| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is adhE [H]
Identifier: 167624174
GI number: 167624174
Start: 2725691
End: 2728306
Strand: Direct
Name: adhE [H]
Synonym: Shal_2250
Alternate gene names: 167624174
Gene position: 2725691-2728306 (Clockwise)
Preceding gene: 167624172
Following gene: 167624177
Centisome position: 52.15
GC content: 46.41
Gene sequence:
>2616_bases ATGACAGTATCAAATGAGCAAGAACTCAATCTCCTAGTAGACAGAGTGCGAACGGCGCAACAGACGTTCGCTAACTACTC TCAGGAACAAGTCGATAAGATTTTCAGAGCCGCAGCCCTCGCCGCTGCCGATGCGCGGATCTCACTTGCTAAGATGGCCG CCAATGAAACTAAAATGGGCGTCATCGAAGATAAGGTGATTAAAAATCACTTTGCCTCAGAATATATCTACAACAAATAT AAAGATGAAAAAACCTGCGGGATCCTATCTGAAGATCCCACATTTGGAACCATCACCATCGCCGAGCCTGTCGGCATTAT CTGTGGCATAGTGCCAACCACTAACCCTACATCTACAGCAATCTTTAAGGCTCTGATTAGCCTTAAGACTCGAAACGGTA TTATTTTCTCCCCCCACCCAAGAGCTAAAGAGTCGACGACAACTGCCGCTCGTATCGTATTGGAAGCAGCCGTTGCTGCA GGAGCCCCAAAAGACATTATTGGCTGGATAGATGAGCCATCAGTCGCATTATCCAATCAATTAATGACCCACAAAGATAT TAATCTCATTCTTGCTACTGGCGGGCCGGGAATGGTAAAAGCCGCCTACTCTTCAGGTAAACCAGCTATTGGCGTCGGCG CAGGTAATACACCAATTGTTATTGATGAAAGCGCAGATATAAAACGCGCCGTTAGCTCTATATTGATGTCAAAAACCTTC GATAACGGCGTTGTCTGTGCATCTGAACAAGCTGTTGTTATCGTAGATGAGGTTTACGAGGCGGTTAAAGCGCGTTTTGC AAGCCACGGCGGCTACATTTTAAGCCCTGACGAAACTGCTGCAATGCAAAATGTTATTTTAAAAAATGGCGGGCTTAATG CCGATATCGTCGGTCAAAGCGCCGCAAGCATTGCCAAGATGGCCGGAATAGAGGTACACCACACAACTAAAGTGCTGATC GGTGAGGTGTCCGATATTGATGAAGCCGAAGCCTTCGCCCATGAAAAACTCTCACCGTTGCTGGCTATGTACCGCGCAGC CGATTTTGACGATGCTGTAGATAAAGCTGAAGCCCTAGTCACGCTGGGTGGTATTGGACATACATCGGGGCTGTATACGG ATCAGGATACTCAAATTGAAAGAGTTAAAGCCTTCGGCTTTCGAATGAAGACCGCGCGTATTCTCATTAACACTCCGGCT TCACAGGGCGGGATTGGCGATCTCTATAACTTCAAGCTCGCTCCGTCGCTAACCTTAGGTTGTGGCTCTTGGGGTGGCAA CTCCATTTCAGAAAATGTCGGTCCGAGCCATTTGATCAATAAGAAAATGGTCGCTAAGAGAGCTGAAAATATGTTGTGGC ACAAACTTCCCTCTTCAATTTATTTCCGTCGTGGTAGCTTACCTATCGCACTAGAGGAGCTCAGCGATAAGAAGCGTGCG CTTATCGTGACTGACAAGTATCTATTTAATAATGGTTACTGCGATGAAACCATCAAGATCTTAAAGAGCCAAGGTCTTGA AACCGAAGTTTTCTATGAAGTAGAAGCCGACCCAACGATGCAAATCGTCAAGCAAGGTGCCAAAGTTGCGCAAAGCTTCC AACCTGACGTTATTATCGCCTTAGGCGGCGGCTCGCCAATGGACGCCGCCAAGATCATCTGGGTGATGTATGAACATCCT GATGTCGATTTCGCCGATTTAGCGCTACGCTTTATGGATATCAGAAAACGTATCTATAAATTCCCAAAACTGGGTAGAAA AGCCAAGATGGTCGCGATACCAACCACATCTGGTACTGGCTCAGAAGTGACTCCATTTGCAGTCGTTACCGATGAACAAA CGGGTATGAAGTACCCCATTGCCGATTATGAGCTAACGCCAAACATGGCGATTGTTGACCCTAATTTAGTCATGAACATG CCAAAGTCACTCACAGCCTTTGGTGGCATAGACGCTGTGACCCATGCATTAGAAGCTTATGTGAGCGTAATGGCCAACGA ATATAGCGATGGCCAAGCATTACAAGCACTAGACTTACTGTTTAAGCATCTTCCAGACGCCTACGAACATGGCGCCAATG CGCCAGTGGCTCGTGAAAAAGTACATAACGGTGCAACCATTGCAGGCATCGCTTTTGCCAATGCTTTCTTGGGTATTTGC CACTCTATGGCTCACAAACTGGGTGCAGAGTTCCATTTAGCCCATGGTTTAGCGAATGCGTTACTTATCAGCAATGTGAT CCGTTTTAACGCAACCGATATGCCCACTAAACAGGCGGCATTTAGCCAATACGATAGACCGAAAGCACTTTGTCGATATG CAAAGATTGCTGAATATTTAAAACTGGAAGGCGCCATAGGCGAAGGCAAAACTGATGCGGAAAAAGTCGAGACACTGCTT AAAAAAATTGATGAACTCAAAGAGACGATTGGCATTCCACGCTCGATTCAAGCCGCAGGCGTCAACGAAGCCGATTTCCT CGCAAAACTCGATGAGTTAGCAGAAGATGCCTTTGATGATCAGTGTACAGGCGCCAATCCTAGATACCCATTAATTGCAG AGATAAAACAGATCCTTTTAGCCAGCTACTATGGAGAAAGCTATCGCGATCAGTAA
Upstream 100 bases:
>100_bases CTCGCCTTTGCGTGTAATTTTTCTTCATCAAATGGATTTTAGAGCACCGGAGAATGTTTAGCCAAATACCGTTTGGCTAA ATTTTTTCAGGATTGCGATT
Downstream 100 bases:
>100_bases ACCATTTTAGTCATTAAAAAGCCCTAGCCTTCGGTTAGGGCTTTTTGCTGTGCCTATTACTATCACCCGTAACACATAAA GCGACTAAGACTGAAGCTTG
Product: bifunctional acetaldehyde-CoA/alcohol dehydrogenase
Products: NA
Alternate protein names: Alcohol dehydrogenase; ADH; Acetaldehyde dehydrogenase [acetylating]; ACDH; Pyruvate-formate-lyase deactivase; PFL deactivase [H]
Number of amino acids: Translated: 871; Mature: 870
Protein sequence:
>871_residues MTVSNEQELNLLVDRVRTAQQTFANYSQEQVDKIFRAAALAAADARISLAKMAANETKMGVIEDKVIKNHFASEYIYNKY KDEKTCGILSEDPTFGTITIAEPVGIICGIVPTTNPTSTAIFKALISLKTRNGIIFSPHPRAKESTTTAARIVLEAAVAA GAPKDIIGWIDEPSVALSNQLMTHKDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPIVIDESADIKRAVSSILMSKTF DNGVVCASEQAVVIVDEVYEAVKARFASHGGYILSPDETAAMQNVILKNGGLNADIVGQSAASIAKMAGIEVHHTTKVLI GEVSDIDEAEAFAHEKLSPLLAMYRAADFDDAVDKAEALVTLGGIGHTSGLYTDQDTQIERVKAFGFRMKTARILINTPA SQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPSHLINKKMVAKRAENMLWHKLPSSIYFRRGSLPIALEELSDKKRA LIVTDKYLFNNGYCDETIKILKSQGLETEVFYEVEADPTMQIVKQGAKVAQSFQPDVIIALGGGSPMDAAKIIWVMYEHP DVDFADLALRFMDIRKRIYKFPKLGRKAKMVAIPTTSGTGSEVTPFAVVTDEQTGMKYPIADYELTPNMAIVDPNLVMNM PKSLTAFGGIDAVTHALEAYVSVMANEYSDGQALQALDLLFKHLPDAYEHGANAPVAREKVHNGATIAGIAFANAFLGIC HSMAHKLGAEFHLAHGLANALLISNVIRFNATDMPTKQAAFSQYDRPKALCRYAKIAEYLKLEGAIGEGKTDAEKVETLL KKIDELKETIGIPRSIQAAGVNEADFLAKLDELAEDAFDDQCTGANPRYPLIAEIKQILLASYYGESYRDQ
Sequences:
>Translated_871_residues MTVSNEQELNLLVDRVRTAQQTFANYSQEQVDKIFRAAALAAADARISLAKMAANETKMGVIEDKVIKNHFASEYIYNKY KDEKTCGILSEDPTFGTITIAEPVGIICGIVPTTNPTSTAIFKALISLKTRNGIIFSPHPRAKESTTTAARIVLEAAVAA GAPKDIIGWIDEPSVALSNQLMTHKDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPIVIDESADIKRAVSSILMSKTF DNGVVCASEQAVVIVDEVYEAVKARFASHGGYILSPDETAAMQNVILKNGGLNADIVGQSAASIAKMAGIEVHHTTKVLI GEVSDIDEAEAFAHEKLSPLLAMYRAADFDDAVDKAEALVTLGGIGHTSGLYTDQDTQIERVKAFGFRMKTARILINTPA SQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPSHLINKKMVAKRAENMLWHKLPSSIYFRRGSLPIALEELSDKKRA LIVTDKYLFNNGYCDETIKILKSQGLETEVFYEVEADPTMQIVKQGAKVAQSFQPDVIIALGGGSPMDAAKIIWVMYEHP DVDFADLALRFMDIRKRIYKFPKLGRKAKMVAIPTTSGTGSEVTPFAVVTDEQTGMKYPIADYELTPNMAIVDPNLVMNM PKSLTAFGGIDAVTHALEAYVSVMANEYSDGQALQALDLLFKHLPDAYEHGANAPVAREKVHNGATIAGIAFANAFLGIC HSMAHKLGAEFHLAHGLANALLISNVIRFNATDMPTKQAAFSQYDRPKALCRYAKIAEYLKLEGAIGEGKTDAEKVETLL KKIDELKETIGIPRSIQAAGVNEADFLAKLDELAEDAFDDQCTGANPRYPLIAEIKQILLASYYGESYRDQ >Mature_870_residues TVSNEQELNLLVDRVRTAQQTFANYSQEQVDKIFRAAALAAADARISLAKMAANETKMGVIEDKVIKNHFASEYIYNKYK DEKTCGILSEDPTFGTITIAEPVGIICGIVPTTNPTSTAIFKALISLKTRNGIIFSPHPRAKESTTTAARIVLEAAVAAG APKDIIGWIDEPSVALSNQLMTHKDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPIVIDESADIKRAVSSILMSKTFD NGVVCASEQAVVIVDEVYEAVKARFASHGGYILSPDETAAMQNVILKNGGLNADIVGQSAASIAKMAGIEVHHTTKVLIG EVSDIDEAEAFAHEKLSPLLAMYRAADFDDAVDKAEALVTLGGIGHTSGLYTDQDTQIERVKAFGFRMKTARILINTPAS QGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPSHLINKKMVAKRAENMLWHKLPSSIYFRRGSLPIALEELSDKKRAL IVTDKYLFNNGYCDETIKILKSQGLETEVFYEVEADPTMQIVKQGAKVAQSFQPDVIIALGGGSPMDAAKIIWVMYEHPD VDFADLALRFMDIRKRIYKFPKLGRKAKMVAIPTTSGTGSEVTPFAVVTDEQTGMKYPIADYELTPNMAIVDPNLVMNMP KSLTAFGGIDAVTHALEAYVSVMANEYSDGQALQALDLLFKHLPDAYEHGANAPVAREKVHNGATIAGIAFANAFLGICH SMAHKLGAEFHLAHGLANALLISNVIRFNATDMPTKQAAFSQYDRPKALCRYAKIAEYLKLEGAIGEGKTDAEKVETLLK KIDELKETIGIPRSIQAAGVNEADFLAKLDELAEDAFDDQCTGANPRYPLIAEIKQILLASYYGESYRDQ
Specific function: This enzyme has three activities:ADH, ACDH, and PFL- deactivase. In aerobic conditions it acts as a hydrogen peroxide scavenger. The PFL deactivase activity catalyzes the quenching of the pyruvate-formate-lyase catalyst in an iron, NAD, and CoA dependent
COG id: COG1012
COG function: function code C; NAD-dependent aldehyde dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the iron- containing alcohol dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI133922590, Length=320, Percent_Identity=27.5, Blast_Score=86, Evalue=2e-16, Organism=Escherichia coli, GI1787493, Length=870, Percent_Identity=75.5172413793103, Blast_Score=1338, Evalue=0.0, Organism=Escherichia coli, GI48994951, Length=413, Percent_Identity=36.0774818401937, Blast_Score=207, Evalue=2e-54, Organism=Escherichia coli, GI1789163, Length=410, Percent_Identity=31.7073170731707, Blast_Score=194, Evalue=3e-50, Organism=Escherichia coli, GI87082107, Length=384, Percent_Identity=30.9895833333333, Blast_Score=178, Evalue=1e-45, Organism=Escherichia coli, GI1788797, Length=372, Percent_Identity=31.1827956989247, Blast_Score=168, Evalue=1e-42, Organism=Escherichia coli, GI1789386, Length=393, Percent_Identity=24.4274809160305, Blast_Score=85, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17537053, Length=282, Percent_Identity=27.6595744680851, Blast_Score=110, Evalue=4e-24, Organism=Saccharomyces cerevisiae, GI6321181, Length=396, Percent_Identity=32.5757575757576, Blast_Score=182, Evalue=1e-46, Organism=Drosophila melanogaster, GI24657991, Length=319, Percent_Identity=26.3322884012539, Blast_Score=90, Evalue=7e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001670 - InterPro: IPR018211 - InterPro: IPR016161 - InterPro: IPR016163 - InterPro: IPR016162 - InterPro: IPR015590 - InterPro: IPR012079 [H]
Pfam domain/function: PF00171 Aldedh; PF00465 Fe-ADH [H]
EC number: =1.1.1.1; =1.2.1.10 [H]
Molecular weight: Translated: 94112; Mature: 93981
Theoretical pI: Translated: 5.75; Mature: 5.75
Prosite motif: PS00913 ADH_IRON_1 ; PS00060 ADH_IRON_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVSNEQELNLLVDRVRTAQQTFANYSQEQVDKIFRAAALAAADARISLAKMAANETKMG CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC VIEDKVIKNHFASEYIYNKYKDEKTCGILSEDPTFGTITIAEPVGIICGIVPTTNPTSTA HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCHHHH IFKALISLKTRNGIIFSPHPRAKESTTTAARIVLEAAVAAGAPKDIIGWIDEPSVALSNQ HHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHH LMTHKDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPIVIDESADIKRAVSSILMSKTF HHEECCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCEEEECCCHHHHHHHHHHHHHCC DNGVVCASEQAVVIVDEVYEAVKARFASHGGYILSPDETAAMQNVILKNGGLNADIVGQS CCCEEEECCCCEEEHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHCCCCCCEECCCH AASIAKMAGIEVHHTTKVLIGEVSDIDEAEAFAHEKLSPLLAMYRAADFDDAVDKAEALV HHHHHHHHCCEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHE TLGGIGHTSGLYTDQDTQIERVKAFGFRMKTARILINTPASQGGIGDLYNFKLAPSLTLG EECCCCCCCCCCCCCCHHHHHHHHHHEEEEEEEEEEECCCCCCCCCCCCEEEECCCEEEE CGSWGGNSISENVGPSHLINKKMVAKRAENMLWHKLPSSIYFRRGSLPIALEELSDKKRA CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCCCCEEHHHCCCCCCE LIVTDKYLFNNGYCDETIKILKSQGLETEVFYEVEADPTMQIVKQGAKVAQSFQPDVIIA EEEEEHHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEE LGGGSPMDAAKIIWVMYEHPDVDFADLALRFMDIRKRIYKFPKLGRKAKMVAIPTTSGTG ECCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC SEVTPFAVVTDEQTGMKYPIADYELTPNMAIVDPNLVMNMPKSLTAFGGIDAVTHALEAY CCCCCEEEEECCCCCCCCCCCCCEECCCEEEECCHHHHCCCHHHHHHCCHHHHHHHHHHH VSVMANEYSDGQALQALDLLFKHLPDAYEHGANAPVAREKVHNGATIAGIAFANAFLGIC HHHHHCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHCCCCEEHHHHHHHHHHHHH HSMAHKLGAEFHLAHGLANALLISNVIRFNATDMPTKQAAFSQYDRPKALCRYAKIAEYL HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH KLEGAIGEGKTDAEKVETLLKKIDELKETIGIPRSIQAAGVNEADFLAKLDELAEDAFDD HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHCCC QCTGANPRYPLIAEIKQILLASYYGESYRDQ CCCCCCCCCCHHHHHHHHHHHHHHCHHCCCC >Mature Secondary Structure TVSNEQELNLLVDRVRTAQQTFANYSQEQVDKIFRAAALAAADARISLAKMAANETKMG CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC VIEDKVIKNHFASEYIYNKYKDEKTCGILSEDPTFGTITIAEPVGIICGIVPTTNPTSTA HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCHHHH IFKALISLKTRNGIIFSPHPRAKESTTTAARIVLEAAVAAGAPKDIIGWIDEPSVALSNQ HHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHH LMTHKDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPIVIDESADIKRAVSSILMSKTF HHEECCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCEEEECCCHHHHHHHHHHHHHCC DNGVVCASEQAVVIVDEVYEAVKARFASHGGYILSPDETAAMQNVILKNGGLNADIVGQS CCCEEEECCCCEEEHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHCCCCCCEECCCH AASIAKMAGIEVHHTTKVLIGEVSDIDEAEAFAHEKLSPLLAMYRAADFDDAVDKAEALV HHHHHHHHCCEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHE TLGGIGHTSGLYTDQDTQIERVKAFGFRMKTARILINTPASQGGIGDLYNFKLAPSLTLG EECCCCCCCCCCCCCCHHHHHHHHHHEEEEEEEEEEECCCCCCCCCCCCEEEECCCEEEE CGSWGGNSISENVGPSHLINKKMVAKRAENMLWHKLPSSIYFRRGSLPIALEELSDKKRA CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCCCCEEHHHCCCCCCE LIVTDKYLFNNGYCDETIKILKSQGLETEVFYEVEADPTMQIVKQGAKVAQSFQPDVIIA EEEEEHHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEE LGGGSPMDAAKIIWVMYEHPDVDFADLALRFMDIRKRIYKFPKLGRKAKMVAIPTTSGTG ECCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC SEVTPFAVVTDEQTGMKYPIADYELTPNMAIVDPNLVMNMPKSLTAFGGIDAVTHALEAY CCCCCEEEEECCCCCCCCCCCCCEECCCEEEECCHHHHCCCHHHHHHCCHHHHHHHHHHH VSVMANEYSDGQALQALDLLFKHLPDAYEHGANAPVAREKVHNGATIAGIAFANAFLGIC HHHHHCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHCCCCEEHHHHHHHHHHHHH HSMAHKLGAEFHLAHGLANALLISNVIRFNATDMPTKQAAFSQYDRPKALCRYAKIAEYL HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH KLEGAIGEGKTDAEKVETLLKKIDELKETIGIPRSIQAAGVNEADFLAKLDELAEDAFDD HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHCCC QCTGANPRYPLIAEIKQILLASYYGESYRDQ CCCCCCCCCCHHHHHHHHHHHHHHCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]