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The map label for this gene is yafD [C]

Identifier: 167624147

GI number: 167624147

Start: 2689906

End: 2690787

Strand: Reverse

Name: yafD [C]

Synonym: Shal_2223

Alternate gene names: 167624147

Gene position: 2690787-2689906 (Counterclockwise)

Preceding gene: 167624150

Following gene: 167624146

Centisome position: 51.48

GC content: 43.31

Gene sequence:

>882_bases
ATGGCGAAAATTATCCGTAAACTCATTTTATTAGCACTTATAGCTGCAGCAGCCGTGGTTGCTTATGTCTATGACGCATC
CGTTATCCCTACAGACGATGTCCTCATTACTAATGACAATAGCCTAGATGTACAGGCGCAATGTATAACATATCCGACCA
AAGAGTCGCTCGACAGGTTTGGTAAGCTCGATATCACCACCTGGAACCTCTATAAGCAGAGTGGTGAGGGGTGGGATGAT
ACCTTAAAGCAACTCGTAGAACGTTCCGATCTGTTGCTGCTTCAAGAGGCTCAGTTAACTAAAGCACTTAACAGCTTTGT
CGAGTCGCAAAAGCTATCTATGCTACTTGCACAGGCGTTTAGCTTTGATGGAGAGCCTGTAGGCGTTATGAACCTGACGC
GAGAGCCTGCACTGAGTAGTTGTGTGTTTAGAAAGGCTGAGCCTTATATCAACTTCCCAAAATCCATGTTGGTGTCCTAT
TATCTACTATCGGATCTAAGCCAACTATTGGTCGTTAATATCCATAGCATTAACTTTACTATTGGTTTAGATGAGTATCT
GGCTCAGTTACGTATCGTCGAAGCCGCGATTCAGGACCATAAAGGCCCGGTTATTTTTGCCGGCGATATGAATACTTGGA
GCGACTCAAGATTTGAGACGATCAAGCAACTGGCTAATCGCACAGGGTTAAAAGAGGCGATCCCCGCTGCTGATTCAAGA
ACCGAGATCTTTGGTCAACATCTCGACCATATCTTTTATAGAGATTTAGAGTTAGTTAAAGCCGAATCAATAATTACCTC
AAGTTCTGATCATAACCCCGTTAAAGCCTATTTTCGCTTAGAGAAAAAGCGTCCTGTAAAGGTCGTAAAATCAGTCAAAT
AG

Upstream 100 bases:

>100_bases
TGAATAATCCCTATATAGAATGATCATGTGATTAAGCGTAATAAGCGATTATAATGAAAAGAATACCTTAAATCTAAGAA
CCGAGCTGAATAAGTCAATT

Downstream 100 bases:

>100_bases
TCATCAGCTGTACAACTAATTCTCACATATGACTATATAAAATTACACAGGATTCAATATGGATAACGCACTGGCGTTAC
TTAATCGTTATTTTGGTTTT

Product: endonuclease/exonuclease/phosphatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MAKIIRKLILLALIAAAAVVAYVYDASVIPTDDVLITNDNSLDVQAQCITYPTKESLDRFGKLDITTWNLYKQSGEGWDD
TLKQLVERSDLLLLQEAQLTKALNSFVESQKLSMLLAQAFSFDGEPVGVMNLTREPALSSCVFRKAEPYINFPKSMLVSY
YLLSDLSQLLVVNIHSINFTIGLDEYLAQLRIVEAAIQDHKGPVIFAGDMNTWSDSRFETIKQLANRTGLKEAIPAADSR
TEIFGQHLDHIFYRDLELVKAESIITSSSDHNPVKAYFRLEKKRPVKVVKSVK

Sequences:

>Translated_293_residues
MAKIIRKLILLALIAAAAVVAYVYDASVIPTDDVLITNDNSLDVQAQCITYPTKESLDRFGKLDITTWNLYKQSGEGWDD
TLKQLVERSDLLLLQEAQLTKALNSFVESQKLSMLLAQAFSFDGEPVGVMNLTREPALSSCVFRKAEPYINFPKSMLVSY
YLLSDLSQLLVVNIHSINFTIGLDEYLAQLRIVEAAIQDHKGPVIFAGDMNTWSDSRFETIKQLANRTGLKEAIPAADSR
TEIFGQHLDHIFYRDLELVKAESIITSSSDHNPVKAYFRLEKKRPVKVVKSVK
>Mature_292_residues
AKIIRKLILLALIAAAAVVAYVYDASVIPTDDVLITNDNSLDVQAQCITYPTKESLDRFGKLDITTWNLYKQSGEGWDDT
LKQLVERSDLLLLQEAQLTKALNSFVESQKLSMLLAQAFSFDGEPVGVMNLTREPALSSCVFRKAEPYINFPKSMLVSYY
LLSDLSQLLVVNIHSINFTIGLDEYLAQLRIVEAAIQDHKGPVIFAGDMNTWSDSRFETIKQLANRTGLKEAIPAADSRT
EIFGQHLDHIFYRDLELVKAESIITSSSDHNPVKAYFRLEKKRPVKVVKSVK

Specific function: Unknown

COG id: COG3021

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0294 family [H]

Homologues:

Organism=Escherichia coli, GI1786403, Length=227, Percent_Identity=38.3259911894273, Blast_Score=165, Evalue=3e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005135
- InterPro:   IPR022958 [H]

Pfam domain/function: PF03372 Exo_endo_phos [H]

EC number: NA

Molecular weight: Translated: 32918; Mature: 32787

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKIIRKLILLALIAAAAVVAYVYDASVIPTDDVLITNDNSLDVQAQCITYPTKESLDRF
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCEEEEEEECCCHHHHHHH
GKLDITTWNLYKQSGEGWDDTLKQLVERSDLLLLQEAQLTKALNSFVESQKLSMLLAQAF
CCCCEEEEHHHHCCCCCHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFDGEPVGVMNLTREPALSSCVFRKAEPYINFPKSMLVSYYLLSDLSQLLVVNIHSINFT
CCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEEEEE
IGLDEYLAQLRIVEAAIQDHKGPVIFAGDMNTWSDSRFETIKQLANRTGLKEAIPAADSR
ECHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCH
TEIFGQHLDHIFYRDLELVKAESIITSSSDHNPVKAYFRLEKKRPVKVVKSVK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHCCC
>Mature Secondary Structure 
AKIIRKLILLALIAAAAVVAYVYDASVIPTDDVLITNDNSLDVQAQCITYPTKESLDRF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCEEEEEEECCCHHHHHHH
GKLDITTWNLYKQSGEGWDDTLKQLVERSDLLLLQEAQLTKALNSFVESQKLSMLLAQAF
CCCCEEEEHHHHCCCCCHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFDGEPVGVMNLTREPALSSCVFRKAEPYINFPKSMLVSYYLLSDLSQLLVVNIHSINFT
CCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEEEEE
IGLDEYLAQLRIVEAAIQDHKGPVIFAGDMNTWSDSRFETIKQLANRTGLKEAIPAADSR
ECHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCH
TEIFGQHLDHIFYRDLELVKAESIITSSSDHNPVKAYFRLEKKRPVKVVKSVK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA