| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is viuA [H]
Identifier: 167624384
GI number: 167624384
Start: 2966004
End: 2968142
Strand: Reverse
Name: viuA [H]
Synonym: Shal_2461
Alternate gene names: 167624384
Gene position: 2968142-2966004 (Counterclockwise)
Preceding gene: 167624385
Following gene: 167624383
Centisome position: 56.79
GC content: 45.86
Gene sequence:
>2139_bases ATGTTAAATCTAAAATCTTATTCGCCAATATCCCTCGCGGTTATTGCAGCACTCTCATCTTCTAACACCTTCGCTAATGC TGATGCATCAAAGACTGACGATGATATCGAAGTCTTGGTTGTGACGTCAGACTTTCGCGGCTCTGATTTAGAAAAGATGC CATCAAGTGTCACCGTTATCGACCAGCAGCAAATTGAAGATGAAGGTGCACAGCACTTTGAAGATATCTTAAATACGGTT GCCAATTTAAACTGGTCTGGCGGTAGCTCTAGACCTAAATACTTTCAAATTCGCGGTGTGGGCGAGCAAGAGGAGTATCA AGGCGCACCTAACTCTTCGGTAGGCTTTGTGGTTGATGATATCGATCTATCTGGTTTAGGTATGGTCTCTAGCATGTATG ATTTACAGCAGGTCGAAGTGCTGAGAGGACCTCAGGGGACACGTTATGGCGCCAATGCCTTGGCGGGCCTTATCTACCTT AAGAGTAATGACCCGACCGATGACTTTGAACATGGCGCCGAGGTCTCGTTTGGTGATGACAATCTGCAGACCTTCAGTGG CTTTAGCTCGGGCCCTCTTACCGATTCAGGTGATCTGCTTTACCGCGTATCCTTGCAGCAGCATCAACAAGACGGTTATC GCGATAACCTTTACCTCGATAGAACAGACACGAATGGTCGCGATGAGTTTACTGGCCGTGCAAAGTTACGTTGGTACGCA ACGGACGATTTAGAAATTGATTTAACCTTGCTACATGCCGACTATGATAATGGCTATGACGCTTGGACACTGGATAATAA CGGTTTTGATACCCTAACCGATGCCCCCGGTGTCGATAAGCAGCGCACGACAGGTTCATCACTTAAGTTTACCTATACCG GAGCTGATAATTTTGAGCTGACCTCTTTAACTTCATTGGCACAATCAGACACTCACCATAACTACGATGGTGACTGGGCA AACCCTGATTACTGGGCTAGCCGAGATTGCGGTGGTAGCCCATGCGAGTACGAATATAACTGGGATAAAAAAGGTGAGCG AAAAACGCTAACTCAAGAGTTTAGATTATCGTCAACTGAATCAGGGCGTATTTTTGCAGATAGCACAGACTGGCTGATTG GCGTTTATGCCATGGATCTACAGGAAGATAACGACACCCTCGATACTTATAACCAGTTATCTGCTGAGTATGAGGCACAG AACTATGCGCTGTTTGGTCAGTTAGATTCTGACTTAGGCGCAAGTTATGCCCTATCTGTAGGTTTGCGTGTTGAGCGCCG AGATAGCGATTACCGTGACTCTGCAGGAGACAGCTTTGGGCCAAGTGAAACCATGTGGGGCGGTCATATTGCATTAAGTA AGGCCTTAAGCGAAAAACATGAATCTTATATTCGTGTGGCTCGAGGCTACAAAGCGGGTGGCTTTAATATGTCGCTGCCA GACGAGCTGGCTGGCAAGAAAGAGTATGACACTGAAATTCTTTATAACTATGAATTGGGTTTGAAGTCTACTTGGTTTGA TGGCCAGGCGAGCACGAATCTTGCCATCTTCTATATGGATAGACAAGATCAACAGGTTGCGGCATCGCAGCAGTCAACGG TTCCGGGCGAAGAGGGTAACTTTATCTTATTCACTGAAAACGCAGGTAGCTCGAATAACTACGGCGCAGAACTTGACGGT AACTGGTACGCGACAGACAACTTGAACCTGTACGGCAGCCTTGGTTGGCTTGAGACGGCCTATGGCGATTATCAATATGA AGATAAGTATGGCGCAGTAGTCGACCTTTCTGGTAGAGAACTGGCGCACTCTCCTAACTATACCTTTAGCATCGGTGCGA CATATCGCAGTGATAATGGTTGGTTTGCCAATGTCAATGCTAGCGGCAAGAGTGATTTTTACTACTCTGACAGTAACGAA TCCAAATCAGATGCATACCAAGTTTTTAATGCCAAAGTGGGTTATGAAGCAGACATCTGGTCAGTTTATCTATGGGGCCG TAATCTATTTGATGAAAAATACGGCGTTCGTGGTTTCTACTTTGGCAATGAGCCTGATTTAGACTGGGCTGATAAGCAAT ATATACGTTACGGTGATCCTCGCCAACTGGGGATGACGTTTAATCTTAAGTTCTTGTAA
Upstream 100 bases:
>100_bases GAACCTGATCCGGCTAATACCGGCGTAGGAATGGGCCAAAAGTCATTTCCCGATCGCTTCTTTACTGATGCCGGATCTCA AAATTTTACTTTGAGGTCCT
Downstream 100 bases:
>100_bases TTAAAGTTATAGTTAAACGTGTGATGTAAGCATGAGTCAGAGTTGGTTAACCGGTTTTGTTGATCACTCTTTTAATTAAA TAATCAAATTGAGCCACCCT
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 712; Mature: 712
Protein sequence:
>712_residues MLNLKSYSPISLAVIAALSSSNTFANADASKTDDDIEVLVVTSDFRGSDLEKMPSSVTVIDQQQIEDEGAQHFEDILNTV ANLNWSGGSSRPKYFQIRGVGEQEEYQGAPNSSVGFVVDDIDLSGLGMVSSMYDLQQVEVLRGPQGTRYGANALAGLIYL KSNDPTDDFEHGAEVSFGDDNLQTFSGFSSGPLTDSGDLLYRVSLQQHQQDGYRDNLYLDRTDTNGRDEFTGRAKLRWYA TDDLEIDLTLLHADYDNGYDAWTLDNNGFDTLTDAPGVDKQRTTGSSLKFTYTGADNFELTSLTSLAQSDTHHNYDGDWA NPDYWASRDCGGSPCEYEYNWDKKGERKTLTQEFRLSSTESGRIFADSTDWLIGVYAMDLQEDNDTLDTYNQLSAEYEAQ NYALFGQLDSDLGASYALSVGLRVERRDSDYRDSAGDSFGPSETMWGGHIALSKALSEKHESYIRVARGYKAGGFNMSLP DELAGKKEYDTEILYNYELGLKSTWFDGQASTNLAIFYMDRQDQQVAASQQSTVPGEEGNFILFTENAGSSNNYGAELDG NWYATDNLNLYGSLGWLETAYGDYQYEDKYGAVVDLSGRELAHSPNYTFSIGATYRSDNGWFANVNASGKSDFYYSDSNE SKSDAYQVFNAKVGYEADIWSVYLWGRNLFDEKYGVRGFYFGNEPDLDWADKQYIRYGDPRQLGMTFNLKFL
Sequences:
>Translated_712_residues MLNLKSYSPISLAVIAALSSSNTFANADASKTDDDIEVLVVTSDFRGSDLEKMPSSVTVIDQQQIEDEGAQHFEDILNTV ANLNWSGGSSRPKYFQIRGVGEQEEYQGAPNSSVGFVVDDIDLSGLGMVSSMYDLQQVEVLRGPQGTRYGANALAGLIYL KSNDPTDDFEHGAEVSFGDDNLQTFSGFSSGPLTDSGDLLYRVSLQQHQQDGYRDNLYLDRTDTNGRDEFTGRAKLRWYA TDDLEIDLTLLHADYDNGYDAWTLDNNGFDTLTDAPGVDKQRTTGSSLKFTYTGADNFELTSLTSLAQSDTHHNYDGDWA NPDYWASRDCGGSPCEYEYNWDKKGERKTLTQEFRLSSTESGRIFADSTDWLIGVYAMDLQEDNDTLDTYNQLSAEYEAQ NYALFGQLDSDLGASYALSVGLRVERRDSDYRDSAGDSFGPSETMWGGHIALSKALSEKHESYIRVARGYKAGGFNMSLP DELAGKKEYDTEILYNYELGLKSTWFDGQASTNLAIFYMDRQDQQVAASQQSTVPGEEGNFILFTENAGSSNNYGAELDG NWYATDNLNLYGSLGWLETAYGDYQYEDKYGAVVDLSGRELAHSPNYTFSIGATYRSDNGWFANVNASGKSDFYYSDSNE