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The map label for this gene is glcB [H]

Identifier: 167624220

GI number: 167624220

Start: 2781498

End: 2782013

Strand: Reverse

Name: glcB [H]

Synonym: Shal_2296

Alternate gene names: 167624220

Gene position: 2782013-2781498 (Counterclockwise)

Preceding gene: 167624222

Following gene: 167624219

Centisome position: 53.22

GC content: 40.7

Gene sequence:

>516_bases
ATGAATATATCAACAATCAATAGTACTCAAGTAAATCAAAATAACCATTTCATTGGTGCCAGCCTTGTTGATGTGAATGT
TGTCGAACTGGCAGCTAGCAATACAACGGCCCCCTGTGCAAAAGCATTTTTAGATGCAAAGTTTCCATTGGCTAACGGCT
CACATAAAAATGCCCGTAGCTATGTAGTTTACTATCAGCAACTGTTGATCTTTATGGCCGATGGCACACAGACGGGTTTG
CGTACGCCTAAGCAGTTTGTGGCTCTGAACGGCCATAAGAGTGAGCCTACAGCTATCTTATTAAAAGATAATGGTACTCA
TGTAGAATTAAGTTTTGATAGAAAGAATGAGGCGACCAGTCAGGACTTAGCAAACATTAGGGATATCCAGCTTGAAGGCC
ACGATTATTGGATAAGCCTAATTAATATTGAAGATACAGCCACTACCTCCGTAATGCAAAAACGAACGCGCGAATTTACG
GCAAAAGATGGCAGTGATTATCAGCTTAAAAGCTAA

Upstream 100 bases:

>100_bases
TACACTAGACTACAAATCAAGCAATCGGAAAACGTATTATTTTTTGACTGCGGCTGAAACGGATAACGACCCACAATTTT
AAACGTAAGAGGACAGGGCC

Downstream 100 bases:

>100_bases
CCTGCTCAGAAAGTCTTAATGTTATAACTCTATTAAGCCGCTGCCTTGTGTAGCGGCTTTTTACTATTAGCTTGCGTATT
GACTACTTTGCTCCTATGAT

Product: malate synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MNISTINSTQVNQNNHFIGASLVDVNVVELAASNTTAPCAKAFLDAKFPLANGSHKNARSYVVYYQQLLIFMADGTQTGL
RTPKQFVALNGHKSEPTAILLKDNGTHVELSFDRKNEATSQDLANIRDIQLEGHDYWISLINIEDTATTSVMQKRTREFT
AKDGSDYQLKS

Sequences:

>Translated_171_residues
MNISTINSTQVNQNNHFIGASLVDVNVVELAASNTTAPCAKAFLDAKFPLANGSHKNARSYVVYYQQLLIFMADGTQTGL
RTPKQFVALNGHKSEPTAILLKDNGTHVELSFDRKNEATSQDLANIRDIQLEGHDYWISLINIEDTATTSVMQKRTREFT
AKDGSDYQLKS
>Mature_171_residues
MNISTINSTQVNQNNHFIGASLVDVNVVELAASNTTAPCAKAFLDAKFPLANGSHKNARSYVVYYQQLLIFMADGTQTGL
RTPKQFVALNGHKSEPTAILLKDNGTHVELSFDRKNEATSQDLANIRDIQLEGHDYWISLINIEDTATTSVMQKRTREFT
AKDGSDYQLKS

Specific function: Accounts For Almost The Entire Malate-Synthesizing Activity In Cells Metabolizing Glyoxylate. [C]

COG id: COG2225

COG function: function code C; Malate synthase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the malate synthase family. GlcB subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789348, Length=92, Percent_Identity=42.3913043478261, Blast_Score=81, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011076
- InterPro:   IPR001465
- InterPro:   IPR006253 [H]

Pfam domain/function: PF01274 Malate_synthase [H]

EC number: =2.3.3.9 [H]

Molecular weight: Translated: 18951; Mature: 18951

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNISTINSTQVNQNNHFIGASLVDVNVVELAASNTTAPCAKAFLDAKFPLANGSHKNARS
CCCCCCCCEEECCCCEEEEEEEEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCHH
YVVYYQQLLIFMADGTQTGLRTPKQFVALNGHKSEPTAILLKDNGTHVELSFDRKNEATS
HHHHHHHHHEEEECCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCCCH
QDLANIRDIQLEGHDYWISLINIEDTATTSVMQKRTREFTAKDGSDYQLKS
HHHCCEEEEEECCCEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEECC
>Mature Secondary Structure
MNISTINSTQVNQNNHFIGASLVDVNVVELAASNTTAPCAKAFLDAKFPLANGSHKNARS
CCCCCCCCEEECCCCEEEEEEEEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCHH
YVVYYQQLLIFMADGTQTGLRTPKQFVALNGHKSEPTAILLKDNGTHVELSFDRKNEATS
HHHHHHHHHEEEECCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCCCH
QDLANIRDIQLEGHDYWISLINIEDTATTSVMQKRTREFTAKDGSDYQLKS
HHHCCEEEEEECCCEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA