Click here to switch to the map view.

The map label for this gene is spsC [H]

Identifier: 167624238

GI number: 167624238

Start: 2798436

End: 2799620

Strand: Direct

Name: spsC [H]

Synonym: Shal_2314

Alternate gene names: 167624238

Gene position: 2798436-2799620 (Clockwise)

Preceding gene: 167624237

Following gene: 167624239

Centisome position: 53.54

GC content: 45.99

Gene sequence:

>1185_bases
ATGCCTGGTTTTGAATTATTTGGTCCTGAAGAGAAACAAGAAGTCGCGGATGTAATGGAGAATGGCTTTACCTTCCGTTA
TAACTTTGATCATATGCGCAACGACCGCTGGAAAACCCGTGAAATGGAAGCCTTGCTATGCGAAAAGATGAATGCCAAGC
ATGCGCATTTAGTCTCTAGTGGTACAGCAGCCTTACAAACGGCGATGGCTGCAGCTGGTATTGGTGCCGGTGACGAAGTT
ATCGTGCCGCCGTTTACGTTCGTCGCATCAGTTGAAGCCGTATTTATGGCGGGGGCTGTCCCGGTATTTGCCGAGATCGA
TGAAACACTATGTCTTTCTCCAGAAGGTATCGAAGCGGCAATCACACCAAAAACTAAGGCGGTTAACTTAGTTCATATGT
GCGGCTCTATGGCTAAAATGGATGAGATAAAAGCCATCTGTGCCAAGCACAACTTAGTGCTACTCGAAGATGCTTGCCAA
GCCATTGGTGGTAGTTACAGAGGTCAAGCACTCGGTACTATTGGTGATGTTGGCTGTTACTCTTTTGACTCGGTAAAGAC
TATCACCTGTGGTGAGGGCGGCGCCGTCATCACCAACAACGAAACCATCTACAACTATGCCCATATGTTTTCAGATCATG
GCCACGACCATGTGGGTAATGACCGCGGCGCCGAAGGCCACCCAATTATGGGCCTTAACTTCCGTATTTCTGAGATGAAC
TCGGCTATGGGACTGGCGCAACTCCGTAAGCTGGACAAGATCATCGACATTCAACGTAGCAACAAAAAGCTCATTAAAGA
TGCGATGGCTGAGATCCCTGAAGTGTCTTTTCGCGAGATCCCTGATGTTGAAGGTGATTCTGCAGGTTTCCTAACCTTCT
TTATGCCAACTGAAGCGCGTACTATCGAGATCAATAAGAAATTGGCTGAAAATGGCGTCGATGGTTGTTTCTACTGGTAT
ATCAACAACTGGCACTATTTATCAAATTGGAAGCATATCCAGGAGCTTAAATCTCCTTCTGCGCTGCCGATAACACTTAT
TGAAGACAGACCGGATTATACTAACGTGTCTGTGCCTAAGTCTGATGCAATTATGAGTCGTACTATCTCAATGCTTATCA
AGCTGTCATGGACTGAGGAAGAAATTAAGCAGCGCATCGAAAATATTAAACGCGCTTTCGTTTAA

Upstream 100 bases:

>100_bases
GAAAAATCGTAAGAATTCTCGCAGTTACCTCCCCTTCACAGTTATAATCGGTTATTTATTTTTGGCGTAATTTAGCGCAG
TGAACACTAAGGAAATATCC

Downstream 100 bases:

>100_bases
GCAACAACGAGTATCCGTCGCGCCGAGGATTTCGACGCGATGGCACATTTTAAATTAATGGCCCAACGGAGAATGTCGGA
ATGAGTTTTAAGAATTTCAA

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MPGFELFGPEEKQEVADVMENGFTFRYNFDHMRNDRWKTREMEALLCEKMNAKHAHLVSSGTAALQTAMAAAGIGAGDEV
IVPPFTFVASVEAVFMAGAVPVFAEIDETLCLSPEGIEAAITPKTKAVNLVHMCGSMAKMDEIKAICAKHNLVLLEDACQ
AIGGSYRGQALGTIGDVGCYSFDSVKTITCGEGGAVITNNETIYNYAHMFSDHGHDHVGNDRGAEGHPIMGLNFRISEMN
SAMGLAQLRKLDKIIDIQRSNKKLIKDAMAEIPEVSFREIPDVEGDSAGFLTFFMPTEARTIEINKKLAENGVDGCFYWY
INNWHYLSNWKHIQELKSPSALPITLIEDRPDYTNVSVPKSDAIMSRTISMLIKLSWTEEEIKQRIENIKRAFV

Sequences:

>Translated_394_residues
MPGFELFGPEEKQEVADVMENGFTFRYNFDHMRNDRWKTREMEALLCEKMNAKHAHLVSSGTAALQTAMAAAGIGAGDEV
IVPPFTFVASVEAVFMAGAVPVFAEIDETLCLSPEGIEAAITPKTKAVNLVHMCGSMAKMDEIKAICAKHNLVLLEDACQ
AIGGSYRGQALGTIGDVGCYSFDSVKTITCGEGGAVITNNETIYNYAHMFSDHGHDHVGNDRGAEGHPIMGLNFRISEMN
SAMGLAQLRKLDKIIDIQRSNKKLIKDAMAEIPEVSFREIPDVEGDSAGFLTFFMPTEARTIEINKKLAENGVDGCFYWY
INNWHYLSNWKHIQELKSPSALPITLIEDRPDYTNVSVPKSDAIMSRTISMLIKLSWTEEEIKQRIENIKRAFV
>Mature_393_residues
PGFELFGPEEKQEVADVMENGFTFRYNFDHMRNDRWKTREMEALLCEKMNAKHAHLVSSGTAALQTAMAAAGIGAGDEVI
VPPFTFVASVEAVFMAGAVPVFAEIDETLCLSPEGIEAAITPKTKAVNLVHMCGSMAKMDEIKAICAKHNLVLLEDACQA
IGGSYRGQALGTIGDVGCYSFDSVKTITCGEGGAVITNNETIYNYAHMFSDHGHDHVGNDRGAEGHPIMGLNFRISEMNS
AMGLAQLRKLDKIIDIQRSNKKLIKDAMAEIPEVSFREIPDVEGDSAGFLTFFMPTEARTIEINKKLAENGVDGCFYWYI
NNWHYLSNWKHIQELKSPSALPITLIEDRPDYTNVSVPKSDAIMSRTISMLIKLSWTEEEIKQRIENIKRAFV

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=255, Percent_Identity=34.9019607843137, Blast_Score=159, Evalue=4e-40,
Organism=Escherichia coli, GI2367285, Length=250, Percent_Identity=34, Blast_Score=139, Evalue=4e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 43655; Mature: 43524

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGFELFGPEEKQEVADVMENGFTFRYNFDHMRNDRWKTREMEALLCEKMNAKHAHLVSS
CCCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHCCCCCHHHHHHHHHHHHCCCCHHEEECC
GTAALQTAMAAAGIGAGDEVIVPPFTFVASVEAVFMAGAVPVFAEIDETLCLSPEGIEAA
CHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHCCCHHHHHCCHHEECCCCCCEEE
ITPKTKAVNLVHMCGSMAKMDEIKAICAKHNLVLLEDACQAIGGSYRGQALGTIGDVGCY
ECCCHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEEHHHHHHCCCCCCCCCCCCCCCCCCC
SFDSVKTITCGEGGAVITNNETIYNYAHMFSDHGHDHVGNDRGAEGHPIMGLNFRISEMN
CCCCEEEEEECCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHH
SAMGLAQLRKLDKIIDIQRSNKKLIKDAMAEIPEVSFREIPDVEGDSAGFLTFFMPTEAR
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHCCCCCCCCCCEEEEEECCCCE
TIEINKKLAENGVDGCFYWYINNWHYLSNWKHIQELKSPSALPITLIEDRPDYTNVSVPK
EEEECHHHHHCCCCEEEEEEECCEEEECCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC
SDAIMSRTISMLIKLSWTEEEIKQRIENIKRAFV
HHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PGFELFGPEEKQEVADVMENGFTFRYNFDHMRNDRWKTREMEALLCEKMNAKHAHLVSS
CCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHCCCCCHHHHHHHHHHHHCCCCHHEEECC
GTAALQTAMAAAGIGAGDEVIVPPFTFVASVEAVFMAGAVPVFAEIDETLCLSPEGIEAA
CHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHCCCHHHHHCCHHEECCCCCCEEE
ITPKTKAVNLVHMCGSMAKMDEIKAICAKHNLVLLEDACQAIGGSYRGQALGTIGDVGCY
ECCCHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEEHHHHHHCCCCCCCCCCCCCCCCCCC
SFDSVKTITCGEGGAVITNNETIYNYAHMFSDHGHDHVGNDRGAEGHPIMGLNFRISEMN
CCCCEEEEEECCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHH
SAMGLAQLRKLDKIIDIQRSNKKLIKDAMAEIPEVSFREIPDVEGDSAGFLTFFMPTEAR
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHCCCCCCCCCCEEEEEECCCCE
TIEINKKLAENGVDGCFYWYINNWHYLSNWKHIQELKSPSALPITLIEDRPDYTNVSVPK
EEEECHHHHHCCCCEEEEEEECCEEEECCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC
SDAIMSRTISMLIKLSWTEEEIKQRIENIKRAFV
HHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]