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The map label for this gene is bcd [H]

Identifier: 167624039

GI number: 167624039

Start: 2547443

End: 2548681

Strand: Direct

Name: bcd [H]

Synonym: Shal_2115

Alternate gene names: 167624039

Gene position: 2547443-2548681 (Clockwise)

Preceding gene: 167624038

Following gene: 167624040

Centisome position: 48.74

GC content: 42.78

Gene sequence:

>1239_bases
ATGAGCGATATGGATTTATTTAAAACTGAGGTTAGACAGTGGTTAGAAGCTAATTGCCCGCATTCACTCAGAACGCCTAC
ACCTGAGAATGAATTAGTTTGGGGTGGCAAAAACCTAAACTTTATGACCCAAGACATGCGTGATTGGTTTGAGCGCATGC
GCGATAAGCGTTGGTTCTGCCCTGGCTGGCCAACTGAGTATGGCGGCGGCGGCTTATCGGCAACAGAAGTCAATATTTTA
GAGAAAGAAATGTTGCGTATGCGTTGTCGTCCACCGCAAATAAATCTAGGGATCTGGATGTTGGGTCCGGTGTTATTAAA
GTATGGTACTGAAGAGCAGAAAAAACGCTTATTACTACCGATGACACAAGGTGAAGTAAGGTGGTGCCAAGGCTTTAGCG
AGCCAAATGCGGGTTCTGATCTTGCCAATATTCGTACTAGTGCCGTTGATATGGGTGATCATTATTTGGTTAACGGCTCC
AAAATTTGGACATCATACGGTGATAAGTCAGATTGGATGTATGCCTTAGTTAGAACCGATAATAATGCCTCAAAACATGG
CGGTATAAGTTTATTAGTACTCGATATGGCGAGTGCAGGGGTGACGCCTAAAGCAATCGATCTGATCAGTGGCAAATCAT
CATTTTGTGAAGTGTTCTTCGATAATGTCAAAGTCCCCAAAGACAATCTTATCGGTGAGGTAAATGGAGGTTGGCCATTA
GCAAAACTATTACTACAGCACGAACGCAGTGCTATGAGTAAGTTTGGTGAATTTAGCTTACCGAATCACTTTCATTTGAA
GTCGTTTGTTAACGATTATATGCCTAAGCCTCATACCACATCTGAAACTGTATTAAATGCACGCACCGTAGCGTGTGATA
TGGAAGAAAGGATCTTTAATTTGACGGTTCAGCGCATGGGGGAGGAAGCTCGTTCAGGAAAAGATGTTTTCTCTACTATG
TCAATTATGAAATATGCCCATAGCGAACAAGAGAAGATTAAGTTTGAGTTGCTTCTCGATGTTATGGGCTACCGAGCACT
CGGCTGGCAGGTAGAAGGTAAAGCTAACGACAGTTTTAGCGACCAAGAACTCAGTGTTACTCGCGGTTGGCTTAATAGCT
TTACTCAAACGATAGCGGGGGGCTCTTCTGAAGTTCAGTTAAATGTTATCGCTAAAAGAGTCCTCAACTTACCTGATAAT
AAAGCGGGATCTTCAGTTAAAAAGGTAACAACATCATGA

Upstream 100 bases:

>100_bases
ACTTTTGGTGGTGGAACGAACGAGATCCAACGTGAGCTAATTGCTCAATTTGGATTAGGTTTACCGCGCGCACGTAACTA
AGGTAAGAAGGATTTGCATC

Downstream 100 bases:

>100_bases
AGCTAATCTATAACGAAGATGAACGTATGTTGGCCGACATAGCCACAGAATTTTTAGAGTCTAAAAGCCCTGTTGCCGCT
AAACGTGCCCTACGAGATCA

Product: acyl-CoA dehydrogenase domain-containing protein

Products: NA

Alternate protein names: Butyryl-CoA dehydrogenase; SCAD [H]

Number of amino acids: Translated: 412; Mature: 411

Protein sequence:

>412_residues
MSDMDLFKTEVRQWLEANCPHSLRTPTPENELVWGGKNLNFMTQDMRDWFERMRDKRWFCPGWPTEYGGGGLSATEVNIL
EKEMLRMRCRPPQINLGIWMLGPVLLKYGTEEQKKRLLLPMTQGEVRWCQGFSEPNAGSDLANIRTSAVDMGDHYLVNGS
KIWTSYGDKSDWMYALVRTDNNASKHGGISLLVLDMASAGVTPKAIDLISGKSSFCEVFFDNVKVPKDNLIGEVNGGWPL
AKLLLQHERSAMSKFGEFSLPNHFHLKSFVNDYMPKPHTTSETVLNARTVACDMEERIFNLTVQRMGEEARSGKDVFSTM
SIMKYAHSEQEKIKFELLLDVMGYRALGWQVEGKANDSFSDQELSVTRGWLNSFTQTIAGGSSEVQLNVIAKRVLNLPDN
KAGSSVKKVTTS

Sequences:

>Translated_412_residues
MSDMDLFKTEVRQWLEANCPHSLRTPTPENELVWGGKNLNFMTQDMRDWFERMRDKRWFCPGWPTEYGGGGLSATEVNIL
EKEMLRMRCRPPQINLGIWMLGPVLLKYGTEEQKKRLLLPMTQGEVRWCQGFSEPNAGSDLANIRTSAVDMGDHYLVNGS
KIWTSYGDKSDWMYALVRTDNNASKHGGISLLVLDMASAGVTPKAIDLISGKSSFCEVFFDNVKVPKDNLIGEVNGGWPL
AKLLLQHERSAMSKFGEFSLPNHFHLKSFVNDYMPKPHTTSETVLNARTVACDMEERIFNLTVQRMGEEARSGKDVFSTM
SIMKYAHSEQEKIKFELLLDVMGYRALGWQVEGKANDSFSDQELSVTRGWLNSFTQTIAGGSSEVQLNVIAKRVLNLPDN
KAGSSVKKVTTS
>Mature_411_residues
SDMDLFKTEVRQWLEANCPHSLRTPTPENELVWGGKNLNFMTQDMRDWFERMRDKRWFCPGWPTEYGGGGLSATEVNILE
KEMLRMRCRPPQINLGIWMLGPVLLKYGTEEQKKRLLLPMTQGEVRWCQGFSEPNAGSDLANIRTSAVDMGDHYLVNGSK
IWTSYGDKSDWMYALVRTDNNASKHGGISLLVLDMASAGVTPKAIDLISGKSSFCEVFFDNVKVPKDNLIGEVNGGWPLA
KLLLQHERSAMSKFGEFSLPNHFHLKSFVNDYMPKPHTTSETVLNARTVACDMEERIFNLTVQRMGEEARSGKDVFSTMS
IMKYAHSEQEKIKFELLLDVMGYRALGWQVEGKANDSFSDQELSVTRGWLNSFTQTIAGGSSEVQLNVIAKRVLNLPDNK
AGSSVKKVTTS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557235, Length=202, Percent_Identity=34.6534653465347, Blast_Score=96, Evalue=9e-20,
Organism=Homo sapiens, GI76496475, Length=202, Percent_Identity=34.6534653465347, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI21361497, Length=216, Percent_Identity=32.4074074074074, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI226958412, Length=202, Percent_Identity=28.7128712871287, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI226958414, Length=182, Percent_Identity=31.3186813186813, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI4501857, Length=337, Percent_Identity=24.0356083086053, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI4501859, Length=344, Percent_Identity=25.8720930232558, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI4557231, Length=180, Percent_Identity=32.2222222222222, Blast_Score=85, Evalue=2e-16,
Organism=Homo sapiens, GI187960098, Length=180, Percent_Identity=32.2222222222222, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI4557233, Length=191, Percent_Identity=31.413612565445, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI211971008, Length=146, Percent_Identity=31.5068493150685, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI48976061, Length=146, Percent_Identity=31.5068493150685, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI7656849, Length=184, Percent_Identity=30.9782608695652, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI38505218, Length=143, Percent_Identity=36.3636363636364, Blast_Score=71, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17551932, Length=208, Percent_Identity=31.25, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17505929, Length=195, Percent_Identity=30.2564102564103, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17534899, Length=183, Percent_Identity=32.7868852459016, Blast_Score=99, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17569725, Length=189, Percent_Identity=30.6878306878307, Blast_Score=90, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17506239, Length=196, Percent_Identity=32.1428571428571, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI32563615, Length=196, Percent_Identity=32.1428571428571, Blast_Score=85, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17538396, Length=215, Percent_Identity=27.4418604651163, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17508101, Length=184, Percent_Identity=29.3478260869565, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17533517, Length=190, Percent_Identity=32.6315789473684, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17570075, Length=343, Percent_Identity=23.3236151603499, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI71990804, Length=181, Percent_Identity=28.1767955801105, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71985192, Length=153, Percent_Identity=32.6797385620915, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71985184, Length=153, Percent_Identity=32.6797385620915, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17562446, Length=184, Percent_Identity=30.4347826086957, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71982178, Length=190, Percent_Identity=27.3684210526316, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17534353, Length=182, Percent_Identity=29.1208791208791, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI21356377, Length=353, Percent_Identity=26.3456090651558, Blast_Score=99, Evalue=6e-21,
Organism=Drosophila melanogaster, GI281363737, Length=206, Percent_Identity=31.5533980582524, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI21355753, Length=219, Percent_Identity=30.1369863013699, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24666513, Length=192, Percent_Identity=27.0833333333333, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24646207, Length=180, Percent_Identity=31.1111111111111, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24660351, Length=180, Percent_Identity=32.7777777777778, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: =1.3.99.2 [H]

Molecular weight: Translated: 46460; Mature: 46328

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDMDLFKTEVRQWLEANCPHSLRTPTPENELVWGGKNLNFMTQDMRDWFERMRDKRWFC
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCEEC
PGWPTEYGGGGLSATEVNILEKEMLRMRCRPPQINLGIWMLGPVLLKYGTEEQKKRLLLP
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCHHHCCEEEE
MTQGEVRWCQGFSEPNAGSDLANIRTSAVDMGDHYLVNGSKIWTSYGDKSDWMYALVRTD
CCCCCHHHHCCCCCCCCCCHHHHHHHHHEECCCEEEECCCEEEECCCCCCCEEEEEEEEC
NNASKHGGISLLVLDMASAGVTPKAIDLISGKSSFCEVFFDNVKVPKDNLIGEVNGGWPL
CCCCCCCCEEEEEEEHHCCCCCHHHHHHHCCCHHHHHHHHCCCCCCHHHCCEECCCCCHH
AKLLLQHERSAMSKFGEFSLPNHFHLKSFVNDYMPKPHTTSETVLNARTVACDMEERIFN
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHEEECHHHHHHH
LTVQRMGEEARSGKDVFSTMSIMKYAHSEQEKIKFELLLDVMGYRALGWQVEGKANDSFS
HHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHCCEEEECCCCCCCC
DQELSVTRGWLNSFTQTIAGGSSEVQLNVIAKRVLNLPDNKAGSSVKKVTTS
CCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCCCCCHHHCCCC
>Mature Secondary Structure 
SDMDLFKTEVRQWLEANCPHSLRTPTPENELVWGGKNLNFMTQDMRDWFERMRDKRWFC
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCEEC
PGWPTEYGGGGLSATEVNILEKEMLRMRCRPPQINLGIWMLGPVLLKYGTEEQKKRLLLP
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCHHHCCEEEE
MTQGEVRWCQGFSEPNAGSDLANIRTSAVDMGDHYLVNGSKIWTSYGDKSDWMYALVRTD
CCCCCHHHHCCCCCCCCCCHHHHHHHHHEECCCEEEECCCEEEECCCCCCCEEEEEEEEC
NNASKHGGISLLVLDMASAGVTPKAIDLISGKSSFCEVFFDNVKVPKDNLIGEVNGGWPL
CCCCCCCCEEEEEEEHHCCCCCHHHHHHHCCCHHHHHHHHCCCCCCHHHCCEECCCCCHH
AKLLLQHERSAMSKFGEFSLPNHFHLKSFVNDYMPKPHTTSETVLNARTVACDMEERIFN
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHEEECHHHHHHH
LTVQRMGEEARSGKDVFSTMSIMKYAHSEQEKIKFELLLDVMGYRALGWQVEGKANDSFS
HHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHCCEEEECCCCCCCC
DQELSVTRGWLNSFTQTIAGGSSEVQLNVIAKRVLNLPDNKAGSSVKKVTTS
CCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8655474; 11466286 [H]