Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

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The map label for this gene is 167624554

Identifier: 167624554

GI number: 167624554

Start: 3192483

End: 3194543

Strand: Reverse

Name: 167624554

Synonym: Shal_2634

Alternate gene names: NA

Gene position: 3194543-3192483 (Counterclockwise)

Preceding gene: 167624555

Following gene: 167624551

Centisome position: 61.12

GC content: 47.26

Gene sequence:

>2061_bases
ATGAAAAAACTGTTTGCCACCTCTACCTGTGCCATCGCCATATTGTCTGCCTGTTCTAACGCCTCTCAAGTCGTAAATAA
TCCTGAATCTGATGCACTCGCAATAGAAAACAAACAATATTTAAATGGCTTAGCCGATAGGCTGACAGACCGTTGGCAGT
TAACCGCTAATGGTCTGGTATGGGATGTGAGTGATAGCCATGAAGATCATATTGAGATGAGTGGCGAGCAAATCTCGGCC
ATTATCTATTATGGCAGTGATAGCAATGGGAATTTGAGCTTAACGCGAAAGCTGGTGTGGCCGATGCTGCGCACCATTCC
TAATGATACTCATGCCAGCCTTATTCATGATTTTCCGTTGAGCCAGTCTCCTAGCATTAGCCTTAATGGCGAGCTAGTGA
GTCAAGAGCGGCTACAGCAGGCTCGCATAGATGGTAGGTTGACTCTTGTGAGCCAAATTGGTGAAGGTGTTGAGCTCACT
CGAACCGTATCTGTGAGCACCACACAGCCCGTGGTGATTGAGGCGCTGAGCTTTAAAAATACTGGTAACGCTGCACAAAT
ACTGCAACTTGGTGAGCTTGATTACCACATCGATACGGCAAAAGAGCAAGGGGTATACGGCAGTTATCTTATAGAAGCGA
CTAGCGATAAAGCGGGGACATTTGAATTAGAACCGAATGATAGTGTAACTGTTTACCTAGAGTTCAAAGCCACCAAAACG
GGGCAAAACCGTGAGTTTGATGCTGTAAAAGAGCTGGAATTACGTCAACAGTACGTAGCGGGTTTGAATAATAATCTGCA
GCTGATTACGCCTGATGAGAACATCAACAAGATGTTTGAGTTCGCCAAGCTTCGAAGCGCAGAGTCCATTTTTAGAACGA
AGGGCGGCTTGATGCATGCGCCAGGAGGTGGGCGTTATTACGCGGCTATTTGGGCTAATGATCAGGCGGAATATATCAAT
CCATTCTTCCCATTTTTAGGTAATGATGTCGGTAATGAGTCAGCCATTAATAGCTTTGAGCACTTTGCTCGCTTTATGAA
TGAGGAGGGTAAGGCGATTCCATCTTCGATTATTGCCGAAGGGGATGATATTTGGAACGGTGCCGGCGATAGGGGCGACT
GCGCCATGATCGCCTACGGTGCAAGCCGATTTGCACTGGCCTATGGCGATGAAGATCAGGCTAAAGCACTGCTGCCGCTG
ATCGATTGGTGTATCGATTTTAGTTACGCTAAGCAAACTGATGAGGGCGTTATTGCATCGGACAGCGATGAATTGGAGGG
GCGTTTTCCAGCAGGAGACGTCAACTTAAGTACCAACATGCTGACCTATGGCGCTTTGGTTTCATCTAGTCATTTGAATA
ACGAGCTTGGTCGAACTGCTATTGCAGTAGAATATCAACAGCGTGCAACCAAGTTAGCAATAGATATCGAAAGTTACTTT
GGCGCCAGTGTGCAAGGCTTTGATACCTACCAATACTATCAGGGCAACGACAAGTTACGAGCCTGGATTGCGCTGCCATT
CTCTTTTGGAATTTTTGACCGTAAAGATCAAACCTTAGCGGCTGTATTATCTGATCAACTGTGGAGTGTAGATGGGATCT
ATAGCGAAGCGGGCAATAAGACCTTTTGGGATAGGGCGACACTTTATGCCTTTAGAGGCATTTTTGCAGCTCAAGAGACC
GACACCGCGATGCGCTACTTTAAGTATTATTCACGTAAGCGTTTGCTCGGTGAGCATGTGCCTTACGCGGTAGAGGCATG
GCCTGAAGGCGATCAGCGCCACCTATCAGCAGAGAGTGCGCTCTATGCTCGGGTAGTCACTGAAGGCATTTTCGGTATCG
AACCGACAGGCTTCAAACGTTTCGACATCGCCCCTTATCTGCCGGCGACTTGGGACAATATGTGCTTAAAGCATATTCGT
GCCTTCGAGAGTAATTTCGATGTTTGTGTGAGCCGCGTGGAAGGTACTGAGCAAGGTTTCAATGTCACCATAGAGCAGGA
GCAGGGCGATCTGCAGCAGTTTAGCTGGGACGGGCTGTCTCCTATTAGTATCAGCCTATAA

Upstream 100 bases:

>100_bases
TTTCAATAACTTCTTTATTAGTTTTAATAGCCTGCATCGGCCAGTCAGGATTATTAGCTAAAAAGCTGACTGGAATAACG
CGAAATATAACGAGAGCTTT

Downstream 100 bases:

>100_bases
GGCTAGGTAACCAAAGCAGGTTAAGTGGTATCGACTTAACCTGCTTTTTTATGATTTTGATAGTATTTGATGGTAAATAG
TAGATCTGCTTACTCAAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 686; Mature: 686

Protein sequence:

>686_residues
MKKLFATSTCAIAILSACSNASQVVNNPESDALAIENKQYLNGLADRLTDRWQLTANGLVWDVSDSHEDHIEMSGEQISA
IIYYGSDSNGNLSLTRKLVWPMLRTIPNDTHASLIHDFPLSQSPSISLNGELVSQERLQQARIDGRLTLVSQIGEGVELT
RTVSVSTTQPVVIEALSFKNTGNAAQILQLGELDYHIDTAKEQGVYGSYLIEATSDKAGTFELEPNDSVTVYLEFKATKT
GQNREFDAVKELELRQQYVAGLNNNLQLITPDENINKMFEFAKLRSAESIFRTKGGLMHAPGGGRYYAAIWANDQAEYIN
PFFPFLGNDVGNESAINSFEHFARFMNEEGKAIPSSIIAEGDDIWNGAGDRGDCAMIAYGASRFALAYGDEDQAKALLPL
IDWCIDFSYAKQTDEGVIASDSDELEGRFPAGDVNLSTNMLTYGALVSSSHLNNELGRTAIAVEYQQRATKLAIDIESYF
GASVQGFDTYQYYQGNDKLRAWIALPFSFGIFDRKDQTLAAVLSDQLWSVDGIYSEAGNKTFWDRATLYAFRGIFAAQET
DTAMRYFKYYSRKRLLGEHVPYAVEAWPEGDQRHLSAESALYARVVTEGIFGIEPTGFKRFDIAPYLPATWDNMCLKHIR
AFESNFDVCVSRVEGTEQGFNVTIEQEQGDLQQFSWDGLSPISISL

Sequences:

>Translated_686_residues
MKKLFATSTCAIAILSACSNASQVVNNPESDALAIENKQYLNGLADRLTDRWQLTANGLVWDVSDSHEDHIEMSGEQISA
IIYYGSDSNGNLSLTRKLVWPMLRTIPNDTHASLIHDFPLSQSPSISLNGELVSQERLQQARIDGRLTLVSQIGEGVELT
RTVSVSTTQPVVIEALSFKNTGNAAQILQLGELDYHIDTAKEQGVYGSYLIEATSDKAGTFELEPNDSVTVYLEFKATKT
GQNREFDAVKELELRQQYVAGLNNNLQLITPDENINKMFEFAKLRSAESIFRTKGGLMHAPGGGRYYAAIWANDQAEYIN
PFFPFLGNDVGNESAINSFEHFARFMNEEGKAIPSSIIAEGDDIWNGAGDRGDCAMIAYGASRFALAYGDEDQAKALLPL
IDWCIDFSYAKQTDEGVIASDSDELEGRFPAGDVNLSTNMLTYGALVSSSHLNNELGRTAIAVEYQQRATKLAIDIESYF
GASVQGFDTYQYYQGNDKLRAWIALPFSFGIFDRKDQTLAAVLSDQLWSVDGIYSEAGNKTFWDRATLYAFRGIFAAQET
DTAMRYFKYYSRKRLLGEHVPYAVEAWPEGDQRHLSAESALYARVVTEGIFGIEPTGFKRFDIAPYLPATWDNMCLKHIR
AFESNFDVCVSRVEGTEQGFNVTIEQEQGDLQQFSWDGLSPISISL
>Mature_686_residues
MKKLFATSTCAIAILSACSNASQVVNNPESDALAIENKQYLNGLADRLTDRWQLTANGLVWDVSDSHEDHIEMSGEQISA
IIYYGSDSNGNLSLTRKLVWPMLRTIPNDTHASLIHDFPLSQSPSISLNGELVSQERLQQARIDGRLTLVSQIGEGVELT
RTVSVSTTQPVVIEALSFKNTGNAAQILQLGELDYHIDTAKEQGVYGSYLIEATSDKAGTFELEPNDSVTVYLEFKATKT
GQNREFDAVKELELRQQYVAGLNNNLQLITPDENINKMFEFAKLRSAESIFRTKGGLMHAPGGGRYYAAIWANDQAEYIN
PFFPFLGNDVGNESAINSFEHFARFMNEEGKAIPSSIIAEGDDIWNGAGDRGDCAMIAYGASRFALAYGDEDQAKALLPL
IDWCIDFSYAKQTDEGVIASDSDELEGRFPAGDVNLSTNMLTYGALVSSSHLNNELGRTAIAVEYQQRATKLAIDIESYF
GASVQGFDTYQYYQGNDKLRAWIALPFSFGIFDRKDQTLAAVLSDQLWSVDGIYSEAGNKTFWDRATLYAFRGIFAAQET
DTAMRYFKYYSRKRLLGEHVPYAVEAWPEGDQRHLSAESALYARVVTEGIFGIEPTGFKRFDIAPYLPATWDNMCLKHIR
AFESNFDVCVSRVEGTEQGFNVTIEQEQGDLQQFSWDGLSPISISL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 76218; Mature: 76218

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLFATSTCAIAILSACSNASQVVNNPESDALAIENKQYLNGLADRLTDRWQLTANGLV
CCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCEEEECCHHHHHHHHHHCCCCEEEEECCEE
WDVSDSHEDHIEMSGEQISAIIYYGSDSNGNLSLTRKLVWPMLRTIPNDTHASLIHDFPL
EECCCCCCCHHEECCCEEEEEEEEECCCCCCEEHHHHHHHHHHHHCCCCCHHHHHCCCCC
SQSPSISLNGELVSQERLQQARIDGRLTLVSQIGEGVELTRTVSVSTTQPVVIEALSFKN
CCCCCEEECCCHHHHHHHHHHHCCCEEEEHHHCCCCEEEEEEEEECCCCCEEEEEEECCC
TGNAAQILQLGELDYHIDTAKEQGVYGSYLIEATSDKAGTFELEPNDSVTVYLEFKATKT
CCCHHHHEEECCCCEEEECHHHCCCCEEEEEEECCCCCCEEEECCCCCEEEEEEEEEECC
GQNREFDAVKELELRQQYVAGLNNNLQLITPDENINKMFEFAKLRSAESIFRTKGGLMHA
CCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEC
PGGGRYYAAIWANDQAEYINPFFPFLGNDVGNESAINSFEHFARFMNEEGKAIPSSIIAE
CCCCEEEEEEEECCCHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCC
GDDIWNGAGDRGDCAMIAYGASRFALAYGDEDQAKALLPLIDWCIDFSYAKQTDEGVIAS
CCHHCCCCCCCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHCCHHHCCCCCCCEEC
DSDELEGRFPAGDVNLSTNMLTYGALVSSSHLNNELGRTAIAVEYQQRATKLAIDIESYF
CCHHCCCCCCCCCCCCCCCCEEHHHHHHHHHCCHHHCCEEEEEEHHHCCEEEEEEEHHHC
GASVQGFDTYQYYQGNDKLRAWIALPFSFGIFDRKDQTLAAVLSDQLWSVDGIYSEAGNK
CCCCCCCEEEEEECCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHCCCC
TFWDRATLYAFRGIFAAQETDTAMRYFKYYSRKRLLGEHVPYAVEAWPEGDQRHLSAESA
CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCHHHH
LYARVVTEGIFGIEPTGFKRFDIAPYLPATWDNMCLKHIRAFESNFDVCVSRVEGTEQGF
HHHHHHHHCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCC
NVTIEQEQGDLQQFSWDGLSPISISL
EEEEECCCCCHHHCCCCCCCCEEEEC
>Mature Secondary Structure
MKKLFATSTCAIAILSACSNASQVVNNPESDALAIENKQYLNGLADRLTDRWQLTANGLV
CCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCEEEECCHHHHHHHHHHCCCCEEEEECCEE
WDVSDSHEDHIEMSGEQISAIIYYGSDSNGNLSLTRKLVWPMLRTIPNDTHASLIHDFPL
EECCCCCCCHHEECCCEEEEEEEEECCCCCCEEHHHHHHHHHHHHCCCCCHHHHHCCCCC
SQSPSISLNGELVSQERLQQARIDGRLTLVSQIGEGVELTRTVSVSTTQPVVIEALSFKN
CCCCCEEECCCHHHHHHHHHHHCCCEEEEHHHCCCCEEEEEEEEECCCCCEEEEEEECCC
TGNAAQILQLGELDYHIDTAKEQGVYGSYLIEATSDKAGTFELEPNDSVTVYLEFKATKT
CCCHHHHEEECCCCEEEECHHHCCCCEEEEEEECCCCCCEEEECCCCCEEEEEEEEEECC
GQNREFDAVKELELRQQYVAGLNNNLQLITPDENINKMFEFAKLRSAESIFRTKGGLMHA
CCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEC
PGGGRYYAAIWANDQAEYINPFFPFLGNDVGNESAINSFEHFARFMNEEGKAIPSSIIAE
CCCCEEEEEEEECCCHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCC
GDDIWNGAGDRGDCAMIAYGASRFALAYGDEDQAKALLPLIDWCIDFSYAKQTDEGVIAS
CCHHCCCCCCCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHCCHHHCCCCCCCEEC
DSDELEGRFPAGDVNLSTNMLTYGALVSSSHLNNELGRTAIAVEYQQRATKLAIDIESYF
CCHHCCCCCCCCCCCCCCCCEEHHHHHHHHHCCHHHCCEEEEEEHHHCCEEEEEEEHHHC
GASVQGFDTYQYYQGNDKLRAWIALPFSFGIFDRKDQTLAAVLSDQLWSVDGIYSEAGNK
CCCCCCCEEEEEECCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHCCCC
TFWDRATLYAFRGIFAAQETDTAMRYFKYYSRKRLLGEHVPYAVEAWPEGDQRHLSAESA
CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCHHHH
LYARVVTEGIFGIEPTGFKRFDIAPYLPATWDNMCLKHIRAFESNFDVCVSRVEGTEQGF
HHHHHHHHCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCC
NVTIEQEQGDLQQFSWDGLSPISISL
EEEEECCCCCHHHCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA