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The map label for this gene is yebA [H]

Identifier: 167624620

GI number: 167624620

Start: 3276380

End: 3277636

Strand: Reverse

Name: yebA [H]

Synonym: Shal_2702

Alternate gene names: 167624620

Gene position: 3277636-3276380 (Counterclockwise)

Preceding gene: 167624621

Following gene: 167624612

Centisome position: 62.71

GC content: 45.66

Gene sequence:

>1257_bases
ATGTCTAAAAACCGTTTCGCGGGGCTATCTTCTTTACATCGAAAAGTCCTTTTAGGTTCGGTGTTGGTTATTGGCGCTGT
CATGTTAATGCCAAGCCAGCATGAGCTAATGCCACAGCGGATCCCGGTTCAGCTCGATATTGAGTCTATTCTTTCTCAAA
GCGTGACTCTTCCCCGCAGTCAATTGTTAGAGCCTGCGCCGGCGTTTCAAAAAGAGATAGTCAAAGGCGATACCTTAAGT
GGTTTGTTTGAGCAGGGCGGCGTGGATCAACAAACCATGTACCGTGTATTAGAAGCTGACTTAAATGTGTTGGCGTTAGA
TACCTTAAAGCCTGGCAATAAAATCCAGTTTTGGTTAAATGATGCTGGTGAGCTGCAAAAACTCAGTCTCTATTTTAATG
CCGCGAGACAGGTGATTTTTACGCGTTTCGATGATGGTTCATTTAACGTTGACGAAATTAACATCGAAGGTATTTGGCGC
GATCGCGCCATCTCTGGTCAGATCCATGGCTCTTTTTATGTTTCAGCCAAAAAGATGGGACTCAATGCCGCAGAGATCCA
GCGTGTTGAGTCGTTACTGAAAGAGAAACTCAACTTTGCCCGCGATCTTCGCGCGGGTGACAAATTTTCGGTATTGATGA
ACGATCAGTTTATCGATGGCGAAGCCACGGGTAATAGCCATGTGCTGGGCGTGACCATCGATAGAGGTTCTAGCAGTATT
AATGCTTATCAGCATACTGACGGTAACTTTTATGATGAGAAAGGGCAGAGCTTAGCGCGCGCATTTCAGCGCATTCCACT
GGCTAAAAATTACCGAATTAGCTCTCGATTCAATCCTAATCGCCATCATCCTGTAACTGGACGAAATTCGCCTCACAACG
GGACTGACTTTGCTATTCCTATTGGCACTAAAATTGTCGCACCTGGTGATGGTATCGTGTCTTTGGTTACCGATCATCGA
TTTGCAGGTAAGTACATCGTAATTGACCACGGTAACAAGTATCGCACTCGTTATTTGCACTTGTCGAAAGCACTCGTGCA
TAAGGGGCAGCGTGTCTCTCGTGGTCAAGTGATTGCGCTGTCGGGCAATACAGGTCGAGTGACTGGCCCACATCTGCATT
ATGAATTTCATATCAATGGTCGCCCAGTTGATGCCATGAAAGCCAAAATACCGATGGCGAGTAAGCTCTCTTCTAAAGAG
ATGAGCGAGTTTAGCCAGATTGTTAAGGTAAGAAAGATGATGATGGGCATAGCTTAA

Upstream 100 bases:

>100_bases
CGTCAAACCTCGTATTGAAGGGGTTTTTTGGTCAAATAGATAATCATAATAATGAAAGTTGAGGCACAGGTTGCGCGCAC
GTAAATTTTCTTTTTCAAAT

Downstream 100 bases:

>100_bases
GCGCAATTGGTATCAGGTTAAACTCATCAGAGTAAGTTTCTAAAAGTGAGTTTCTAAAACTGAAAGTATAAAAGCCATCT
TAGGATGGCTTTTATACTTA

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 417

Protein sequence:

>418_residues
MSKNRFAGLSSLHRKVLLGSVLVIGAVMLMPSQHELMPQRIPVQLDIESILSQSVTLPRSQLLEPAPAFQKEIVKGDTLS
GLFEQGGVDQQTMYRVLEADLNVLALDTLKPGNKIQFWLNDAGELQKLSLYFNAARQVIFTRFDDGSFNVDEINIEGIWR
DRAISGQIHGSFYVSAKKMGLNAAEIQRVESLLKEKLNFARDLRAGDKFSVLMNDQFIDGEATGNSHVLGVTIDRGSSSI
NAYQHTDGNFYDEKGQSLARAFQRIPLAKNYRISSRFNPNRHHPVTGRNSPHNGTDFAIPIGTKIVAPGDGIVSLVTDHR
FAGKYIVIDHGNKYRTRYLHLSKALVHKGQRVSRGQVIALSGNTGRVTGPHLHYEFHINGRPVDAMKAKIPMASKLSSKE
MSEFSQIVKVRKMMMGIA

Sequences:

>Translated_418_residues
MSKNRFAGLSSLHRKVLLGSVLVIGAVMLMPSQHELMPQRIPVQLDIESILSQSVTLPRSQLLEPAPAFQKEIVKGDTLS
GLFEQGGVDQQTMYRVLEADLNVLALDTLKPGNKIQFWLNDAGELQKLSLYFNAARQVIFTRFDDGSFNVDEINIEGIWR
DRAISGQIHGSFYVSAKKMGLNAAEIQRVESLLKEKLNFARDLRAGDKFSVLMNDQFIDGEATGNSHVLGVTIDRGSSSI
NAYQHTDGNFYDEKGQSLARAFQRIPLAKNYRISSRFNPNRHHPVTGRNSPHNGTDFAIPIGTKIVAPGDGIVSLVTDHR
FAGKYIVIDHGNKYRTRYLHLSKALVHKGQRVSRGQVIALSGNTGRVTGPHLHYEFHINGRPVDAMKAKIPMASKLSSKE
MSEFSQIVKVRKMMMGIA
>Mature_417_residues
SKNRFAGLSSLHRKVLLGSVLVIGAVMLMPSQHELMPQRIPVQLDIESILSQSVTLPRSQLLEPAPAFQKEIVKGDTLSG
LFEQGGVDQQTMYRVLEADLNVLALDTLKPGNKIQFWLNDAGELQKLSLYFNAARQVIFTRFDDGSFNVDEINIEGIWRD
RAISGQIHGSFYVSAKKMGLNAAEIQRVESLLKEKLNFARDLRAGDKFSVLMNDQFIDGEATGNSHVLGVTIDRGSSSIN
AYQHTDGNFYDEKGQSLARAFQRIPLAKNYRISSRFNPNRHHPVTGRNSPHNGTDFAIPIGTKIVAPGDGIVSLVTDHRF
AGKYIVIDHGNKYRTRYLHLSKALVHKGQRVSRGQVIALSGNTGRVTGPHLHYEFHINGRPVDAMKAKIPMASKLSSKEM
SEFSQIVKVRKMMMGIA

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=332, Percent_Identity=40.9638554216867, Blast_Score=252, Evalue=3e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 46476; Mature: 46345

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNRFAGLSSLHRKVLLGSVLVIGAVMLMPSQHELMPQRIPVQLDIESILSQSVTLPRS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEEHHHHHHHHCCCCHH
QLLEPAPAFQKEIVKGDTLSGLFEQGGVDQQTMYRVLEADLNVLALDTLKPGNKIQFWLN
HHCCCCCHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCEEEEEEC
DAGELQKLSLYFNAARQVIFTRFDDGSFNVDEINIEGIWRDRAISGQIHGSFYVSAKKMG
CCCCHHHHHHHHHHHCEEEEEEECCCCCCEEEEEEEEEEECCCCCCEECCEEEEEEHHHC
LNAAEIQRVESLLKEKLNFARDLRAGDKFSVLMNDQFIDGEATGNSHVLGVTIDRGSSSI
CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEECCCCCCCCEEEEEEEECCCCCC
NAYQHTDGNFYDEKGQSLARAFQRIPLAKNYRISSRFNPNRHHPVTGRNSPHNGTDFAIP
CEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEE
IGTKIVAPGDGIVSLVTDHRFAGKYIVIDHGNKYRTRYLHLSKALVHKGQRVSRGQVIAL
CCCEEEECCCCEEEEEECCCCCCEEEEEECCCCEEHHHHHHHHHHHHCCCCCCCCEEEEE
SGNTGRVTGPHLHYEFHINGRPVDAMKAKIPMASKLSSKEMSEFSQIVKVRKMMMGIA
ECCCCCEECCEEEEEEEECCCCCHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKNRFAGLSSLHRKVLLGSVLVIGAVMLMPSQHELMPQRIPVQLDIESILSQSVTLPRS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEEHHHHHHHHCCCCHH
QLLEPAPAFQKEIVKGDTLSGLFEQGGVDQQTMYRVLEADLNVLALDTLKPGNKIQFWLN
HHCCCCCHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCEEEEEEC
DAGELQKLSLYFNAARQVIFTRFDDGSFNVDEINIEGIWRDRAISGQIHGSFYVSAKKMG
CCCCHHHHHHHHHHHCEEEEEEECCCCCCEEEEEEEEEEECCCCCCEECCEEEEEEHHHC
LNAAEIQRVESLLKEKLNFARDLRAGDKFSVLMNDQFIDGEATGNSHVLGVTIDRGSSSI
CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEECCCCCCCCEEEEEEEECCCCCC
NAYQHTDGNFYDEKGQSLARAFQRIPLAKNYRISSRFNPNRHHPVTGRNSPHNGTDFAIP
CEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEE
IGTKIVAPGDGIVSLVTDHRFAGKYIVIDHGNKYRTRYLHLSKALVHKGQRVSRGQVIAL
CCCEEEECCCCEEEEEECCCCCCEEEEEECCCCEEHHHHHHHHHHHHCCCCCCCCEEEEE
SGNTGRVTGPHLHYEFHINGRPVDAMKAKIPMASKLSSKEMSEFSQIVKVRKMMMGIA
ECCCCCEECCEEEEEEEECCCCCHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]