| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624366
Identifier: 167624366
GI number: 167624366
Start: 2948167
End: 2949324
Strand: Reverse
Name: 167624366
Synonym: Shal_2443
Alternate gene names: NA
Gene position: 2949324-2948167 (Counterclockwise)
Preceding gene: 167624367
Following gene: 167624365
Centisome position: 56.43
GC content: 45.51
Gene sequence:
>1158_bases ATGTTGCATAAACTCTTTTCTAATCGTGGCGGGAGTCTGGATGCAGGTGAAGCAAAACTTTGGTCTGAATTCGTAACGCA GAATTTGACCCGTCAAGATAATATGCCTGAGACCGTTCAGCCAAGCCCTTGGTATATAAAATTGATGCAAACATTTGCCG CTTGGGTGGCTTCACTGTTCATTCTTGCCTTTAGCATCAGCTTTTTTAACCTCTTCTTCGATGATTTAGACACTGGCTTC GCGACTATTGTGGGGATATTTTACAGCGGCTTTGGCATTTTGCTCTATCGCCTCAGGGCTGCTAAGTCGTTGTTTGTTAA TCAGATGGCACTCGCCTTAAGCCTATGTGGACTGCTGTCGCTTGGCTATGGCATGACAGGCTGGTTCGCCGACAGCTTAG GCGAGAATATTGGACTCGCATGGTATTTAACCTTTGGGGGTATTTTACTGCTCAATTGGTTTTGGATAGGGCACGCTAGC CACCAATATGTGATGAGCTTTGCCATGATAGCCTGTCTGGTCGGTGCTGGTTATGAGCTAAGTCTACTTGAGCTTATGCC AACGCTCATCATGTTACTGTTTGCCATTGTCTGGTTGAACCACGGTAAAAGCGGCAGACATCTTGCCCGTTTGAGTGCCC TTGGCCATATGCTCGCCTTGTGGGTGATACTCATTCAGTTACCACTCTTAGCGAATCATTCAACAGCCAGCCAATCTGTA TTAATCACTGGAGATAACCTTCCCATATTGGCTACATGGACCAATGTGTTATCAGTAGTTACAACGCTAATTGTCTTAGT CATATTGCTGGTGCAGATTTTACGGTCATTACCCTTAAGCCTGAGCAGTAAGCAGGCGCAGATAAGCGCACTAGCAATTC TGCTGCTGGCAGGGCTTGCTATCCCTATGACGGGTCTATCGGCAGCAGTGTTGGTGATAATGTTGGGCTTTTACGTCAGA GAAAGAGCCGTTTTCTTCATAGGCCTTACAGGATTATTGAGTTTTATTGGATGGTACTACTACAGTTTGCAGTTACCCCT ACTGGAAAAGTCACTCTGGTTGATCTCATTAGGCGCATTACTGATCTTAGCTAAGTTACTATTAACTTGGCTTTTACCTA AGCTGGATAAGCATGGGGGAGAGCAGCATGAAGGTTAA
Upstream 100 bases:
>100_bases ATGTTGTTAGTATTAGGGTTAACCATTATTGGCTCAACGAGCTTGCTCTCTTTATGGCTTAAGCAGCGTCAGCAAGCTTT TCAACTGGATAGGGGGCACG
Downstream 100 bases:
>100_bases GTTACCCATCTCAGTTTATATTCTGATAGCGACCATTTTTGCCATATTGACCTTGGTTAATTGGGATATCTATCAAAAAG AGCAGCATTTAGCTCATGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 385; Mature: 385
Protein sequence:
>385_residues MLHKLFSNRGGSLDAGEAKLWSEFVTQNLTRQDNMPETVQPSPWYIKLMQTFAAWVASLFILAFSISFFNLFFDDLDTGF ATIVGIFYSGFGILLYRLRAAKSLFVNQMALALSLCGLLSLGYGMTGWFADSLGENIGLAWYLTFGGILLLNWFWIGHAS HQYVMSFAMIACLVGAGYELSLLELMPTLIMLLFAIVWLNHGKSGRHLARLSALGHMLALWVILIQLPLLANHSTASQSV LITGDNLPILATWTNVLSVVTTLIVLVILLVQILRSLPLSLSSKQAQISALAILLLAGLAIPMTGLSAAVLVIMLGFYVR ERAVFFIGLTGLLSFIGWYYYSLQLPLLEKSLWLISLGALLILAKLLLTWLLPKLDKHGGEQHEG
Sequences:
