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The map label for this gene is ycbB [H]

Identifier: 167624266

GI number: 167624266

Start: 2828185

End: 2829579

Strand: Reverse

Name: ycbB [H]

Synonym: Shal_2342

Alternate gene names: 167624266

Gene position: 2829579-2828185 (Counterclockwise)

Preceding gene: 167624267

Following gene: 167624265

Centisome position: 54.13

GC content: 43.8

Gene sequence:

>1395_bases
ATGCGTTTTTGTAGGTTTATATGCTGGTTTGGTTTGGTTTGCTTGAGTCTTGCTAGCTTGGCGGATGAGCGACAAACACG
TGCGCAAGACATGTTATACCAGCAAGTGTCTTTAATGGCATTAGTCAACAGTGAAAGTAAGTTCGAGCAATACAGGAGCC
TGCTATCACAACACTCGCTTTCACCATCAGAGTTGAAACCCATCGAGCACGAAATCGCGCAATTCTGGTTATCGCGGCAG
ATCCCAATTCGTAATTCATCGACAAATCATCTAGGCGACCCGTTCATTCGAGCGATGGCATTAGAGCCTGAGCTTAATGG
TTACCTTCAAATTCAAAATAGAATTCGTCACTTACACTGGTTAGCTCAGCAGGGGTGGTGGCAACCTATTATTATCGATG
AGTTGATCCGCCCTAGCAAAAAACACCCTAGTATTCCAACTATCGCTAAACGTCTGTGGTTACTTGGAGACGCTGAACGT
TCTGCAACTACATCAACTCTACTTGATGAGAAGCTATCTTCTGCTTTGAAGCGATTCCAACGAAGACATGGTTTACAACC
AGATGCAATAATTGGCCCTGAAACCATGAAATGGCTAAATGTGCAACCTATCGAGCGCGCAAGGATGTTAGCAAATAATT
TTGTGTTGAAAGCGGAGTTTATGGCTCAGCGTGGTGATCAGTTCTTAGTGATTAATATCCCTGCATTTGAAATGGCACTA
TTCAGTAAAGGGAGGGTTGAATTGGAGTCCAGAGTGATCGTCGGTAAGCCCTATAGGCCAACGCCGTTACTTAGCGGTGC
AATATCAAATGTAGTGATCAATCCAAGTTGGCGGGTACCGAAAAAAATCCTTTATAACGACTTACTACCCCACGTTAGAA
AAGATGGTAATTATATCGCGGAAGGAAATTTTGATGTATTTGATCGTAGCAACAATTTGGTTGTGAGGACGGCTCAGCAA
TGGAGCGATCTTGCAAGAGGTCCGTTCCCGTATCGATTTGTACAGCGCCCTGGCTACAACAACACGTTAGGGCGTTATAA
ATTCTACTTTCCCAATGACTTTAGTATCTTCCTTCATGATACATCTAATCCCAAGCTATTCGAGCGCAGCAACCGTGCTC
TATCGTCAGGTTGTATCCGTGTGGAAAATGTCGAGGGACTCGCTAATTGGATGGCGGCCAATTTAGTCAAGGACAAACAG
ACTTGGGTGGATAGGCATGCAGAGAGAACGCGAACGCAGTGGTTTGCTTTAAATTCAACACTAAATGTCCATTTAGTGTA
TTGGACCGCTTGGATCGACGAACACAACCAAGCGCAATTTAGAAATGATATTTACCAATTACAAACATTAAATACTCTTG
AAGACCGCGCCGGTGCTCAAATCAACGACTTATAA

Upstream 100 bases:

>100_bases
TTTCTATCATCAAAAATTTGCTTACCTAATACTCCATCGCGTCATATACAAAACATAATTGTTTGCCATACTTGAAATAG
AGATATTGAAAGGGGCTATG

Downstream 100 bases:

>100_bases
AACAGTTGTCACTAATTTAGCTCGATTGCTTGCTTTCTTTAATTCTTCGGGGTAATTTGCGTGCCAGTTGTTGTAAAAGT
AGTCAGTGGTGAAAGTGTGT

Product: peptidoglycan-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 464

Protein sequence:

>464_residues
MRFCRFICWFGLVCLSLASLADERQTRAQDMLYQQVSLMALVNSESKFEQYRSLLSQHSLSPSELKPIEHEIAQFWLSRQ
IPIRNSSTNHLGDPFIRAMALEPELNGYLQIQNRIRHLHWLAQQGWWQPIIIDELIRPSKKHPSIPTIAKRLWLLGDAER
SATTSTLLDEKLSSALKRFQRRHGLQPDAIIGPETMKWLNVQPIERARMLANNFVLKAEFMAQRGDQFLVINIPAFEMAL
FSKGRVELESRVIVGKPYRPTPLLSGAISNVVINPSWRVPKKILYNDLLPHVRKDGNYIAEGNFDVFDRSNNLVVRTAQQ
WSDLARGPFPYRFVQRPGYNNTLGRYKFYFPNDFSIFLHDTSNPKLFERSNRALSSGCIRVENVEGLANWMAANLVKDKQ
TWVDRHAERTRTQWFALNSTLNVHLVYWTAWIDEHNQAQFRNDIYQLQTLNTLEDRAGAQINDL

Sequences:

>Translated_464_residues
MRFCRFICWFGLVCLSLASLADERQTRAQDMLYQQVSLMALVNSESKFEQYRSLLSQHSLSPSELKPIEHEIAQFWLSRQ
IPIRNSSTNHLGDPFIRAMALEPELNGYLQIQNRIRHLHWLAQQGWWQPIIIDELIRPSKKHPSIPTIAKRLWLLGDAER
SATTSTLLDEKLSSALKRFQRRHGLQPDAIIGPETMKWLNVQPIERARMLANNFVLKAEFMAQRGDQFLVINIPAFEMAL
FSKGRVELESRVIVGKPYRPTPLLSGAISNVVINPSWRVPKKILYNDLLPHVRKDGNYIAEGNFDVFDRSNNLVVRTAQQ
WSDLARGPFPYRFVQRPGYNNTLGRYKFYFPNDFSIFLHDTSNPKLFERSNRALSSGCIRVENVEGLANWMAANLVKDKQ
TWVDRHAERTRTQWFALNSTLNVHLVYWTAWIDEHNQAQFRNDIYQLQTLNTLEDRAGAQINDL
>Mature_464_residues
MRFCRFICWFGLVCLSLASLADERQTRAQDMLYQQVSLMALVNSESKFEQYRSLLSQHSLSPSELKPIEHEIAQFWLSRQ
IPIRNSSTNHLGDPFIRAMALEPELNGYLQIQNRIRHLHWLAQQGWWQPIIIDELIRPSKKHPSIPTIAKRLWLLGDAER
SATTSTLLDEKLSSALKRFQRRHGLQPDAIIGPETMKWLNVQPIERARMLANNFVLKAEFMAQRGDQFLVINIPAFEMAL
FSKGRVELESRVIVGKPYRPTPLLSGAISNVVINPSWRVPKKILYNDLLPHVRKDGNYIAEGNFDVFDRSNNLVVRTAQQ
WSDLARGPFPYRFVQRPGYNNTLGRYKFYFPNDFSIFLHDTSNPKLFERSNRALSSGCIRVENVEGLANWMAANLVKDKQ
TWVDRHAERTRTQWFALNSTLNVHLVYWTAWIDEHNQAQFRNDIYQLQTLNTLEDRAGAQINDL

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=299, Percent_Identity=38.7959866220736, Blast_Score=204, Evalue=1e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 53902; Mature: 53902

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFCRFICWFGLVCLSLASLADERQTRAQDMLYQQVSLMALVNSESKFEQYRSLLSQHSL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
SPSELKPIEHEIAQFWLSRQIPIRNSSTNHLGDPFIRAMALEPELNGYLQIQNRIRHLHW
CHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHEEECCCCCCHHHHHHHHHHHHH
LAQQGWWQPIIIDELIRPSKKHPSIPTIAKRLWLLGDAERSATTSTLLDEKLSSALKRFQ
HHHCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
RRHGLQPDAIIGPETMKWLNVQPIERARMLANNFVLKAEFMAQRGDQFLVINIPAFEMAL
HHCCCCCCCEECCCHHHCCCCCHHHHHHHHHHCCEEEEHHHHHCCCEEEEEECCHHHHHH
FSKGRVELESRVIVGKPYRPTPLLSGAISNVVINPSWRVPKKILYNDLLPHVRKDGNYIA
HCCCCEEEECEEEECCCCCCCHHHHHHHHCEEECCCCCCCHHHHHHHHHHHHHCCCCEEE
EGNFDVFDRSNNLVVRTAQQWSDLARGPFPYRFVQRPGYNNTLGRYKFYFPNDFSIFLHD
CCCCEEEECCCCEEEEEHHHHHHHHCCCCCCHHHCCCCCCCCCCCEEEECCCCEEEEEEE
TSNPKLFERSNRALSSGCIRVENVEGLANWMAANLVKDKQTWVDRHAERTRTQWFALNST
CCCCCHHHHCCHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCE
LNVHLVYWTAWIDEHNQAQFRNDIYQLQTLNTLEDRAGAQINDL
EEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRFCRFICWFGLVCLSLASLADERQTRAQDMLYQQVSLMALVNSESKFEQYRSLLSQHSL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
SPSELKPIEHEIAQFWLSRQIPIRNSSTNHLGDPFIRAMALEPELNGYLQIQNRIRHLHW
CHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHEEECCCCCCHHHHHHHHHHHHH
LAQQGWWQPIIIDELIRPSKKHPSIPTIAKRLWLLGDAERSATTSTLLDEKLSSALKRFQ
HHHCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
RRHGLQPDAIIGPETMKWLNVQPIERARMLANNFVLKAEFMAQRGDQFLVINIPAFEMAL
HHCCCCCCCEECCCHHHCCCCCHHHHHHHHHHCCEEEEHHHHHCCCEEEEEECCHHHHHH
FSKGRVELESRVIVGKPYRPTPLLSGAISNVVINPSWRVPKKILYNDLLPHVRKDGNYIA
HCCCCEEEECEEEECCCCCCCHHHHHHHHCEEECCCCCCCHHHHHHHHHHHHHCCCCEEE
EGNFDVFDRSNNLVVRTAQQWSDLARGPFPYRFVQRPGYNNTLGRYKFYFPNDFSIFLHD
CCCCEEEECCCCEEEEEHHHHHHHHCCCCCCHHHCCCCCCCCCCCEEEECCCCEEEEEEE
TSNPKLFERSNRALSSGCIRVENVEGLANWMAANLVKDKQTWVDRHAERTRTQWFALNST
CCCCCHHHHCCHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCE
LNVHLVYWTAWIDEHNQAQFRNDIYQLQTLNTLEDRAGAQINDL
EEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]