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The map label for this gene is ynaI [C]

Identifier: 167624322

GI number: 167624322

Start: 2899303

End: 2900904

Strand: Reverse

Name: ynaI [C]

Synonym: Shal_2399

Alternate gene names: 167624322

Gene position: 2900904-2899303 (Counterclockwise)

Preceding gene: 167624324

Following gene: 167624321

Centisome position: 55.5

GC content: 45.63

Gene sequence:

>1602_bases
ATGTTACGACCTATCTCTGCTTTACTGTTATTTATTTCGCTAATATTTCCACTCTTTGTCCATAGTACGGCCGTTATCAA
GGCCGCGCAGCAACCGACAGAGGAGGTAAAGCCTGCACCGACTAAAGAGGAGTCGTACGAGTATCAAGACGGCTTATTTA
GAGATACGCCTAGGGGCACTCTTGCGGGCCTTTTTGAGGCTGCTTTTGAACAAGATTATGATAAAGCGGCTAAATATTTA
GACTTACGTTACTTACCTGATGATATGGATGCCGCACTGGGTCCTGAATATGCTAAACAACTGATTGCGATCATCGAACG
CAATATTTGGGTCAATCTGCAAGAGATCAACGATACGCCCGGCGGAACAAGTGGAGACCAACTGCCCAATTATCGTGATG
CCTTTGGTCGGGTGGAGATTAAGGGCAGTGAGATCACCCTACTGCTGCAAAAGGTGCCGAGTAAAGAACTAGGCTCTATC
TGGAAGATCTCAAATGCCACTATCGCCAAGGTGCCATTGCTATATAGCGAGTTAGGCTATGGACCTGTGGTTGAGTGGTT
CGTACAGCACATTCCTCAAGGTCACCTGTTTAAACTAAACCTTTGGGAGTGGGCACTGCTAGTTTGCTATCTATTGTTGG
CCTTGCTCGTTGTTATTCCAATCACCTGGGTAGCAAAAAAACTGATATTGCGCAGTGATTATCAGTATAAAGAGGATGTC
GCTCATCTTGTTATCGGGCCATTTAGACTACTCGCTGCCTTGTTATTGGTAAGGGCATGGATGGCACATACCACGCTATC
GGCAAATGTAATTGAAGTCGTCAACACTGGCGTTTTGCTCCTTATTGCAGTGATCTGGTTTATTTGGTCATTGACCGATG
TAGTTCAAAACAGTTTGCGCCTACGTTGGATAAAGCGGGGAAACAGCCAAAGTGCATCGTTGTTAAGACCGCTAGCCAAC
TTTACAAGAGTCATGCTGGTGGCGTTATCGGTACTTATCTGGTTAGAGCATTTGGGCTTTGATGCCTCCACCATTTTAGC
CGGTTTAGGGATAGGTGGTATTGCCATCGCATTGGCCTCAAAGCAGTCGATTGAAAACTTTATTGGCACTATCACCCTGT
ATTCATCGGCGCCGATTAAGGTAGGCAATATTGGTCGCTTTGGCAGCATTACCGGCACAGTGGAGGAGATAGGGCTGAGG
TGTACACGTATACGAACTATCGATCGTTCAGTGATCAATGTGCCAAATGCGAGATTGTCGGAGATGGATATCGAAAATAT
TTCTGAGCGGGAAAAAATTCGCCTGAAAACGGATATTCGTTTGGATTATCGTACAACTACCGAGCAAATTCACAACATCA
TCGATGATATACGCACCTTATTAGAAGGACATGAAAAAGTGGAAGAAAGCCCACTGAGAGTGACCTTTAAAGGTTTTGGC
TTATACGGTTTGCAGCTCAATGTGTTTGCCTATATCGGTACGACAGATTTTGCTGAGTTTCAGTTGGTGTCTGAGGAGCT
TCATTTTGGCATTATGAATATTGTCGCCGAGCACGGCTCACGGATAGTGCCTGTGGTGCCTATCGCTGCGGCTCAGTGCT
AA

Upstream 100 bases:

>100_bases
TTTAGTCTTGCCTGAGTGTTAACGGCTGGTTAAAGCTTGCTAGAATATGTGGAACGCTTGTTCTGTTAGTGCAAGGTAAC
GTCTTTTGAATGGAGTCTTC

Downstream 100 bases:

>100_bases
TATGTAGTGCCTATCGCTGCGGCTCAGGCCTAGGTATTGGTGAATCTCTATAAAAACCTAAATTGTGGGCTAGGTAAATG
ATTTATGTGTATAAATCATT

Product: mechanosensitive ion channel protein MscS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 533; Mature: 533

Protein sequence:

>533_residues
MLRPISALLLFISLIFPLFVHSTAVIKAAQQPTEEVKPAPTKEESYEYQDGLFRDTPRGTLAGLFEAAFEQDYDKAAKYL
DLRYLPDDMDAALGPEYAKQLIAIIERNIWVNLQEINDTPGGTSGDQLPNYRDAFGRVEIKGSEITLLLQKVPSKELGSI
WKISNATIAKVPLLYSELGYGPVVEWFVQHIPQGHLFKLNLWEWALLVCYLLLALLVVIPITWVAKKLILRSDYQYKEDV
AHLVIGPFRLLAALLLVRAWMAHTTLSANVIEVVNTGVLLLIAVIWFIWSLTDVVQNSLRLRWIKRGNSQSASLLRPLAN
FTRVMLVALSVLIWLEHLGFDASTILAGLGIGGIAIALASKQSIENFIGTITLYSSAPIKVGNIGRFGSITGTVEEIGLR
CTRIRTIDRSVINVPNARLSEMDIENISEREKIRLKTDIRLDYRTTTEQIHNIIDDIRTLLEGHEKVEESPLRVTFKGFG
LYGLQLNVFAYIGTTDFAEFQLVSEELHFGIMNIVAEHGSRIVPVVPIAAAQC

Sequences:

>Translated_533_residues
MLRPISALLLFISLIFPLFVHSTAVIKAAQQPTEEVKPAPTKEESYEYQDGLFRDTPRGTLAGLFEAAFEQDYDKAAKYL
DLRYLPDDMDAALGPEYAKQLIAIIERNIWVNLQEINDTPGGTSGDQLPNYRDAFGRVEIKGSEITLLLQKVPSKELGSI
WKISNATIAKVPLLYSELGYGPVVEWFVQHIPQGHLFKLNLWEWALLVCYLLLALLVVIPITWVAKKLILRSDYQYKEDV
AHLVIGPFRLLAALLLVRAWMAHTTLSANVIEVVNTGVLLLIAVIWFIWSLTDVVQNSLRLRWIKRGNSQSASLLRPLAN
FTRVMLVALSVLIWLEHLGFDASTILAGLGIGGIAIALASKQSIENFIGTITLYSSAPIKVGNIGRFGSITGTVEEIGLR
CTRIRTIDRSVINVPNARLSEMDIENISEREKIRLKTDIRLDYRTTTEQIHNIIDDIRTLLEGHEKVEESPLRVTFKGFG
LYGLQLNVFAYIGTTDFAEFQLVSEELHFGIMNIVAEHGSRIVPVVPIAAAQC
>Mature_533_residues
MLRPISALLLFISLIFPLFVHSTAVIKAAQQPTEEVKPAPTKEESYEYQDGLFRDTPRGTLAGLFEAAFEQDYDKAAKYL
DLRYLPDDMDAALGPEYAKQLIAIIERNIWVNLQEINDTPGGTSGDQLPNYRDAFGRVEIKGSEITLLLQKVPSKELGSI
WKISNATIAKVPLLYSELGYGPVVEWFVQHIPQGHLFKLNLWEWALLVCYLLLALLVVIPITWVAKKLILRSDYQYKEDV
AHLVIGPFRLLAALLLVRAWMAHTTLSANVIEVVNTGVLLLIAVIWFIWSLTDVVQNSLRLRWIKRGNSQSASLLRPLAN
FTRVMLVALSVLIWLEHLGFDASTILAGLGIGGIAIALASKQSIENFIGTITLYSSAPIKVGNIGRFGSITGTVEEIGLR
CTRIRTIDRSVINVPNARLSEMDIENISEREKIRLKTDIRLDYRTTTEQIHNIIDDIRTLLEGHEKVEESPLRVTFKGFG
LYGLQLNVFAYIGTTDFAEFQLVSEELHFGIMNIVAEHGSRIVPVVPIAAAQC

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1787591, Length=227, Percent_Identity=30.3964757709251, Blast_Score=110, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 59631; Mature: 59631

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: PS01246 UPF0003

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRPISALLLFISLIFPLFVHSTAVIKAAQQPTEEVKPAPTKEESYEYQDGLFRDTPRGT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHCCCCCCCCCHH
LAGLFEAAFEQDYDKAAKYLDLRYLPDDMDAALGPEYAKQLIAIIERNIWVNLQEINDTP
HHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHCCHHHHHHHHHHHHHHHEEEEEECCCCC
GGTSGDQLPNYRDAFGRVEIKGSEITLLLQKVPSKELGSIWKISNATIAKVPLLYSELGY
CCCCCCCCCCHHHCCCEEEECCCCEEEHHHHCCCHHHCCEEEECCCCHHHHHHHHHHCCC
GPVVEWFVQHIPQGHLFKLNLWEWALLVCYLLLALLVVIPITWVAKKLILRSDYQYKEDV
CHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
AHLVIGPFRLLAALLLVRAWMAHTTLSANVIEVVNTGVLLLIAVIWFIWSLTDVVQNSLR
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
LRWIKRGNSQSASLLRPLANFTRVMLVALSVLIWLEHLGFDASTILAGLGIGGIAIALAS
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHH
KQSIENFIGTITLYSSAPIKVGNIGRFGSITGTVEEIGLRCTRIRTIDRSVINVPNARLS
HHHHHHHHHEEEEECCCCEEECCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCHHH
EMDIENISEREKIRLKTDIRLDYRTTTEQIHNIIDDIRTLLEGHEKVEESPLRVTFKGFG
HCCHHCCCCHHHEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCE
LYGLQLNVFAYIGTTDFAEFQLVSEELHFGIMNIVAEHGSRIVPVVPIAAAQC
EEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
>Mature Secondary Structure
MLRPISALLLFISLIFPLFVHSTAVIKAAQQPTEEVKPAPTKEESYEYQDGLFRDTPRGT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHCCCCCCCCCHH
LAGLFEAAFEQDYDKAAKYLDLRYLPDDMDAALGPEYAKQLIAIIERNIWVNLQEINDTP
HHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHCCHHHHHHHHHHHHHHHEEEEEECCCCC
GGTSGDQLPNYRDAFGRVEIKGSEITLLLQKVPSKELGSIWKISNATIAKVPLLYSELGY
CCCCCCCCCCHHHCCCEEEECCCCEEEHHHHCCCHHHCCEEEECCCCHHHHHHHHHHCCC
GPVVEWFVQHIPQGHLFKLNLWEWALLVCYLLLALLVVIPITWVAKKLILRSDYQYKEDV
CHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
AHLVIGPFRLLAALLLVRAWMAHTTLSANVIEVVNTGVLLLIAVIWFIWSLTDVVQNSLR
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
LRWIKRGNSQSASLLRPLANFTRVMLVALSVLIWLEHLGFDASTILAGLGIGGIAIALAS
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHH
KQSIENFIGTITLYSSAPIKVGNIGRFGSITGTVEEIGLRCTRIRTIDRSVINVPNARLS
HHHHHHHHHEEEEECCCCEEECCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCHHH
EMDIENISEREKIRLKTDIRLDYRTTTEQIHNIIDDIRTLLEGHEKVEESPLRVTFKGFG
HCCHHCCCCHHHEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCE
LYGLQLNVFAYIGTTDFAEFQLVSEELHFGIMNIVAEHGSRIVPVVPIAAAQC
EEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]