| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624044
Identifier: 167624044
GI number: 167624044
Start: 2554353
End: 2554979
Strand: Direct
Name: 167624044
Synonym: Shal_2120
Alternate gene names: NA
Gene position: 2554353-2554979 (Clockwise)
Preceding gene: 167624043
Following gene: 167624045
Centisome position: 48.87
GC content: 42.26
Gene sequence:
>627_bases ATGACGGATTCTATAGAAAAACGAATTGATCGTCTTGAATCAATAGAAGAAATTCGCCAGTTAGCCGGGAAATATTCTTT GTCTTTAGATATGCGAGATCTTGATGCTCATGTTGGTTTATTCGCTGAAGATATTCGCGTTGGCAGAGAAAAAGTCGGTA GAGCTCATTTAAAAAGTTGGGTTGATAGCACGCTGAGGGATCAGTTTACTGGGACTTCACATCATATTGGTCAACATATC ATTGAATTTATTGATGAAGATCATGCTATCGGAGTTGTCTACTCTAAAAACGAACATGAAACTGGCACCGAATGGGTTTT GATGCAGATGCTTTACTGGGACGATTATGAGCGAATTGAGGGCAGATGGTATTTCAGGCGTAGATTGCCTTGTTATTGGT ACGCTTCAGATCAAAATAAACCGCCAATCGGCGATACGAAGATGCGTTGGCCTGGCAAAACCTGTTATTCAGGGACCTTT CATGACCTATTCCCGAGCTGGAAGGCGTTTTGGTCACAGCGACCTAATACAAGTGAATTGCCTAATGTCGCAATCCCTGC GCCTTTAGAGCAATTTTTAAACATGATGCGTAAAGATACTCCTGCACCCAAGATCCGGGTCAAATAG
Upstream 100 bases:
>100_bases CGCAAAGCTTGCGTCTTTTATTGCCAGTGAAGATGCCTCTTTCATTACCGGGCAAAATTTGGCAGTTAATGGCGGCATGG CATTTTTGTAAGGGATTATC
Downstream 100 bases:
>100_bases TATTTTCTGGCTTATATGAGCAGCTATTACATGCAAATTAGCCTCACCATTAATAAGGACATGATGTGAAAATTAAAAAC CACAGTGGAGTGCCCTTGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 208; Mature: 207
Protein sequence:
>208_residues MTDSIEKRIDRLESIEEIRQLAGKYSLSLDMRDLDAHVGLFAEDIRVGREKVGRAHLKSWVDSTLRDQFTGTSHHIGQHI IEFIDEDHAIGVVYSKNEHETGTEWVLMQMLYWDDYERIEGRWYFRRRLPCYWYASDQNKPPIGDTKMRWPGKTCYSGTF HDLFPSWKAFWSQRPNTSELPNVAIPAPLEQFLNMMRKDTPAPKIRVK
Sequences:
>Translated_208_residues MTDSIEKRIDRLESIEEIRQLAGKYSLSLDMRDLDAHVGLFAEDIRVGREKVGRAHLKSWVDSTLRDQFTGTSHHIGQHI IEFIDEDHAIGVVYSKNEHETGTEWVLMQMLYWDDYERIEGRWYFRRRLPCYWYASDQNKPPIGDTKMRWPGKTCYSGTF HDLFPSWKAFWSQRPNTSELPNVAIPAPLEQFLNMMRKDTPAPKIRVK >Mature_207_residues TDSIEKRIDRLESIEEIRQLAGKYSLSLDMRDLDAHVGLFAEDIRVGREKVGRAHLKSWVDSTLRDQFTGTSHHIGQHII EFIDEDHAIGVVYSKNEHETGTEWVLMQMLYWDDYERIEGRWYFRRRLPCYWYASDQNKPPIGDTKMRWPGKTCYSGTFH DLFPSWKAFWSQRPNTSELPNVAIPAPLEQFLNMMRKDTPAPKIRVK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24533; Mature: 24402
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDSIEKRIDRLESIEEIRQLAGKYSLSLDMRDLDAHVGLFAEDIRVGREKVGRAHLKSW CCCHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VDSTLRDQFTGTSHHIGQHIIEFIDEDHAIGVVYSKNEHETGTEWVLMQMLYWDDYERIE HHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCHHHHC GRWYFRRRLPCYWYASDQNKPPIGDTKMRWPGKTCYSGTFHDLFPSWKAFWSQRPNTSEL CEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC PNVAIPAPLEQFLNMMRKDTPAPKIRVK CCCCCCHHHHHHHHHHHCCCCCCCEECC >Mature Secondary Structure TDSIEKRIDRLESIEEIRQLAGKYSLSLDMRDLDAHVGLFAEDIRVGREKVGRAHLKSW CCHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VDSTLRDQFTGTSHHIGQHIIEFIDEDHAIGVVYSKNEHETGTEWVLMQMLYWDDYERIE HHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCHHHHC GRWYFRRRLPCYWYASDQNKPPIGDTKMRWPGKTCYSGTFHDLFPSWKAFWSQRPNTSEL CEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC PNVAIPAPLEQFLNMMRKDTPAPKIRVK CCCCCCHHHHHHHHHHHCCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA