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The map label for this gene is scpB [H]

Identifier: 167624537

GI number: 167624537

Start: 3176829

End: 3177425

Strand: Reverse

Name: scpB [H]

Synonym: Shal_2616

Alternate gene names: 167624537

Gene position: 3177425-3176829 (Counterclockwise)

Preceding gene: 167624538

Following gene: 167624536

Centisome position: 60.79

GC content: 43.05

Gene sequence:

>597_bases
TTGTCTCAGATAAATCCAGATCAGCTTAAGCAGTTAATTGAAGCCAGCCTGTTTGTGTTGGCAAAGCCGATGACGATTAA
AGCATTGAAAGAGACTGTACTGTCTAACTTTAATGTGTCGCGGGTAAAAATTAAGGCATGTATTGATGAGTTACAGCTCG
ATTATGAAGATCGAGGTGTACAATTAGTAAAAGTAGCGGGGGGATATCGATTCCAGACATTGGCTGAATTGAGTCCATTT
TTGCAACCGTTATGGCAAGAAAAAGCACCGAAATATTCGCGTGCGACGTTAGAAACCTTGGCTGTCATTGCTTACCGCCA
ACCTGTCACCCGAGGTGACATTGAGTTTGTACGTGGGGTTGCCGTGAGCAGCCACATTATAAAAAGTTTAAACGATAGAA
ACTGGATTAAAGTTGTTGGACATAAAGAGGTGCCGGGAAGGCCAGCGCTTTATGCAACGACGACCGAGTTTCTAGCTTAT
TTCGGCTTAGACAGTATTGTGGATCTTCCACATTTGTCGGATGCCGAATCATTGGCCGCGCTTTTTTCAACTGAAAAAGT
CGTGACCGAAAATATAGAAGAGTCTACTAATGAGTGA

Upstream 100 bases:

>100_bases
GGTCGTGAGTTTCTTAGCGTTAATGGAGTTAGTCAAAGAGTTGCTGGTTGAGCTTGTACAAGCTGAGCCATTTTCAACTA
TACATGTTAGGGCGTACTGA

Downstream 100 bases:

>100_bases
AAAATTGCAGAAAGTCTTGGCCCGTGCAGGCCATGGCTCCCGTCGTGAGATGGAGGCATGGATTGCTGCAGGTCGAGTTA
GTGTTGACGGTGAAATTGCA

Product: segregation and condensation protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MSQINPDQLKQLIEASLFVLAKPMTIKALKETVLSNFNVSRVKIKACIDELQLDYEDRGVQLVKVAGGYRFQTLAELSPF
LQPLWQEKAPKYSRATLETLAVIAYRQPVTRGDIEFVRGVAVSSHIIKSLNDRNWIKVVGHKEVPGRPALYATTTEFLAY
FGLDSIVDLPHLSDAESLAALFSTEKVVTENIEESTNE

Sequences:

>Translated_198_residues
MSQINPDQLKQLIEASLFVLAKPMTIKALKETVLSNFNVSRVKIKACIDELQLDYEDRGVQLVKVAGGYRFQTLAELSPF
LQPLWQEKAPKYSRATLETLAVIAYRQPVTRGDIEFVRGVAVSSHIIKSLNDRNWIKVVGHKEVPGRPALYATTTEFLAY
FGLDSIVDLPHLSDAESLAALFSTEKVVTENIEESTNE
>Mature_197_residues
SQINPDQLKQLIEASLFVLAKPMTIKALKETVLSNFNVSRVKIKACIDELQLDYEDRGVQLVKVAGGYRFQTLAELSPFL
QPLWQEKAPKYSRATLETLAVIAYRQPVTRGDIEFVRGVAVSSHIIKSLNDRNWIKVVGHKEVPGRPALYATTTEFLAYF
GLDSIVDLPHLSDAESLAALFSTEKVVTENIEESTNE

Specific function: May participate in chromosomal partitioning during cell division (Potential) [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 22166; Mature: 22034

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQINPDQLKQLIEASLFVLAKPMTIKALKETVLSNFNVSRVKIKACIDELQLDYEDRGV
CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCE
QLVKVAGGYRFQTLAELSPFLQPLWQEKAPKYSRATLETLAVIAYRQPVTRGDIEFVRGV
EEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
AVSSHIIKSLNDRNWIKVVGHKEVPGRPALYATTTEFLAYFGLDSIVDLPHLSDAESLAA
HHHHHHHHHCCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCHHHHHCCCCCCCHHHHHH
LFSTEKVVTENIEESTNE
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SQINPDQLKQLIEASLFVLAKPMTIKALKETVLSNFNVSRVKIKACIDELQLDYEDRGV
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCE
QLVKVAGGYRFQTLAELSPFLQPLWQEKAPKYSRATLETLAVIAYRQPVTRGDIEFVRGV
EEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
AVSSHIIKSLNDRNWIKVVGHKEVPGRPALYATTTEFLAYFGLDSIVDLPHLSDAESLAA
HHHHHHHHHCCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCHHHHHCCCCCCCHHHHHH
LFSTEKVVTENIEESTNE
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]