| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624381
Identifier: 167624381
GI number: 167624381
Start: 2963657
End: 2964814
Strand: Reverse
Name: 167624381
Synonym: Shal_2458
Alternate gene names: NA
Gene position: 2964814-2963657 (Counterclockwise)
Preceding gene: 167624382
Following gene: 167624380
Centisome position: 56.72
GC content: 46.2
Gene sequence:
>1158_bases ATGGCTCAAGCTTTAGCTAAAATGCTAGCGCCCTATTTTGTGCAATCAGGGCTGACAAGTGTCAGCCTTATCGCGCCCTT GACTCAAGGGTTGAGTAATCAAAATTACTATATTCGTGGGGTTCACGCGAGTAAGCCTAATGCCGCGGAGTGGGTATTAA GAGTCAATAGCTGGGCAAGCTCACAGATCTGCAATCGAGATGATGAAGTGTCAAATTGGCTGCTTGCAAGTGAGGAGCGG CTCGCACCACAAATTGTCTATGTTAGTCCAGATAACAGCTTTTATTTGAGTGAGTTTTTTGCGCAAAATGAGCCAGTTTG TTGGAGTGAGCTGATTAGTGCGAATGGGTCACACCCCCTTACCACGACCCATAATCTCTGGCCAGACGCCGAGCGAAAAT TGCTCGAGTTATTAAATGGTTTAAAACAATTACCTCTGCCAAGCAATGTGATGAATGTCGATACGCAGTGGCAGAGATAC CTTGCGCGTTTAACCAACATGAACCTGCAATTGACTCGCTTGCTGGGCTTATCGGATATCGAGTGCAGCGTCGCTGATGT TATAGCTCCTCCTAGCGCGAGCGTTCATCGTTCGGACATTAAAAGTCGAGCGAGACAAAGTGTCAGTCATACAAGTGAGG GCAATAATCTTGCCGAGCAAGCATTGTTAAGTCGTTGGCAACAGCTATATCAACAGCTTTTGGCTCAATCTCATCAGATT GATGCCATGCTTGATAGCCTAGCTGCTTGTGTGAACAATCTGCAATTTAGCCACCGAGACTTAAACCCATATAATATTTT GGTCGTTGAAGATAAGCTCAAATGCATTGATTTTGAATATGCCTGTCGCTCACACCCTTTATGCGATCTTGCTGCTGTGC TTGCCAGTCATTCTCTGTCATCTGAGCAGCGCCATTGGCTGATTGACAGTTATTTAGCCACAAACCTGAACCTAAATGAC CAGGCAAGAGATGCGGTCACTTCCGCCGTCGATCTATATTGGGTCTTCGCGGTGTGCTGGGCACTACAAATGGCTTTTGA CAGCCTAGTAAAAGAGGGCCAGTTGATTAAACTCGATACGGGTGAAGCATATCACTTAGTCGAAGATTACCTGAACTGCG CTCAGCAATACGATGAGTTAATAGCCTGCTGCACCTAG
Upstream 100 bases:
>100_bases TTATTTAGGTATGGTTGTGTTTGGCTATTACATGTGGCGCAACAAAATGAAAGTGCAGAAAACAGCGCAACAAATTGATT TAACAGCAGGTACCGCCTAA
Downstream 100 bases:
>100_bases CTAGCGACGCTGAAAAATCAGCGAGTATCGTGGCAGACGTTAGCGTGTATCTGTGTCTGCCAATGGCTTTTTGGGTATTG AGTTAACGTCTATTTTTACC
Product: aminoglycoside phosphotransferase
Products: NA
Alternate protein names: Phosphotransferase Family Protein
Number of amino acids: Translated: 385; Mature: 384
Protein sequence:
>385_residues MAQALAKMLAPYFVQSGLTSVSLIAPLTQGLSNQNYYIRGVHASKPNAAEWVLRVNSWASSQICNRDDEVSNWLLASEER LAPQIVYVSPDNSFYLSEFFAQNEPVCWSELISANGSHPLTTTHNLWPDAERKLLELLNGLKQLPLPSNVMNVDTQWQRY LARLTNMNLQLTRLLGLSDIECSVADVIAPPSASVHRSDIKSRARQSVSHTSEGNNLAEQALLSRWQQLYQQLLAQSHQI DAMLDSLAACVNNLQFSHRDLNPYNILVVEDKLKCIDFEYACRSHPLCDLAAVLASHSLSSEQRHWLIDSYLATNLNLND QARDAVTSAVDLYWVFAVCWALQMAFDSLVKEGQLIKLDTGEAYHLVEDYLNCAQQYDELIACCT
Sequences:
>Translated_385_residues MAQALAKMLAPYFVQSGLTSVSLIAPLTQGLSNQNYYIRGVHASKPNAAEWVLRVNSWASSQICNRDDEVSNWLLASEER LAPQIVYVSPDNSFYLSEFFAQNEPVCWSELISANGSHPLTTTHNLWPDAERKLLELLNGLKQLPLPSNVMNVDTQWQRY LARLTNMNLQLTRLLGLSDIECSVADVIAPPSASVHRSDIKSRARQSVSHTSEGNNLAEQALLSRWQQLYQQLLAQSHQI DAMLDSLAACVNNLQFSHRDLNPYNILVVEDKLKCIDFEYACRSHPLCDLAAVLASHSLSSEQRHWLIDSYLATNLNLND QARDAVTSAVDLYWVFAVCWALQMAFDSLVKEGQLIKLDTGEAYHLVEDYLNCAQQYDELIACCT >Mature_384_residues AQALAKMLAPYFVQSGLTSVSLIAPLTQGLSNQNYYIRGVHASKPNAAEWVLRVNSWASSQICNRDDEVSNWLLASEERL APQIVYVSPDNSFYLSEFFAQNEPVCWSELISANGSHPLTTTHNLWPDAERKLLELLNGLKQLPLPSNVMNVDTQWQRYL ARLTNMNLQLTRLLGLSDIECSVADVIAPPSASVHRSDIKSRARQSVSHTSEGNNLAEQALLSRWQQLYQQLLAQSHQID AMLDSLAACVNNLQFSHRDLNPYNILVVEDKLKCIDFEYACRSHPLCDLAAVLASHSLSSEQRHWLIDSYLATNLNLNDQ ARDAVTSAVDLYWVFAVCWALQMAFDSLVKEGQLIKLDTGEAYHLVEDYLNCAQQYDELIACCT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43262; Mature: 43131
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: PS00435 PEROXIDASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQALAKMLAPYFVQSGLTSVSLIAPLTQGLSNQNYYIRGVHASKPNAAEWVLRVNSWAS CHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHEEEECCCCC SQICNRDDEVSNWLLASEERLAPQIVYVSPDNSFYLSEFFAQNEPVCWSELISANGSHPL HHHCCCCHHHHHHHHCCHHCCCCEEEEECCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCC TTTHNLWPDAERKLLELLNGLKQLPLPSNVMNVDTQWQRYLARLTNMNLQLTRLLGLSDI CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEHHHHCCCCC ECSVADVIAPPSASVHRSDIKSRARQSVSHTSEGNNLAEQALLSRWQQLYQQLLAQSHQI CCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHH DAMLDSLAACVNNLQFSHRDLNPYNILVVEDKLKCIDFEYACRSHPLCDLAAVLASHSLS HHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHCCHHHHHCCCCHHHHHHHHHHHCCC SEQRHWLIDSYLATNLNLNDQARDAVTSAVDLYWVFAVCWALQMAFDSLVKEGQLIKLDT CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC GEAYHLVEDYLNCAQQYDELIACCT CCHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AQALAKMLAPYFVQSGLTSVSLIAPLTQGLSNQNYYIRGVHASKPNAAEWVLRVNSWAS HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHEEEECCCCC SQICNRDDEVSNWLLASEERLAPQIVYVSPDNSFYLSEFFAQNEPVCWSELISANGSHPL HHHCCCCHHHHHHHHCCHHCCCCEEEEECCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCC TTTHNLWPDAERKLLELLNGLKQLPLPSNVMNVDTQWQRYLARLTNMNLQLTRLLGLSDI CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEHHHHCCCCC ECSVADVIAPPSASVHRSDIKSRARQSVSHTSEGNNLAEQALLSRWQQLYQQLLAQSHQI CCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHH DAMLDSLAACVNNLQFSHRDLNPYNILVVEDKLKCIDFEYACRSHPLCDLAAVLASHSLS HHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHCCHHHHHCCCCHHHHHHHHHHHCCC SEQRHWLIDSYLATNLNLNDQARDAVTSAVDLYWVFAVCWALQMAFDSLVKEGQLIKLDT CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC GEAYHLVEDYLNCAQQYDELIACCT CCHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA