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The map label for this gene is ctaD [H]

Identifier: 167624121

GI number: 167624121

Start: 2661307

End: 2662743

Strand: Direct

Name: ctaD [H]

Synonym: Shal_2197

Alternate gene names: 167624121

Gene position: 2661307-2662743 (Clockwise)

Preceding gene: 167624113

Following gene: 167624122

Centisome position: 50.92

GC content: 45.16

Gene sequence:

>1437_bases
ATGATGAACCATTCCCAGCCTCAAGGCGCTGATTACAACTACACCGTCGTCCGTCAATTCGCTCTAACAACTGTGTTATG
GGGAATTGTTGGCATGTCAGTAGGTGTATTGATTGCAGCCCAGTTGATCTGGCCGCAGCTAAACTTCGAAACCTCATGGT
TAACGTATAGTCGTCTACGACCTCTACATACGAATGCCGTGATTTTCGCGTTTGGTACTTCAGCCCTTTTCGCCACATCC
TATTATATCGTTCAACGCACCTGTCAAACTCGACTATTTGCACCTAAGTTAGCTGCATTTACGTTCTGGGGTTGGCAAGC
CATCATTCTTTCAGCGGCAATTAGTTTGCCACTTGGTATTACCAGTGGTAAAGAATACGCTGAGCTAGAATGGCCAATTG
ATATCGCCATTACCGTCGTATGGGTCTCCTATGCAGTGGTTTTCTTCGGTACCATAATGAAACGAACAACGTCGCATATC
TATGTGGCTAACTGGTTCTTTGGTGCCTTTATTATCACGGTAGCCGTACTTCACATAGTTAACTCTATGGCTGTACCGTT
AACAATGACTAAGTCTTACTCGCTATATAGTGGCGCGGTAGATGCCATGGTCCAGTGGTGGTATGGTCACAATGCGGTAG
GCTTCCTGTTAACTGCAGGTTTCCTAGGTATGATGTACTACTTCGTACCTAAACAAGCTGGCCGTCCAGTTTATTCGTAC
CGTCTATCTATCGTTCACTTCTGGGCACTTGTTGCTTTGTATATCTGGGCTGGTCCTCACCACCTACACTACACAGCTCT
ACCTGACTGGACTCAGTCATTGGGTATGGTGATGTCTCTGATCCTATTCGCTCCGTCTTGGGGTGGTATGATTAACGGTA
TCATGACCCTATCTGGTGCTTGGCATAAGCTTCGTACTGACCCTATCTTGCGTTTCCTTGTTGTTTCATTGTCTTTCTAC
GGTATGTCTACCTTCGAAGGCCCAATGATGGCAATTAAAACGGTTAACGCACTTTCTCATTACACTGACTGGACTGTTGG
ACACGTTCACTCTGGTGCATTGGGTTGGGTTGCTATGGTTTCTATCGGTTCTTTGTATCACTTGATACCAGTTCTGTTTG
GCCACGGCCGTATGTACAGCACAAACCTTATTAATGTTCATTTCTGGTTGGCAACAATCGGTACTGTTCTTTATATCGTT
TCAATGTGGATCTCTGGTGTGATGCAGGGTCTAATGTGGCGCGCAGTTAACTCTGACGGTACATTGACTTATAGCTTTGT
AGAAAGCTTAGAAGCCTCTTACCCGTTCTACTTTGTTCGTTTCTTGGGTGGTGTGTTCTTCCTTACAGGTATGTTCTTAA
TGGCATACAACGTATACCGTACTGTTAAGGCCCCTAAAGATTCTTTGCCAGCAATTGCTGATGCAAAAGCAGCTTAA

Upstream 100 bases:

>100_bases
CTTAATTTCCGATAGGAGACTTAATTTCAGGGTGTCACATAACGGGTAGAGCTCAGGTTCTACACAATAATAAGTATAAG
TAATAAGCAGTGGAAGCAAT

Downstream 100 bases:

>100_bases
GGAGTAGATACGATGAAATTTAATCACGAGATAATTGAGAAAAACATCGGTCTAATGGGGATCCTTACCGTTATCGCAAT
CAGCTTCGGTAGCTTGGTTG

Product: cbb3-type cytochrome c oxidase subunit I

Products: NA

Alternate protein names: Cytochrome BB(3) subunit 1; Cytochrome c oxidase polypeptide I [H]

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MMNHSQPQGADYNYTVVRQFALTTVLWGIVGMSVGVLIAAQLIWPQLNFETSWLTYSRLRPLHTNAVIFAFGTSALFATS
YYIVQRTCQTRLFAPKLAAFTFWGWQAIILSAAISLPLGITSGKEYAELEWPIDIAITVVWVSYAVVFFGTIMKRTTSHI
YVANWFFGAFIITVAVLHIVNSMAVPLTMTKSYSLYSGAVDAMVQWWYGHNAVGFLLTAGFLGMMYYFVPKQAGRPVYSY
RLSIVHFWALVALYIWAGPHHLHYTALPDWTQSLGMVMSLILFAPSWGGMINGIMTLSGAWHKLRTDPILRFLVVSLSFY
GMSTFEGPMMAIKTVNALSHYTDWTVGHVHSGALGWVAMVSIGSLYHLIPVLFGHGRMYSTNLINVHFWLATIGTVLYIV
SMWISGVMQGLMWRAVNSDGTLTYSFVESLEASYPFYFVRFLGGVFFLTGMFLMAYNVYRTVKAPKDSLPAIADAKAA

Sequences:

>Translated_478_residues
MMNHSQPQGADYNYTVVRQFALTTVLWGIVGMSVGVLIAAQLIWPQLNFETSWLTYSRLRPLHTNAVIFAFGTSALFATS
YYIVQRTCQTRLFAPKLAAFTFWGWQAIILSAAISLPLGITSGKEYAELEWPIDIAITVVWVSYAVVFFGTIMKRTTSHI
YVANWFFGAFIITVAVLHIVNSMAVPLTMTKSYSLYSGAVDAMVQWWYGHNAVGFLLTAGFLGMMYYFVPKQAGRPVYSY
RLSIVHFWALVALYIWAGPHHLHYTALPDWTQSLGMVMSLILFAPSWGGMINGIMTLSGAWHKLRTDPILRFLVVSLSFY
GMSTFEGPMMAIKTVNALSHYTDWTVGHVHSGALGWVAMVSIGSLYHLIPVLFGHGRMYSTNLINVHFWLATIGTVLYIV
SMWISGVMQGLMWRAVNSDGTLTYSFVESLEASYPFYFVRFLGGVFFLTGMFLMAYNVYRTVKAPKDSLPAIADAKAA
>Mature_478_residues
MMNHSQPQGADYNYTVVRQFALTTVLWGIVGMSVGVLIAAQLIWPQLNFETSWLTYSRLRPLHTNAVIFAFGTSALFATS
YYIVQRTCQTRLFAPKLAAFTFWGWQAIILSAAISLPLGITSGKEYAELEWPIDIAITVVWVSYAVVFFGTIMKRTTSHI
YVANWFFGAFIITVAVLHIVNSMAVPLTMTKSYSLYSGAVDAMVQWWYGHNAVGFLLTAGFLGMMYYFVPKQAGRPVYSY
RLSIVHFWALVALYIWAGPHHLHYTALPDWTQSLGMVMSLILFAPSWGGMINGIMTLSGAWHKLRTDPILRFLVVSLSFY
GMSTFEGPMMAIKTVNALSHYTDWTVGHVHSGALGWVAMVSIGSLYHLIPVLFGHGRMYSTNLINVHFWLATIGTVLYIV
SMWISGVMQGLMWRAVNSDGTLTYSFVESLEASYPFYFVRFLGGVFFLTGMFLMAYNVYRTVKAPKDSLPAIADAKAA

Specific function: Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. Co I is the catalytic subunit of the enzyme. Electrons originating in cytochrome

COG id: COG3278

COG function: function code O; Cbb3-type cytochrome oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the heme-copper respiratory oxidase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004677
- InterPro:   IPR000883 [H]

Pfam domain/function: PF00115 COX1 [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 53524; Mature: 53524

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS50855 COX1 ; PS00077 COX1_CUB ; PS00599 AA_TRANSFER_CLASS_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNHSQPQGADYNYTVVRQFALTTVLWGIVGMSVGVLIAAQLIWPQLNFETSWLTYSRLR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHCC
PLHTNAVIFAFGTSALFATSYYIVQRTCQTRLFAPKLAAFTFWGWQAIILSAAISLPLGI
CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
TSGKEYAELEWPIDIAITVVWVSYAVVFFGTIMKRTTSHIYVANWFFGAFIITVAVLHIV
CCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHH
NSMAVPLTMTKSYSLYSGAVDAMVQWWYGHNAVGFLLTAGFLGMMYYFVPKQAGRPVYSY
HCCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
RLSIVHFWALVALYIWAGPHHLHYTALPDWTQSLGMVMSLILFAPSWGGMINGIMTLSGA
HHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
WHKLRTDPILRFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTVGHVHSGALGWVAMV
HHHHCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
SIGSLYHLIPVLFGHGRMYSTNLINVHFWLATIGTVLYIVSMWISGVMQGLMWRAVNSDG
HHHHHHHHHHHHHCCCCEEECCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TLTYSFVESLEASYPFYFVRFLGGVFFLTGMFLMAYNVYRTVKAPKDSLPAIADAKAA
CEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MMNHSQPQGADYNYTVVRQFALTTVLWGIVGMSVGVLIAAQLIWPQLNFETSWLTYSRLR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHCC
PLHTNAVIFAFGTSALFATSYYIVQRTCQTRLFAPKLAAFTFWGWQAIILSAAISLPLGI
CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
TSGKEYAELEWPIDIAITVVWVSYAVVFFGTIMKRTTSHIYVANWFFGAFIITVAVLHIV
CCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHH
NSMAVPLTMTKSYSLYSGAVDAMVQWWYGHNAVGFLLTAGFLGMMYYFVPKQAGRPVYSY
HCCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
RLSIVHFWALVALYIWAGPHHLHYTALPDWTQSLGMVMSLILFAPSWGGMINGIMTLSGA
HHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
WHKLRTDPILRFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTVGHVHSGALGWVAMV
HHHHCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
SIGSLYHLIPVLFGHGRMYSTNLINVHFWLATIGTVLYIVSMWISGVMQGLMWRAVNSDG
HHHHHHHHHHHHHCCCCEEECCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TLTYSFVESLEASYPFYFVRFLGGVFFLTGMFLMAYNVYRTVKAPKDSLPAIADAKAA
CEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7891558 [H]