Click here to switch to the map view.

The map label for this gene is rfaF [H]

Identifier: 167624217

GI number: 167624217

Start: 2778041

End: 2779093

Strand: Direct

Name: rfaF [H]

Synonym: Shal_2293

Alternate gene names: 167624217

Gene position: 2778041-2779093 (Clockwise)

Preceding gene: 167624216

Following gene: 167624218

Centisome position: 53.15

GC content: 45.39

Gene sequence:

>1053_bases
ATGAAGACCAAGACCCGCTTACTTATCTTGTCGGTCTCAGGGATAGGCAATACGATTTTGCAAAGCCCGTTGATTAACGA
AATTTTGGCGAGTGAGCAATATGAAGTCGATATATTATTTGGTAGCAGCACCATGGCTGACGTATACCCTGATGATGACA
GGATTAGCAATATTTACACCTTGCCCTCTAGCCTTGGTGAAAAAATACGCCTAGTTCATACCCTGTATCACAACAGCTAT
ACCACCTCTATCGCTTGTTTTCCATCAAATCGATTCCAGTTCCATCTATTACCTTTTATCATTGGCGTGCGCAAGCGAAT
TGCCCATCGCCCACCAAAAGGTCCGTTGTCTGCGCTAAGCTTTCTTTCGAACCTGCCACTTCAAAGCGATAAAGCATTGC
ATGATGTGCAGCAAAATCTCAACTTACTTTCACAATTACAACTACCGCTTCCTACCCAAGTCTCTCCAATGCAATTGATT
ATCCCTGAGCAAAATAAGCACTATGCGTCACAGCTGCTGCAGAGCTGGGGGGAACCAACAACGCCAATTATTGGGATACA
TGCAGGATGTAAAGCATCAGAGGAGTATAGAAGGTGGCCACAACAGCACTTCGCAGATTTAATCAATCAACTAAACCTAC
AAGGTACGAGATGCTTACTTTTCTCCGGCCCAGATGATAAACAATATGTTGACGGGATTTATGCCCATTTAAGGCAGCCT
CTAATGAATAAAGTGGTGGAAGAGAAATCGATGAGTAACGTCGGTGCCCTCATTGAGCGCTGCCAAGTTTTCCTATCTAC
AGATTCAGGGCTCGGCCATATAGCTAACGCTCTTGGGATCACGACCCTTGCGATTTTTGGCCCTGCGTTACACTCCCGTA
CCGCGCCATATGGGAGTCATGGTCATGTCATTCGCTTAGGCCTCGCGTGCAGCCCTTGTCTAAAATATCCCTTTGAGGGA
ACAAGCTCCAAGATAAACTGCCCCTTTCAATATCGATGCTTAACTCAACTCAGTCCCGATCTTGTCTTGGCCAGACTAAA
CCAACTTTTATGA

Upstream 100 bases:

>100_bases
GGATAGAACTTGAGACGTTACATCAGGCTATTGAAACCAATCGGCTAGAAACACAAAAGCAATTAGCACTCCTGCCAACG
CTTAGAGATTACCTTAATAT

Downstream 100 bases:

>100_bases
TGAAGACTTGGGTTAGGCAAAGCAGACAATACATCCAATATGGCATCGGTCTACTCTCGATGAGCGCAGTCTTTTACTAT
CTGTTTCAACATAAAGACAG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: ADP-heptose--LPS heptosyltransferase II [H]

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MKTKTRLLILSVSGIGNTILQSPLINEILASEQYEVDILFGSSTMADVYPDDDRISNIYTLPSSLGEKIRLVHTLYHNSY
TTSIACFPSNRFQFHLLPFIIGVRKRIAHRPPKGPLSALSFLSNLPLQSDKALHDVQQNLNLLSQLQLPLPTQVSPMQLI
IPEQNKHYASQLLQSWGEPTTPIIGIHAGCKASEEYRRWPQQHFADLINQLNLQGTRCLLFSGPDDKQYVDGIYAHLRQP
LMNKVVEEKSMSNVGALIERCQVFLSTDSGLGHIANALGITTLAIFGPALHSRTAPYGSHGHVIRLGLACSPCLKYPFEG
TSSKINCPFQYRCLTQLSPDLVLARLNQLL

Sequences:

>Translated_350_residues
MKTKTRLLILSVSGIGNTILQSPLINEILASEQYEVDILFGSSTMADVYPDDDRISNIYTLPSSLGEKIRLVHTLYHNSY
TTSIACFPSNRFQFHLLPFIIGVRKRIAHRPPKGPLSALSFLSNLPLQSDKALHDVQQNLNLLSQLQLPLPTQVSPMQLI
IPEQNKHYASQLLQSWGEPTTPIIGIHAGCKASEEYRRWPQQHFADLINQLNLQGTRCLLFSGPDDKQYVDGIYAHLRQP
LMNKVVEEKSMSNVGALIERCQVFLSTDSGLGHIANALGITTLAIFGPALHSRTAPYGSHGHVIRLGLACSPCLKYPFEG
TSSKINCPFQYRCLTQLSPDLVLARLNQLL
>Mature_350_residues
MKTKTRLLILSVSGIGNTILQSPLINEILASEQYEVDILFGSSTMADVYPDDDRISNIYTLPSSLGEKIRLVHTLYHNSY
TTSIACFPSNRFQFHLLPFIIGVRKRIAHRPPKGPLSALSFLSNLPLQSDKALHDVQQNLNLLSQLQLPLPTQVSPMQLI
IPEQNKHYASQLLQSWGEPTTPIIGIHAGCKASEEYRRWPQQHFADLINQLNLQGTRCLLFSGPDDKQYVDGIYAHLRQP
LMNKVVEEKSMSNVGALIERCQVFLSTDSGLGHIANALGITTLAIFGPALHSRTAPYGSHGHVIRLGLACSPCLKYPFEG
TSSKINCPFQYRCLTQLSPDLVLARLNQLL

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790050, Length=294, Percent_Identity=27.2108843537415, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011910 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.4.1.-

Molecular weight: Translated: 38950; Mature: 38950

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTKTRLLILSVSGIGNTILQSPLINEILASEQYEVDILFGSSTMADVYPDDDRISNIYT
CCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCEEE
LPSSLGEKIRLVHTLYHNSYTTSIACFPSNRFQFHLLPFIIGVRKRIAHRPPKGPLSALS
CHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHCCCCCCHHHHHH
FLSNLPLQSDKALHDVQQNLNLLSQLQLPLPTQVSPMQLIIPEQNKHYASQLLQSWGEPT
HHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCC
TPIIGIHAGCKASEEYRRWPQQHFADLINQLNLQGTRCLLFSGPDDKQYVDGIYAHLRQP
CCEEEEECCCCCCHHHHHCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
LMNKVVEEKSMSNVGALIERCQVFLSTDSGLGHIANALGITTLAIFGPALHSRTAPYGSH
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GHVIRLGLACSPCLKYPFEGTSSKINCPFQYRCLTQLSPDLVLARLNQLL
CCEEEEECCCCHHHCCCCCCCCCEECCCHHHHHHHHCCHHHHHHHHHHCC
>Mature Secondary Structure
MKTKTRLLILSVSGIGNTILQSPLINEILASEQYEVDILFGSSTMADVYPDDDRISNIYT
CCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCEEE
LPSSLGEKIRLVHTLYHNSYTTSIACFPSNRFQFHLLPFIIGVRKRIAHRPPKGPLSALS
CHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHCCCCCCHHHHHH
FLSNLPLQSDKALHDVQQNLNLLSQLQLPLPTQVSPMQLIIPEQNKHYASQLLQSWGEPT
HHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCC
TPIIGIHAGCKASEEYRRWPQQHFADLINQLNLQGTRCLLFSGPDDKQYVDGIYAHLRQP
CCEEEEECCCCCCHHHHHCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
LMNKVVEEKSMSNVGALIERCQVFLSTDSGLGHIANALGITTLAIFGPALHSRTAPYGSH
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GHVIRLGLACSPCLKYPFEGTSSKINCPFQYRCLTQLSPDLVLARLNQLL
CCEEEEECCCCHHHCCCCCCCCCEECCCHHHHHHHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2198271; 8478319 [H]