Click here to switch to the map view.

The map label for this gene is rmf [H]

Identifier: 167624273

GI number: 167624273

Start: 2838277

End: 2838453

Strand: Reverse

Name: rmf [H]

Synonym: Shal_2349

Alternate gene names: 167624273

Gene position: 2838453-2838277 (Counterclockwise)

Preceding gene: 167624274

Following gene: 167624270

Centisome position: 54.3

GC content: 41.24

Gene sequence:

>177_bases
ATGAAAAGACAAAAAAGAGATCGATTAGATAGAGCTTTTTCAAAAGGCTTTCAAGCAGGAATTGGTGGCCGGTCGAAAGA
GATATGTCCGTATTCGACACTTGATTCAAAATCACAATGGCTTGGAGGATGGCGTGAAGGCATTGATGGCAGGCTGAGCG
GCTTATTTAATAAGTAA

Upstream 100 bases:

>100_bases
TGCTAGTGGGTGTTTTTTAGGCATTGATCTCTGCGTTAAAAAGCATTATTTATGGTGCTGAAGCGTTAGCTTCTTTTGTT
ATCTCAGAGAGGATGCTTGC

Downstream 100 bases:

>100_bases
GACTCAGTAACCTATTCTAAGAAAGAGTTTTTGAAGTAAAGAATCATTGAGAAACTTTTTTGCCCTCTAGGATAAAGAGG
GCATTTTTATGCAGTGGCTA

Product: ribosome modulation factor

Products: NA

Alternate protein names: Protein E [H]

Number of amino acids: Translated: 58; Mature: 58

Protein sequence:

>58_residues
MKRQKRDRLDRAFSKGFQAGIGGRSKEICPYSTLDSKSQWLGGWREGIDGRLSGLFNK

Sequences:

>Translated_58_residues
MKRQKRDRLDRAFSKGFQAGIGGRSKEICPYSTLDSKSQWLGGWREGIDGRLSGLFNK
>Mature_58_residues
MKRQKRDRLDRAFSKGFQAGIGGRSKEICPYSTLDSKSQWLGGWREGIDGRLSGLFNK

Specific function: Associates with 70S ribosomes and converts them to a dimeric form (100S ribosomes) which appears during the transition from the exponential growth phase to the stationary phase of E.coli cells [H]

COG id: COG3130

COG function: function code J; Ribosome modulation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787186, Length=52, Percent_Identity=69.2307692307692, Blast_Score=84, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007040
- InterPro:   IPR023200
- ProDom:   PD051650 [H]

Pfam domain/function: PF04957 RMF [H]

EC number: NA

Molecular weight: Translated: 6591; Mature: 6591

Theoretical pI: Translated: 11.06; Mature: 11.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRQKRDRLDRAFSKGFQAGIGGRSKEICPYSTLDSKSQWLGGWREGIDGRLSGLFNK
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCC
>Mature Secondary Structure
MKRQKRDRLDRAFSKGFQAGIGGRSKEICPYSTLDSKSQWLGGWREGIDGRLSGLFNK
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]