>Translated_385_residues MLHKLFSNRGGSLDAGEAKLWSEFVTQNLTRQDNMPETVQPSPWYIKLMQTFAAWVASLFILAFSISFFNLFFDDLDTGF ATIVGIFYSGFGILLYRLRAAKSLFVNQMALALSLCGLLSLGYGMTGWFADSLGENIGLAWYLTFGGILLLNWFWIGHAS HQYVMSFAMIACLVGAGYELSLLELMPTLIMLLFAIVWLNHGKSGRHLARLSALGHMLALWVILIQLPLLANHSTASQSV LITGDNLPILATWTNVLSVVTTLIVLVILLVQILRSLPLSLSSKQAQISALAILLLAGLAIPMTGLSAAVLVIMLGFYVR ERAVFFIGLTGLLSFIGWYYYSLQLPLLEKSLWLISLGALLILAKLLLTWLLPKLDKHGGEQHEG >Mature_385_residues MLHKLFSNRGGSLDAGEAKLWSEFVTQNLTRQDNMPETVQPSPWYIKLMQTFAAWVASLFILAFSISFFNLFFDDLDTGF ATIVGIFYSGFGILLYRLRAAKSLFVNQMALALSLCGLLSLGYGMTGWFADSLGENIGLAWYLTFGGILLLNWFWIGHAS HQYVMSFAMIACLVGAGYELSLLELMPTLIMLLFAIVWLNHGKSGRHLARLSALGHMLALWVILIQLPLLANHSTASQSV LITGDNLPILATWTNVLSVVTTLIVLVILLVQILRSLPLSLSSKQAQISALAILLLAGLAIPMTGLSAAVLVIMLGFYVR ERAVFFIGLTGLLSFIGWYYYSLQLPLLEKSLWLISLGALLILAKLLLTWLLPKLDKHGGEQHEG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42470; Mature: 42470
Theoretical pI: Translated: 8.23; Mature: 8.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLHKLFSNRGGSLDAGEAKLWSEFVTQNLTRQDNMPETVQPSPWYIKLMQTFAAWVASLF CCCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH ILAFSISFFNLFFDDLDTGFATIVGIFYSGFGILLYRLRAAKSLFVNQMALALSLCGLLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGYGMTGWFADSLGENIGLAWYLTFGGILLLNWFWIGHASHQYVMSFAMIACLVGAGYEL HCCCCHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCH SLLELMPTLIMLLFAIVWLNHGKSGRHLARLSALGHMLALWVILIQLPLLANHSTASQSV HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE LITGDNLPILATWTNVLSVVTTLIVLVILLVQILRSLPLSLSSKQAQISALAILLLAGLA EEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH IPMTGLSAAVLVIMLGFYVRERAVFFIGLTGLLSFIGWYYYSLQLPLLEKSLWLISLGAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH LILAKLLLTWLLPKLDKHGGEQHEG HHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MLHKLFSNRGGSLDAGEAKLWSEFVTQNLTRQDNMPETVQPSPWYIKLMQTFAAWVASLF CCCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH ILAFSISFFNLFFDDLDTGFATIVGIFYSGFGILLYRLRAAKSLFVNQMALALSLCGLLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGYGMTGWFADSLGENIGLAWYLTFGGILLLNWFWIGHASHQYVMSFAMIACLVGAGYEL HCCCCHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCH SLLELMPTLIMLLFAIVWLNHGKSGRHLARLSALGHMLALWVILIQLPLLANHSTASQSV HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE LITGDNLPILATWTNVLSVVTTLIVLVILLVQILRSLPLSLSSKQAQISALAILLLAGLA EEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH IPMTGLSAAVLVIMLGFYVRERAVFFIGLTGLLSFIGWYYYSLQLPLLEKSLWLISLGAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH LILAKLLLTWLLPKLDKHGGEQHEG HHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA