYRNELPFDLADQLLVKDIMIVEAGKDWILRAKTGWQGQYGWWV GWVEWPVGPVFFALNIDTPNRMKDLYKRETITREILQSIEALPAK
Sequences:
>Translated_285_residues MSVLKPSDIKTNNNTGYWARLFLPLAVFITTPFQVSAALEERSDWQQYFNHYDAKGTIVVRDERGPKAKLWVVDSERAQQ RFSPASTYKIPHTLFALDAKLVKDEFQTFKWDGVKRSFTLHNQDQNLRSAMRYSAVWVYDEFAKQLGEPKAQQYLSLIDY GNADSSFDKVIEDSDSYWIDGKLTISATEQVEFLQALYRNELPFDLADQLLVKDIMIVEAGKDWILRAKTGWQGQYGWWV GWVEWPVGPVFFALNIDTPNRMKDLYKRETITREILQSIEALPAK >Mature_284_residues SVLKPSDIKTNNNTGYWARLFLPLAVFITTPFQVSAALEERSDWQQYFNHYDAKGTIVVRDERGPKAKLWVVDSERAQQR FSPASTYKIPHTLFALDAKLVKDEFQTFKWDGVKRSFTLHNQDQNLRSAMRYSAVWVYDEFAKQLGEPKAQQYLSLIDYG NADSSFDKVIEDSDSYWIDGKLTISATEQVEFLQALYRNELPFDLADQLLVKDIMIVEAGKDWILRAKTGWQGQYGWWVG WVEWPVGPVFFALNIDTPNRMKDLYKRETITREILQSIEALPAK
Specific function: This is an oxacillin-hydrolyzing beta-lactamase [H]
COG id: COG2602
COG function: function code V; Beta-lactamase class D
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-D beta-lactamase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR002137 - InterPro: IPR001460 [H]
Pfam domain/function: PF00905 Transpeptidase [H]
EC number: =3.5.2.6 [H]
Molecular weight: Translated: 33084; Mature: 32953
Theoretical pI: Translated: 5.47; Mature: 5.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVLKPSDIKTNNNTGYWARLFLPLAVFITTPFQVSAALEERSDWQQYFNHYDAKGTIVV CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE RDERGPKAKLWVVDSERAQQRFSPASTYKIPHTLFALDAKLVKDEFQTFKWDGVKRSFTL ECCCCCCEEEEEEECHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEE HNQDQNLRSAMRYSAVWVYDEFAKQLGEPKAQQYLSLIDYGNADSSFDKVIEDSDSYWID CCCCHHHHHHHHHHHEEHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEEC GKLTISATEQVEFLQALYRNELPFDLADQLLVKDIMIVEAGKDWILRAKTGWQGQYGWWV CEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEECCCCEEEEECCCCCCCCCEEE GWVEWPVGPVFFALNIDTPNRMKDLYKRETITREILQSIEALPAK EEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SVLKPSDIKTNNNTGYWARLFLPLAVFITTPFQVSAALEERSDWQQYFNHYDAKGTIVV CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE RDERGPKAKLWVVDSERAQQRFSPASTYKIPHTLFALDAKLVKDEFQTFKWDGVKRSFTL ECCCCCCEEEEEEECHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEE HNQDQNLRSAMRYSAVWVYDEFAKQLGEPKAQQYLSLIDYGNADSSFDKVIEDSDSYWID CCCCHHHHHHHHHHHEEHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEEC GKLTISATEQVEFLQALYRNELPFDLADQLLVKDIMIVEAGKDWILRAKTGWQGQYGWWV CEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEECCCCEEEEECCCCCCCCCEEE GWVEWPVGPVFFALNIDTPNRMKDLYKRETITREILQSIEALPAK EEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9687410 [H]