| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624274
Identifier: 167624274
GI number: 167624274
Start: 2838651
End: 2840525
Strand: Reverse
Name: 167624274
Synonym: Shal_2350
Alternate gene names: NA
Gene position: 2840525-2838651 (Counterclockwise)
Preceding gene: 167624275
Following gene: 167624273
Centisome position: 54.34
GC content: 44.48
Gene sequence:
>1875_bases ATGAAGTTTAAGTTGGATAAAACCCTATCGTTAGTAGCCGTAGGTGTATTAAGCGTACTTCAAGGTGTGCAAGCGGCACC TGTTTATGAAATTGTTAACATCGATGGCTACCCAAATGTACAAAACGGCACCTACGATCTTAACGGCACGATAGCTAATA CTCGTAACGGTTATGGCATGGCTGTGAATGCTAACAATCAGGCGGTCGGTGCCGCCAAAGGTAAGAAAAAGCTAACGGTT TCAGAAGACGACGATGGTGTTATTGATATTGAAGATGGCGTTGCTGACTCTGAAACGATTACCTATTCAGTTAACCTGCC GATTGTTGCCAACAACTTTACTTTTACTTCAACTGGTAATGCTTGGATCCCAACATTTGAGAGCGTCAATGGCACAACTG CGCCGACCTTTCCTGAAGACGACACAACGGTTAACTCGGTCGATACCTTCTTCTACGACATTAATGACAGCGATCTAAAA GTCGGTGCAATGACTGCACCAGAGAAAACAGTCAAGTATGACGGTAGTAGTGAAACGCAGGAGTTTTGGTATTACCGTGA TTACGAACAGCGCGGTTTTGTCAAATCTGGCACTGATGCTGAAATACCGTTAATCCCTCCTTATACTGATTATATCTATA AGGAAGGGGAGTCCGGTGAGCAAACTATCAATGTTGGTGGATTCTCTAGTGCTGCAGCGGTTAACGCTAGCGGTTTAGTC GCGGGTTACGCCAGTACCGATATCAGCGATAATAGTGCAGGCATTATTAAGTCTTGTATCGACAACAATAGTGACACCGC GCCGCAGGAAATTTGTATTCAATCAAAACAGTTTCCAAACCAATACGGCTACAGCGATGTTCAATATCAGATCCGTGGTT ATGTTTGGCAGTATGAGTCGGGTAGCGTAACGGCGACTGAGCTTCCGTTAGGCCTCGAAGTGACTAACGACAGTGTTTAT AGTGCACAAGGTCTAGGCGTCAACAGCGAAGGGGTGGTTGCAGGCCGCTCTTATGTCTATCGTAAAAACGATAAAGACAG ATTGTATTATGATGCGGCCTACTGGACTAAAGATTCTGCCACTGGTGAATATAAATATAACTGGGTCGATGTCGATAAAG CGCATGATGTATATTCATCCATCGCCTATGACATTAACGACAATGGCATCGTAGTCGGTAGCTACAATAAGTACATCAAT GGATACAGAAGAGATAAGTTCTTCTATTTCGATACAAAGAGCCCAGAAACCGCGCTGGTTACGCCTAATGATTTCTATAA CAACCTATCGGACTTAAGTAGTCGTGGTCGTGATATTAATAATCAAGGTCAAGTCGTTGGTTATATTGAGACAACGCACG ATAAAGAGAAGCCTCGTCCTAAAGCTGCCTTCCTCTACGATCTACCGACGGATGAGTTTAGCAATGTAAATGACCTACTG ACCTGTGAGTCTAAGGGCTATAAGCAAGATGCTGAAGGAAATTGGCAGCGTCACTTAGTAGAAGTACAAGATGGTTCGGG CAAGACATTAACCTATAAGAGCGAGATCCTCGTCGTTGAGGGCAATAGTATCAACGAAGATGGCACCATAGTGGGAACGG CATTTATTCGTAAGCCTTCTTATAAGTTTGATGATGACGGTAACTTGGTGATTGGTGATAATGGTTTGCCATTCTTTGAG CTTAACGGCTACGGCGACCCTGTAACGTCATTTCTGCCACGCATGGTGGTGCTACAACCGAGTACATCGGGTGCTGAAGC TTGTACGGTTAAAGATGATGATGGTGGCAATGATAACTATGAGCGTAAAGGTGCGGCAAGTTTCGCATGGCTTCTAGCAT TACCGCTGCTATGGTTTAGACGCCGAGCTAAGTAA
Upstream 100 bases:
>100_bases CATTGTCCGATAAGGAGAGTCAGCTTGAAAGTTGCTTTGAGCGATGGGAAGAGCTCGAGTCATTGAAGTAAGCTAAAAAT AATAAATAGGAAGCGAGTTA
Downstream 100 bases:
>100_bases AGCAACTTTGATGATCTTTGAAGTAGAAATCGAGGCCAAGTGCCTCGATTTTTTTTGTCTAAATTTATAAGACTTCTCAA TAGCTTAAAAAATAACCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 624; Mature: 624
Protein sequence:
>624_residues MKFKLDKTLSLVAVGVLSVLQGVQAAPVYEIVNIDGYPNVQNGTYDLNGTIANTRNGYGMAVNANNQAVGAAKGKKKLTV SEDDDGVIDIEDGVADSETITYSVNLPIVANNFTFTSTGNAWIPTFESVNGTTAPTFPEDDTTVNSVDTFFYDINDSDLK VGAMTAPEKTVKYDGSSETQEFWYYRDYEQRGFVKSGTDAEIPLIPPYTDYIYKEGESGEQTINVGGFSSAAAVNASGLV AGYASTDISDNSAGIIKSCIDNNSDTAPQEICIQSKQFPNQYGYSDVQYQIRGYVWQYESGSVTATELPLGLEVTNDSVY SAQGLGVNSEGVVAGRSYVYRKNDKDRLYYDAAYWTKDSATGEYKYNWVDVDKAHDVYSSIAYDINDNGIVVGSYNKYIN GYRRDKFFYFDTKSPETALVTPNDFYNNLSDLSSRGRDINNQGQVVGYIETTHDKEKPRPKAAFLYDLPTDEFSNVNDLL TCESKGYKQDAEGNWQRHLVEVQDGSGKTLTYKSEILVVEGNSINEDGTIVGTAFIRKPSYKFDDDGNLVIGDNGLPFFE LNGYGDPVTSFLPRMVVLQPSTSGAEACTVKDDDGGNDNYERKGAASFAWLLALPLLWFRRRAK
Sequences:
>Translated_624_residues MKFKLDKTLSLVAVGVLSVLQGVQAAPVYEIVNIDGYPNVQNGTYDLNGTIANTRNGYGMAVNANNQAVGAAKGKKKLTV SEDDDGVIDIEDGVADSETITYSVNLPIVANNFTFTSTGNAWIPTFESVNGTTAPTFPEDDTTVNSVDTFFYDINDSDLK VGAMTAPEKTVKYDGSSETQEFWYYRDYEQRGFVKSGTDAEIPLIPPYTDYIYKEGESGEQTINVGGFSSAAAVNASGLV AGYASTDISDNSAGIIKSCIDNNSDTAPQEICIQSKQFPNQYGYSDVQYQIRGYVWQYESGSVTATELPLGLEVTNDSVY SAQGLGVNSEGVVAGRSYVYRKNDKDRLYYDAAYWTKDSATGEYKYNWVDVDKAHDVYSSIAYDINDNGIVVGSYNKYIN GYRRDKFFYFDTKSPETALVTPNDFYNNLSDLSSRGRDINNQGQVVGYIETTHDKEKPRPKAAFLYDLPTDEFSNVNDLL TCESKGYKQDAEGNWQRHLVEVQDGSGKTLTYKSEILVVEGNSINEDGTIVGTAFIRKPSYKFDDDGNLVIGDNGLPFFE LNGYGDPVTSFLPRMVVLQPSTSGAEACTVKDDDGGNDNYERKGAASFAWLLALPLLWFRRRAK >Mature_624_residues MKFKLDKTLSLVAVGVLSVLQGVQAAPVYEIVNIDGYPNVQNGTYDLNGTIANTRNGYGMAVNANNQAVGAAKGKKKLTV SEDDDGVIDIEDGVADSETITYSVNLPIVANNFTFTSTGNAWIPTFESVNGTTAPTFPEDDTTVNSVDTFFYDINDSDLK VGAMTAPEKTVKYDGSSETQEFWYYRDYEQRGFVKSGTDAEIPLIPPYTDYIYKEGESGEQTINVGGFSSAAAVNASGLV AGYASTDISDNSAGIIKSCIDNNSDTAPQEICIQSKQFPNQYGYSDVQYQIRGYVWQYESGSVTATELPLGLEVTNDSVY SAQGLGVNSEGVVAGRSYVYRKNDKDRLYYDAAYWTKDSATGEYKYNWVDVDKAHDVYSSIAYDINDNGIVVGSYNKYIN GYRRDKFFYFDTKSPETALVTPNDFYNNLSDLSSRGRDINNQGQVVGYIETTHDKEKPRPKAAFLYDLPTDEFSNVNDLL TCESKGYKQDAEGNWQRHLVEVQDGSGKTLTYKSEILVVEGNSINEDGTIVGTAFIRKPSYKFDDDGNLVIGDNGLPFFE LNGYGDPVTSFLPRMVVLQPSTSGAEACTVKDDDGGNDNYERKGAASFAWLLALPLLWFRRRAK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68695; Mature: 68695
Theoretical pI: Translated: 4.22; Mature: 4.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFKLDKTLSLVAVGVLSVLQGVQAAPVYEIVNIDGYPNVQNGTYDLNGTIANTRNGYGM CCEECCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEECEEEEECCCCEEE AVNANNQAVGAAKGKKKLTVSEDDDGVIDIEDGVADSETITYSVNLPIVANNFTFTSTGN EEECCCCEEECCCCCCEEEEECCCCCEEEECCCCCCCCEEEEEEECCEEECCEEEECCCC AWIPTFESVNGTTAPTFPEDDTTVNSVDTFFYDINDSDLKVGAMTAPEKTVKYDGSSETQ EECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCE EFWYYRDYEQRGFVKSGTDAEIPLIPPYTDYIYKEGESGEQTINVGGFSSAAAVNASGLV EEEEEECHHHCCCEECCCCCCCEECCCCHHHHEECCCCCCEEEEECCCCCCCEECCCCEE AGYASTDISDNSAGIIKSCIDNNSDTAPQEICIQSKQFPNQYGYSDVQYQIRGYVWQYES EEEECCCCCCCCCHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEECC GSVTATELPLGLEVTNDSVYSAQGLGVNSEGVVAGRSYVYRKNDKDRLYYDAAYWTKDSA CCEEEEECCEEEEECCCCEEEECCCCCCCCCEEECCEEEEECCCCCEEEEEEEEEECCCC TGEYKYNWVDVDKAHDVYSSIAYDINDNGIVVGSYNKYINGYRRDKFFYFDTKSPETALV CCCEEEEEEECCHHHHHHHHEEEEECCCCEEEECHHHHCCCEECCEEEEEECCCCCEEEE TPNDFYNNLSDLSSRGRDINNQGQVVGYIETTHDKEKPRPKAAFLYDLPTDEFSNVNDLL CCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCHHHCCCCCEE TCESKGYKQDAEGNWQRHLVEVQDGSGKTLTYKSEILVVEGNSINEDGTIVGTAFIRKPS EECCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCEEEEEEEECCC YKFDDDGNLVIGDNGLPFFELNGYGDPVTSFLPRMVVLQPSTSGAEACTVKDDDGGNDNY CCCCCCCCEEECCCCCCEEEECCCCCHHHHHCCEEEEEECCCCCCCEEEEECCCCCCCCC ERKGAASFAWLLALPLLWFRRRAK CCCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKFKLDKTLSLVAVGVLSVLQGVQAAPVYEIVNIDGYPNVQNGTYDLNGTIANTRNGYGM CCEECCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEECEEEEECCCCEEE AVNANNQAVGAAKGKKKLTVSEDDDGVIDIEDGVADSETITYSVNLPIVANNFTFTSTGN EEECCCCEEECCCCCCEEEEECCCCCEEEECCCCCCCCEEEEEEECCEEECCEEEECCCC AWIPTFESVNGTTAPTFPEDDTTVNSVDTFFYDINDSDLKVGAMTAPEKTVKYDGSSETQ EECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCE EFWYYRDYEQRGFVKSGTDAEIPLIPPYTDYIYKEGESGEQTINVGGFSSAAAVNASGLV EEEEEECHHHCCCEECCCCCCCEECCCCHHHHEECCCCCCEEEEECCCCCCCEECCCCEE AGYASTDISDNSAGIIKSCIDNNSDTAPQEICIQSKQFPNQYGYSDVQYQIRGYVWQYES EEEECCCCCCCCCHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEECC GSVTATELPLGLEVTNDSVYSAQGLGVNSEGVVAGRSYVYRKNDKDRLYYDAAYWTKDSA CCEEEEECCEEEEECCCCEEEECCCCCCCCCEEECCEEEEECCCCCEEEEEEEEEECCCC TGEYKYNWVDVDKAHDVYSSIAYDINDNGIVVGSYNKYINGYRRDKFFYFDTKSPETALV CCCEEEEEEECCHHHHHHHHEEEEECCCCEEEECHHHHCCCEECCEEEEEECCCCCEEEE TPNDFYNNLSDLSSRGRDINNQGQVVGYIETTHDKEKPRPKAAFLYDLPTDEFSNVNDLL CCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCHHHCCCCCEE TCESKGYKQDAEGNWQRHLVEVQDGSGKTLTYKSEILVVEGNSINEDGTIVGTAFIRKPS EECCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCEEEEEEEECCC YKFDDDGNLVIGDNGLPFFELNGYGDPVTSFLPRMVVLQPSTSGAEACTVKDDDGGNDNY CCCCCCCCEEECCCCCCEEEECCCCCHHHHHCCEEEEEECCCCCCCEEEEECCCCCCCCC ERKGAASFAWLLALPLLWFRRRAK CCCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA