| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624554
Identifier: 167624554
GI number: 167624554
Start: 3192483
End: 3194543
Strand: Reverse
Name: 167624554
Synonym: Shal_2634
Alternate gene names: NA
Gene position: 3194543-3192483 (Counterclockwise)
Preceding gene: 167624555
Following gene: 167624551
Centisome position: 61.12
GC content: 47.26
Gene sequence:
>2061_bases ATGAAAAAACTGTTTGCCACCTCTACCTGTGCCATCGCCATATTGTCTGCCTGTTCTAACGCCTCTCAAGTCGTAAATAA TCCTGAATCTGATGCACTCGCAATAGAAAACAAACAATATTTAAATGGCTTAGCCGATAGGCTGACAGACCGTTGGCAGT TAACCGCTAATGGTCTGGTATGGGATGTGAGTGATAGCCATGAAGATCATATTGAGATGAGTGGCGAGCAAATCTCGGCC ATTATCTATTATGGCAGTGATAGCAATGGGAATTTGAGCTTAACGCGAAAGCTGGTGTGGCCGATGCTGCGCACCATTCC TAATGATACTCATGCCAGCCTTATTCATGATTTTCCGTTGAGCCAGTCTCCTAGCATTAGCCTTAATGGCGAGCTAGTGA GTCAAGAGCGGCTACAGCAGGCTCGCATAGATGGTAGGTTGACTCTTGTGAGCCAAATTGGTGAAGGTGTTGAGCTCACT CGAACCGTATCTGTGAGCACCACACAGCCCGTGGTGATTGAGGCGCTGAGCTTTAAAAATACTGGTAACGCTGCACAAAT ACTGCAACTTGGTGAGCTTGATTACCACATCGATACGGCAAAAGAGCAAGGGGTATACGGCAGTTATCTTATAGAAGCGA CTAGCGATAAAGCGGGGACATTTGAATTAGAACCGAATGATAGTGTAACTGTTTACCTAGAGTTCAAAGCCACCAAAACG GGGCAAAACCGTGAGTTTGATGCTGTAAAAGAGCTGGAATTACGTCAACAGTACGTAGCGGGTTTGAATAATAATCTGCA GCTGATTACGCCTGATGAGAACATCAACAAGATGTTTGAGTTCGCCAAGCTTCGAAGCGCAGAGTCCATTTTTAGAACGA AGGGCGGCTTGATGCATGCGCCAGGAGGTGGGCGTTATTACGCGGCTATTTGGGCTAATGATCAGGCGGAATATATCAAT CCATTCTTCCCATTTTTAGGTAATGATGTCGGTAATGAGTCAGCCATTAATAGCTTTGAGCACTTTGCTCGCTTTATGAA TGAGGAGGGTAAGGCGATTCCATCTTCGATTATTGCCGAAGGGGATGATATTTGGAACGGTGCCGGCGATAGGGGCGACT GCGCCATGATCGCCTACGGTGCAAGCCGATTTGCACTGGCCTATGGCGATGAAGATCAGGCTAAAGCACTGCTGCCGCTG ATCGATTGGTGTATCGATTTTAGTTACGCTAAGCAAACTGATGAGGGCGTTATTGCATCGGACAGCGATGAATTGGAGGG GCGTTTTCCAGCAGGAGACGTCAACTTAAGTACCAACATGCTGACCTATGGCGCTTTGGTTTCATCTAGTCATTTGAATA ACGAGCTTGGTCGAACTGCTATTGCAGTAGAATATCAACAGCGTGCAACCAAGTTAGCAATAGATATCGAAAGTTACTTT GGCGCCAGTGTGCAAGGCTTTGATACCTACCAATACTATCAGGGCAACGACAAGTTACGAGCCTGGATTGCGCTGCCATT CTCTTTTGGAATTTTTGACCGTAAAGATCAAACCTTAGCGGCTGTATTATCTGATCAACTGTGGAGTGTAGATGGGATCT ATAGCGAAGCGGGCAATAAGACCTTTTGGGATAGGGCGACACTTTATGCCTTTAGAGGCATTTTTGCAGCTCAAGAGACC GACACCGCGATGCGCTACTTTAAGTATTATTCACGTAAGCGTTTGCTCGGTGAGCATGTGCCTTACGCGGTAGAGGCATG GCCTGAAGGCGATCAGCGCCACCTATCAGCAGAGAGTGCGCTCTATGCTCGGGTAGTCACTGAAGGCATTTTCGGTATCG AACCGACAGGCTTCAAACGTTTCGACATCGCCCCTTATCTGCCGGCGACTTGGGACAATATGTGCTTAAAGCATATTCGT GCCTTCGAGAGTAATTTCGATGTTTGTGTGAGCCGCGTGGAAGGTACTGAGCAAGGTTTCAATGTCACCATAGAGCAGGA GCAGGGCGATCTGCAGCAGTTTAGCTGGGACGGGCTGTCTCCTATTAGTATCAGCCTATAA
Upstream 100 bases:
>100_bases TTTCAATAACTTCTTTATTAGTTTTAATAGCCTGCATCGGCCAGTCAGGATTATTAGCTAAAAAGCTGACTGGAATAACG CGAAATATAACGAGAGCTTT
Downstream 100 bases:
>100_bases GGCTAGGTAACCAAAGCAGGTTAAGTGGTATCGACTTAACCTGCTTTTTTATGATTTTGATAGTATTTGATGGTAAATAG TAGATCTGCTTACTCAAGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 686; Mature: 686
Protein sequence:
>686_residues MKKLFATSTCAIAILSACSNASQVVNNPESDALAIENKQYLNGLADRLTDRWQLTANGLVWDVSDSHEDHIEMSGEQISA IIYYGSDSNGNLSLTRKLVWPMLRTIPNDTHASLIHDFPLSQSPSISLNGELVSQERLQQARIDGRLTLVSQIGEGVELT RTVSVSTTQPVVIEALSFKNTGNAAQILQLGELDYHIDTAKEQGVYGSYLIEATSDKAGTFELEPNDSVTVYLEFKATKT GQNREFDAVKELELRQQYVAGLNNNLQLITPDENINKMFEFAKLRSAESIFRTKGGLMHAPGGGRYYAAIWANDQAEYIN PFFPFLGNDVGNESAINSFEHFARFMNEEGKAIPSSIIAEGDDIWNGAGDRGDCAMIAYGASRFALAYGDEDQAKALLPL IDWCIDFSYAKQTDEGVIASDSDELEGRFPAGDVNLSTNMLTYGALVSSSHLNNELGRTAIAVEYQQRATKLAIDIESYF GASVQGFDTYQYYQGNDKLRAWIALPFSFGIFDRKDQTLAAVLSDQLWSVDGIYSEAGNKTFWDRATLYAFRGIFAAQET DTAMRYFKYYSRKRLLGEHVPYAVEAWPEGDQRHLSAESALYARVVTEGIFGIEPTGFKRFDIAPYLPATWDNMCLKHIR AFESNFDVCVSRVEGTEQGFNVTIEQEQGDLQQFSWDGLSPISISL
Sequences:
>Translated_686_residues MKKLFATSTCAIAILSACSNASQVVNNPESDALAIENKQYLNGLADRLTDRWQLTANGLVWDVSDSHEDHIEMSGEQISA IIYYGSDSNGNLSLTRKLVWPMLRTIPNDTHASLIHDFPLSQSPSISLNGELVSQERLQQARIDGRLTLVSQIGEGVELT RTVSVSTTQPVVIEALSFKNTGNAAQILQLGELDYHIDTAKEQGVYGSYLIEATSDKAGTFELEPNDSVTVYLEFKATKT GQNREFDAVKELELRQQYVAGLNNNLQLITPDENINKMFEFAKLRSAESIFRTKGGLMHAPGGGRYYAAIWANDQAEYIN PFFPFLGNDVGNESAINSFEHFARFMNEEGKAIPSSIIAEGDDIWNGAGDRGDCAMIAYGASRFALAYGDEDQAKALLPL IDWCIDFSYAKQTDEGVIASDSDELEGRFPAGDVNLSTNMLTYGALVSSSHLNNELGRTAIAVEYQQRATKLAIDIESYF GASVQGFDTYQYYQGNDKLRAWIALPFSFGIFDRKDQTLAAVLSDQLWSVDGIYSEAGNKTFWDRATLYAFRGIFAAQET DTAMRYFKYYSRKRLLGEHVPYAVEAWPEGDQRHLSAESALYARVVTEGIFGIEPTGFKRFDIAPYLPATWDNMCLKHIR AFESNFDVCVSRVEGTEQGFNVTIEQEQGDLQQFSWDGLSPISISL >Mature_686_residues MKKLFATSTCAIAILSACSNASQVVNNPESDALAIENKQYLNGLADRLTDRWQLTANGLVWDVSDSHEDHIEMSGEQISA IIYYGSDSNGNLSLTRKLVWPMLRTIPNDTHASLIHDFPLSQSPSISLNGELVSQERLQQARIDGRLTLVSQIGEGVELT RTVSVSTTQPVVIEALSFKNTGNAAQILQLGELDYHIDTAKEQGVYGSYLIEATSDKAGTFELEPNDSVTVYLEFKATKT GQNREFDAVKELELRQQYVAGLNNNLQLITPDENINKMFEFAKLRSAESIFRTKGGLMHAPGGGRYYAAIWANDQAEYIN PFFPFLGNDVGNESAINSFEHFARFMNEEGKAIPSSIIAEGDDIWNGAGDRGDCAMIAYGASRFALAYGDEDQAKALLPL IDWCIDFSYAKQTDEGVIASDSDELEGRFPAGDVNLSTNMLTYGALVSSSHLNNELGRTAIAVEYQQRATKLAIDIESYF GASVQGFDTYQYYQGNDKLRAWIALPFSFGIFDRKDQTLAAVLSDQLWSVDGIYSEAGNKTFWDRATLYAFRGIFAAQET DTAMRYFKYYSRKRLLGEHVPYAVEAWPEGDQRHLSAESALYARVVTEGIFGIEPTGFKRFDIAPYLPATWDNMCLKHIR AFESNFDVCVSRVEGTEQGFNVTIEQEQGDLQQFSWDGLSPISISL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 76218; Mature: 76218
Theoretical pI: Translated: 4.40; Mature: 4.40
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLFATSTCAIAILSACSNASQVVNNPESDALAIENKQYLNGLADRLTDRWQLTANGLV CCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCEEEECCHHHHHHHHHHCCCCEEEEECCEE WDVSDSHEDHIEMSGEQISAIIYYGSDSNGNLSLTRKLVWPMLRTIPNDTHASLIHDFPL EECCCCCCCHHEECCCEEEEEEEEECCCCCCEEHHHHHHHHHHHHCCCCCHHHHHCCCCC SQSPSISLNGELVSQERLQQARIDGRLTLVSQIGEGVELTRTVSVSTTQPVVIEALSFKN CCCCCEEECCCHHHHHHHHHHHCCCEEEEHHHCCCCEEEEEEEEECCCCCEEEEEEECCC TGNAAQILQLGELDYHIDTAKEQGVYGSYLIEATSDKAGTFELEPNDSVTVYLEFKATKT CCCHHHHEEECCCCEEEECHHHCCCCEEEEEEECCCCCCEEEECCCCCEEEEEEEEEECC GQNREFDAVKELELRQQYVAGLNNNLQLITPDENINKMFEFAKLRSAESIFRTKGGLMHA CCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEC PGGGRYYAAIWANDQAEYINPFFPFLGNDVGNESAINSFEHFARFMNEEGKAIPSSIIAE CCCCEEEEEEEECCCHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCC GDDIWNGAGDRGDCAMIAYGASRFALAYGDEDQAKALLPLIDWCIDFSYAKQTDEGVIAS CCHHCCCCCCCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHCCHHHCCCCCCCEEC DSDELEGRFPAGDVNLSTNMLTYGALVSSSHLNNELGRTAIAVEYQQRATKLAIDIESYF CCHHCCCCCCCCCCCCCCCCEEHHHHHHHHHCCHHHCCEEEEEEHHHCCEEEEEEEHHHC GASVQGFDTYQYYQGNDKLRAWIALPFSFGIFDRKDQTLAAVLSDQLWSVDGIYSEAGNK CCCCCCCEEEEEECCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHCCCC TFWDRATLYAFRGIFAAQETDTAMRYFKYYSRKRLLGEHVPYAVEAWPEGDQRHLSAESA CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCHHHH LYARVVTEGIFGIEPTGFKRFDIAPYLPATWDNMCLKHIRAFESNFDVCVSRVEGTEQGF HHHHHHHHCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCC NVTIEQEQGDLQQFSWDGLSPISISL EEEEECCCCCHHHCCCCCCCCEEEEC >Mature Secondary Structure MKKLFATSTCAIAILSACSNASQVVNNPESDALAIENKQYLNGLADRLTDRWQLTANGLV CCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCEEEECCHHHHHHHHHHCCCCEEEEECCEE WDVSDSHEDHIEMSGEQISAIIYYGSDSNGNLSLTRKLVWPMLRTIPNDTHASLIHDFPL EECCCCCCCHHEECCCEEEEEEEEECCCCCCEEHHHHHHHHHHHHCCCCCHHHHHCCCCC SQSPSISLNGELVSQERLQQARIDGRLTLVSQIGEGVELTRTVSVSTTQPVVIEALSFKN CCCCCEEECCCHHHHHHHHHHHCCCEEEEHHHCCCCEEEEEEEEECCCCCEEEEEEECCC TGNAAQILQLGELDYHIDTAKEQGVYGSYLIEATSDKAGTFELEPNDSVTVYLEFKATKT CCCHHHHEEECCCCEEEECHHHCCCCEEEEEEECCCCCCEEEECCCCCEEEEEEEEEECC GQNREFDAVKELELRQQYVAGLNNNLQLITPDENINKMFEFAKLRSAESIFRTKGGLMHA CCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEC PGGGRYYAAIWANDQAEYINPFFPFLGNDVGNESAINSFEHFARFMNEEGKAIPSSIIAE CCCCEEEEEEEECCCHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCC GDDIWNGAGDRGDCAMIAYGASRFALAYGDEDQAKALLPLIDWCIDFSYAKQTDEGVIAS CCHHCCCCCCCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHCCHHHCCCCCCCEEC DSDELEGRFPAGDVNLSTNMLTYGALVSSSHLNNELGRTAIAVEYQQRATKLAIDIESYF CCHHCCCCCCCCCCCCCCCCEEHHHHHHHHHCCHHHCCEEEEEEHHHCCEEEEEEEHHHC GASVQGFDTYQYYQGNDKLRAWIALPFSFGIFDRKDQTLAAVLSDQLWSVDGIYSEAGNK CCCCCCCEEEEEECCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHCCCC TFWDRATLYAFRGIFAAQETDTAMRYFKYYSRKRLLGEHVPYAVEAWPEGDQRHLSAESA CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCHHHH LYARVVTEGIFGIEPTGFKRFDIAPYLPATWDNMCLKHIRAFESNFDVCVSRVEGTEQGF HHHHHHHHCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCC NVTIEQEQGDLQQFSWDGLSPISISL EEEEECCCCCHHHCCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA