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The map label for this gene is rssA [H]

Identifier: 167624612

GI number: 167624612

Start: 3267299

End: 3268276

Strand: Reverse

Name: rssA [H]

Synonym: Shal_2694

Alternate gene names: 167624612

Gene position: 3268276-3267299 (Counterclockwise)

Preceding gene: 167624620

Following gene: 167624611

Centisome position: 62.53

GC content: 49.39

Gene sequence:

>978_bases
GTGTCTACAAATAAAAAATCAGTACGAATAGGTTTAGCATTAGGTAGCGGAGCCGCAAAAGGTTGGGCGCATATTGGTGT
ACTAAATGGCCTTGCTAAAATGGGGATCTATCCCGATAAAATTGCAGGTTGTTCAATTGGTGCGTTAGTCGGTGCGGCTT
ACGCCAATGATCACTTAGAAGAGCTTGAGAGTTGGGTGCGCAGTTTTAGCAGCTGGGATGTACTTGGGCTGATGGATCTC
AGTTGGGGCCGAGGCGGTCTTATTGGTGGTGAGCGAGTATTTGATGTGCTGCAGCAGCGTATTGGTGATCTGCAGATAGA
AGACCTGAAAAAGCCGTTTGCTGCAGTTGCGACCGATCTGTATTCCGGCCAAGAAATTTGGTTTAAGGAAGGGGATTTAC
GCCACGCTGTACGGGCATCTTGCTCTATGCCGGGTATTTTGCCACCCGTTAAGGTAGGCGAGCGTTGGTTGGTTGATGGT
GCAGTCGTTAACCCTGTTCCCGTTTCGGTTAGCCGCGCCATGGGCGTAGACCTCGTGATTGCGGTCGATCTGCATGGGCT
TCGTCGTGGTCGTATGCAAGTTTTACCCGTGAATATGAAAAGTAACAAGCCAACACCCGAAGAAGTGCATGAGGCTGAGA
AGCATAAAGATAAAGGCTTTACCGATCTGTTAGCTCGAGGCAGGGGTTACATTACGGGTTTAACTGATAAGTTCTCCCTT
GGTGGTAAGAGCAATGCACCGCATAACCCTAATCCGGGGATGCTAGCGGTCATGCATCAATCGATGGAAATTTTGGAAGG
GCGCCATAAGCGAGCGCGTTTGATGGGCGATCCGCCTGATATCTGTATCGTGCCGGATATAGGGAATATAGGAACTATGG
AGTTTCATCGTGCTGAAGAAGCGATTGCGGCTGGTGAAGCTGCGGTTGAGAAAGTAGCGCACTTGATTGAAGCGGCTCTG
ATACAGCATGAAGTCTAA

Upstream 100 bases:

>100_bases
TTTCATTAGCGCCGAGCGTGACTTAGAAATTGATAAAAGGCGCTTTGGCATTGAGTGTTAAAGAGTCTACTTTAAAGCTG
ACCTATGGAGTCATTTTAGC

Downstream 100 bases:

>100_bases
ACGGTTTTGTGTGTTTGGTTTTTGAATAAAGAGGCGCTAATCGCGCCTTTTTTGTGACCTTTTTCTGGTTTTATATATGC
CTAAATACCGTGTTTTACTG

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MSTNKKSVRIGLALGSGAAKGWAHIGVLNGLAKMGIYPDKIAGCSIGALVGAAYANDHLEELESWVRSFSSWDVLGLMDL
SWGRGGLIGGERVFDVLQQRIGDLQIEDLKKPFAAVATDLYSGQEIWFKEGDLRHAVRASCSMPGILPPVKVGERWLVDG
AVVNPVPVSVSRAMGVDLVIAVDLHGLRRGRMQVLPVNMKSNKPTPEEVHEAEKHKDKGFTDLLARGRGYITGLTDKFSL
GGKSNAPHNPNPGMLAVMHQSMEILEGRHKRARLMGDPPDICIVPDIGNIGTMEFHRAEEAIAAGEAAVEKVAHLIEAAL
IQHEV

Sequences:

>Translated_325_residues
MSTNKKSVRIGLALGSGAAKGWAHIGVLNGLAKMGIYPDKIAGCSIGALVGAAYANDHLEELESWVRSFSSWDVLGLMDL
SWGRGGLIGGERVFDVLQQRIGDLQIEDLKKPFAAVATDLYSGQEIWFKEGDLRHAVRASCSMPGILPPVKVGERWLVDG
AVVNPVPVSVSRAMGVDLVIAVDLHGLRRGRMQVLPVNMKSNKPTPEEVHEAEKHKDKGFTDLLARGRGYITGLTDKFSL
GGKSNAPHNPNPGMLAVMHQSMEILEGRHKRARLMGDPPDICIVPDIGNIGTMEFHRAEEAIAAGEAAVEKVAHLIEAAL
IQHEV
>Mature_324_residues
STNKKSVRIGLALGSGAAKGWAHIGVLNGLAKMGIYPDKIAGCSIGALVGAAYANDHLEELESWVRSFSSWDVLGLMDLS
WGRGGLIGGERVFDVLQQRIGDLQIEDLKKPFAAVATDLYSGQEIWFKEGDLRHAVRASCSMPGILPPVKVGERWLVDGA
VVNPVPVSVSRAMGVDLVIAVDLHGLRRGRMQVLPVNMKSNKPTPEEVHEAEKHKDKGFTDLLARGRGYITGLTDKFSLG
GKSNAPHNPNPGMLAVMHQSMEILEGRHKRARLMGDPPDICIVPDIGNIGTMEFHRAEEAIAAGEAAVEKVAHLIEAALI
QHEV

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656043, Length=183, Percent_Identity=34.9726775956284, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI260656037, Length=183, Percent_Identity=34.9726775956284, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI260656041, Length=183, Percent_Identity=34.9726775956284, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI116256487, Length=183, Percent_Identity=34.9726775956284, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI260656039, Length=183, Percent_Identity=34.9726775956284, Blast_Score=101, Evalue=8e-22,
Organism=Homo sapiens, GI148727290, Length=183, Percent_Identity=35.5191256830601, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI148727335, Length=183, Percent_Identity=35.5191256830601, Blast_Score=98, Evalue=1e-20,
Organism=Escherichia coli, GI226510936, Length=310, Percent_Identity=49.3548387096774, Blast_Score=286, Evalue=1e-78,
Organism=Caenorhabditis elegans, GI193204778, Length=164, Percent_Identity=30.4878048780488, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71997299, Length=170, Percent_Identity=33.5294117647059, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71997289, Length=170, Percent_Identity=33.5294117647059, Blast_Score=72, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6323581, Length=181, Percent_Identity=33.7016574585635, Blast_Score=94, Evalue=2e-20,
Organism=Drosophila melanogaster, GI28571388, Length=183, Percent_Identity=33.879781420765, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI281376913, Length=182, Percent_Identity=32.967032967033, Blast_Score=89, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 35049; Mature: 34918

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTNKKSVRIGLALGSGAAKGWAHIGVLNGLAKMGIYPDKIAGCSIGALVGAAYANDHLE
CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHH
ELESWVRSFSSWDVLGLMDLSWGRGGLIGGERVFDVLQQRIGDLQIEDLKKPFAAVATDL
HHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
YSGQEIWFKEGDLRHAVRASCSMPGILPPVKVGERWLVDGAVVNPVPVSVSRAMGVDLVI
CCCCEEEEECCCHHHHHHHHCCCCCCCCCHHCCCEEEECCCEECCCCCCHHHHCCCEEEE
AVDLHGLRRGRMQVLPVNMKSNKPTPEEVHEAEKHKDKGFTDLLARGRGYITGLTDKFSL
EEEHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCEEEECCCCCCC
GGKSNAPHNPNPGMLAVMHQSMEILEGRHKRARLMGDPPDICIVPDIGNIGTMEFHRAEE
CCCCCCCCCCCCCEEHHHHHHHHHHHCHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHH
AIAAGEAAVEKVAHLIEAALIQHEV
HHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STNKKSVRIGLALGSGAAKGWAHIGVLNGLAKMGIYPDKIAGCSIGALVGAAYANDHLE
CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHH
ELESWVRSFSSWDVLGLMDLSWGRGGLIGGERVFDVLQQRIGDLQIEDLKKPFAAVATDL
HHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
YSGQEIWFKEGDLRHAVRASCSMPGILPPVKVGERWLVDGAVVNPVPVSVSRAMGVDLVI
CCCCEEEEECCCHHHHHHHHCCCCCCCCCHHCCCEEEECCCEECCCCCCHHHHCCCEEEE
AVDLHGLRRGRMQVLPVNMKSNKPTPEEVHEAEKHKDKGFTDLLARGRGYITGLTDKFSL
EEEHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCEEEECCCCCCC
GGKSNAPHNPNPGMLAVMHQSMEILEGRHKRARLMGDPPDICIVPDIGNIGTMEFHRAEE
CCCCCCCCCCCCCEEHHHHHHHHHHHCHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHH
AIAAGEAAVEKVAHLIEAALIQHEV
HHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8282700; 9097039; 8905232; 9278503 [H]