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The map label for this gene is yebR [H]

Identifier: 167624290

GI number: 167624290

Start: 2866482

End: 2866940

Strand: Reverse

Name: yebR [H]

Synonym: Shal_2366

Alternate gene names: 167624290

Gene position: 2866940-2866482 (Counterclockwise)

Preceding gene: 167624291

Following gene: 167624289

Centisome position: 54.85

GC content: 41.39

Gene sequence:

>459_bases
ATGGTGGACGCTTTTTACGACACGTTGAATCGTCAGGTGCAGGCATTGTTTGCAGATGAAGATGACACTATTGCAGCACT
GGCCAATTTTTCAGCACTGATAAATGACAGCCTCGATGATCTCAATTGGGTTGGATTCTATTTATTGAAAAATGATCAGT
TAGTATTAGGGCCATTTCAAGGTAAGTTAGCTTGCTCTCGAATTCCTGTAGGCAAAGGTGTTTGTGGCACCGCTGTGGCA
TTAAATTCAACACAACGAATTGGCGATGTTCACCAGTTTGCGGGTCACATCGCATGTGATAGTGCTAGCAACTCAGAATT
AGTTGTGCCTTTACGGAAAAATGGATCTGTTATAGGTGTACTCGATATTGATAGCCCGTCGTTATCAAGATTCAGTGAAA
TTGATCAACAAGGCGTCGAAACTTTGGTAAAAAGTCTCGAATTTTGCCTATTTGGTTAA

Upstream 100 bases:

>100_bases
AAAAGCAGAAAAATAAAACTCCTTGTTCATGTACATCGATTTGTTGTTAGAATGCTGTGATTGTATTTTTGTTTTTAGAT
AAAACTGTTATGAACTATTA

Downstream 100 bases:

>100_bases
TCTACGACCAATTATCGCTAATTGGAGGTCGCAATCATTTGAAGCCTCTCTATAATAAGCGGTTTGGGTAATGAAAAAAA
TAAACACATTTACATTCAAG

Product: putative GAF sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MVDAFYDTLNRQVQALFADEDDTIAALANFSALINDSLDDLNWVGFYLLKNDQLVLGPFQGKLACSRIPVGKGVCGTAVA
LNSTQRIGDVHQFAGHIACDSASNSELVVPLRKNGSVIGVLDIDSPSLSRFSEIDQQGVETLVKSLEFCLFG

Sequences:

>Translated_152_residues
MVDAFYDTLNRQVQALFADEDDTIAALANFSALINDSLDDLNWVGFYLLKNDQLVLGPFQGKLACSRIPVGKGVCGTAVA
LNSTQRIGDVHQFAGHIACDSASNSELVVPLRKNGSVIGVLDIDSPSLSRFSEIDQQGVETLVKSLEFCLFG
>Mature_152_residues
MVDAFYDTLNRQVQALFADEDDTIAALANFSALINDSLDDLNWVGFYLLKNDQLVLGPFQGKLACSRIPVGKGVCGTAVA
LNSTQRIGDVHQFAGHIACDSASNSELVVPLRKNGSVIGVLDIDSPSLSRFSEIDQQGVETLVKSLEFCLFG

Specific function: Unknown

COG id: COG1956

COG function: function code T; GAF domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the free Met sulfoxide reductase family [H]

Homologues:

Organism=Escherichia coli, GI171474009, Length=146, Percent_Identity=61.6438356164384, Blast_Score=184, Evalue=3e-48,
Organism=Saccharomyces cerevisiae, GI6322781, Length=137, Percent_Identity=43.0656934306569, Blast_Score=112, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003018
- InterPro:   IPR000614 [H]

Pfam domain/function: PF01590 GAF [H]

EC number: NA

Molecular weight: Translated: 16368; Mature: 16368

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: PS01320 UPF0067

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDAFYDTLNRQVQALFADEDDTIAALANFSALINDSLDDLNWVGFYLLKNDQLVLGPFQ
CCCHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEECCC
GKLACSRIPVGKGVCGTAVALNSTQRIGDVHQFAGHIACDSASNSELVVPLRKNGSVIGV
CCEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHCEEEECCCCCCEEEEEEECCCCEEEE
LDIDSPSLSRFSEIDQQGVETLVKSLEFCLFG
EECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVDAFYDTLNRQVQALFADEDDTIAALANFSALINDSLDDLNWVGFYLLKNDQLVLGPFQ
CCCHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEECCC
GKLACSRIPVGKGVCGTAVALNSTQRIGDVHQFAGHIACDSASNSELVVPLRKNGSVIGV
CCEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHCEEEECCCCCCEEEEEEECCCCEEEE
LDIDSPSLSRFSEIDQQGVETLVKSLEFCLFG
EECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503; 10493123 [H]