SKSDAYQVFNAKVGYEADIWSVYLWGRNLFDEKYGVRGFYFGNEPDLDWADKQYIRYGDPRQLGMTFNLKFL >Mature_712_residues MLNLKSYSPISLAVIAALSSSNTFANADASKTDDDIEVLVVTSDFRGSDLEKMPSSVTVIDQQQIEDEGAQHFEDILNTV ANLNWSGGSSRPKYFQIRGVGEQEEYQGAPNSSVGFVVDDIDLSGLGMVSSMYDLQQVEVLRGPQGTRYGANALAGLIYL KSNDPTDDFEHGAEVSFGDDNLQTFSGFSSGPLTDSGDLLYRVSLQQHQQDGYRDNLYLDRTDTNGRDEFTGRAKLRWYA TDDLEIDLTLLHADYDNGYDAWTLDNNGFDTLTDAPGVDKQRTTGSSLKFTYTGADNFELTSLTSLAQSDTHHNYDGDWA NPDYWASRDCGGSPCEYEYNWDKKGERKTLTQEFRLSSTESGRIFADSTDWLIGVYAMDLQEDNDTLDTYNQLSAEYEAQ NYALFGQLDSDLGASYALSVGLRVERRDSDYRDSAGDSFGPSETMWGGHIALSKALSEKHESYIRVARGYKAGGFNMSLP DELAGKKEYDTEILYNYELGLKSTWFDGQASTNLAIFYMDRQDQQVAASQQSTVPGEEGNFILFTENAGSSNNYGAELDG NWYATDNLNLYGSLGWLETAYGDYQYEDKYGAVVDLSGRELAHSPNYTFSIGATYRSDNGWFANVNASGKSDFYYSDSNE SKSDAYQVFNAKVGYEADIWSVYLWGRNLFDEKYGVRGFYFGNEPDLDWADKQYIRYGDPRQLGMTFNLKFL
Specific function: Receptor for ferric vibriobactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=584, Percent_Identity=21.2328767123288, Blast_Score=67, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug [H]
EC number: NA
Molecular weight: Translated: 79560; Mature: 79560
Theoretical pI: Translated: 4.04; Mature: 4.04
Prosite motif: PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNLKSYSPISLAVIAALSSSNTFANADASKTDDDIEVLVVTSDFRGSDLEKMPSSVTVI CCCCCCCCCCEEEEEEEECCCCCEECCCCCCCCCCEEEEEEECCCCCCCHHHCCCCEEEE DQQQIEDEGAQHFEDILNTVANLNWSGGSSRPKYFQIRGVGEQEEYQGAPNSSVGFVVDD EHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHCCCCCCCCEEEEEC IDLSGLGMVSSMYDLQQVEVLRGPQGTRYGANALAGLIYLKSNDPTDDFEHGAEVSFGDD CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCHHHCCCEEEECCC NLQTFSGFSSGPLTDSGDLLYRVSLQQHQQDGYRDNLYLDRTDTNGRDEFTGRAKLRWYA CCHHHCCCCCCCCCCCCCEEEEEEHHHHHCCCCCCCEEEECCCCCCCCCCCCCEEEEEEE TDDLEIDLTLLHADYDNGYDAWTLDNNGFDTLTDAPGVDKQRTTGSSLKFTYTGADNFEL CCCCEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEE TSLTSLAQSDTHHNYDGDWANPDYWASRDCGGSPCEYEYNWDKKGERKTLTQEFRLSSTE HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHCCCCCC SGRIFADSTDWLIGVYAMDLQEDNDTLDTYNQLSAEYEAQNYALFGQLDSDLGASYALSV CCEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEE GLRVERRDSDYRDSAGDSFGPSETMWGGHIALSKALSEKHESYIRVARGYKAGGFNMSLP EEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC DELAGKKEYDTEILYNYELGLKSTWFDGQASTNLAIFYMDRQDQQVAASQQSTVPGEEGN HHHCCCCCCCCEEEEEEECCCCEEECCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCC FILFTENAGSSNNYGAELDGNWYATDNLNLYGSLGWLETAYGDYQYEDKYGAVVDLSGRE EEEEECCCCCCCCCCEEECCCEEEECCCEEEECCCCEECCCCCCEECCCCCCEEEECCCH LAHSPNYTFSIGATYRSDNGWFANVNASGKSDFYYSDSNESKSDAYQVFNAKVGYEADIW HCCCCCEEEEEEEEEECCCCEEEEECCCCCCCEEECCCCCCCCHHHEEEECCCCCCCCEE SVYLWGRNLFDEKYGVRGFYFGNEPDLDWADKQYIRYGDPRQLGMTFNLKFL EEEEECCCHHHHCCCCEEEECCCCCCCCCCCCHHEECCCCCCCCEEEEEEEC >Mature Secondary Structure MLNLKSYSPISLAVIAALSSSNTFANADASKTDDDIEVLVVTSDFRGSDLEKMPSSVTVI CCCCCCCCCCEEEEEEEECCCCCEECCCCCCCCCCEEEEEEECCCCCCCHHHCCCCEEEE DQQQIEDEGAQHFEDILNTVANLNWSGGSSRPKYFQIRGVGEQEEYQGAPNSSVGFVVDD EHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHCCCCCCCCEEEEEC IDLSGLGMVSSMYDLQQVEVLRGPQGTRYGANALAGLIYLKSNDPTDDFEHGAEVSFGDD CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCHHHCCCEEEECCC NLQTFSGFSSGPLTDSGDLLYRVSLQQHQQDGYRDNLYLDRTDTNGRDEFTGRAKLRWYA CCHHHCCCCCCCCCCCCCEEEEEEHHHHHCCCCCCCEEEECCCCCCCCCCCCCEEEEEEE TDDLEIDLTLLHADYDNGYDAWTLDNNGFDTLTDAPGVDKQRTTGSSLKFTYTGADNFEL CCCCEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEE TSLTSLAQSDTHHNYDGDWANPDYWASRDCGGSPCEYEYNWDKKGERKTLTQEFRLSSTE HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHCCCCCC SGRIFADSTDWLIGVYAMDLQEDNDTLDTYNQLSAEYEAQNYALFGQLDSDLGASYALSV CCEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEE GLRVERRDSDYRDSAGDSFGPSETMWGGHIALSKALSEKHESYIRVARGYKAGGFNMSLP EEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC DELAGKKEYDTEILYNYELGLKSTWFDGQASTNLAIFYMDRQDQQVAASQQSTVPGEEGN HHHCCCCCCCCEEEEEEECCCCEEECCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCC FILFTENAGSSNNYGAELDGNWYATDNLNLYGSLGWLETAYGDYQYEDKYGAVVDLSGRE EEEEECCCCCCCCCCEEECCCEEEECCCEEEECCCCEECCCCCCEECCCCCCEEEECCCH LAHSPNYTFSIGATYRSDNGWFANVNASGKSDFYYSDSNESKSDAYQVFNAKVGYEADIW HCCCCCEEEEEEEEEECCCCEEEEECCCCCCCEEECCCCCCCCHHHEEEECCCCCCCCEE SVYLWGRNLFDEKYGVRGFYFGNEPDLDWADKQYIRYGDPRQLGMTFNLKFL EEEEECCCHHHHCCCCEEEECCCCCCCCCCCCHHEECCCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1317381 [H]