BacMap

Definition	Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession	NC_010334
Length	5,226,917

Click here to switch to the map view.

The map label for this gene is fabG [H]

Identifier: 167624033

GI number: 167624033

Start: 2541605

End: 2542375

Strand: Direct

Name: fabG [H]

Synonym: Shal_2109

Alternate gene names: 167624033

Gene position: 2541605-2542375 (Clockwise)

Preceding gene: 167624031

Following gene: 167624034

Centisome position: 48.63

GC content: 46.04

Gene sequence:

>771_bases
ATGCAGATTGATTACCAGAATAAAGTGGTATTGGTGACAGGAGGTACTAAAGGCATCGGTGCGGGGATTGCGACAGAGTT
TCTTGCTGCTGGAGCCAAAGTCATTGTTTGTGGGCGAAGTGAGCCACAAACACTTCCGCGAGATGGCAACAATATTGCGC
AGTTTATTTATGCTGATCTTAAGAAACAAGAGGATATTGAAACCTTATTTGACATCATTGCTACAGAATACCCCCGCCTT
GATGTGGTCATTAATAACGCTGGAGGAAGTCCTTTTGCTCTGGCCGACAAGGCGTCTCCTCGATTTCATGAAAGCATTCT
TCGACTCAATCTTATTGCTCCTTTAAATGTTGCTCAACAAGCTAACTTGGTCATGCAAAATCAAGAGTCTGGCGGCTCGA
TTGTCTTTATCGGCAGTATTAGCGCGCTTCGCGCCTCTCCAGGAACCGCCGCTTATGGGGCGGCAAAAGCCGCTATTTTA
TCTTTAGTTCAGTCTCTTGCAGTGGAATGGGCACCAAAAGTTAAGGTAATGGCTGTGAGCCCTGGCCTGGTTAAAACTGA
GCAATCACACCTTCACTACGGTGATGATGAGGGAATAGCGGCTGTGGCTGAAACGATACCCGCTGGTCGATTAGCGGATC
CAGCTGATATAGGCAAGGCCTGTTTATTTTTAGCCTCAGAAAGCGGTGTTTATGCTAGTGGTTGTAACTTATTACTTAAC
GGAGGCGGCGAGAAGCCTGCGTTTTTAATGGCTTCTAAAAATACTAAATAG

Upstream 100 bases:

>100_bases
AACTTTGCCTAGCTAATGATATTTATATAAGCCTCGGAAAACGGCGGGTAAATTTTAATTTAGGTCGTTACAAATATTAC
TAATGTAAAAGGGTAAAGTA

Downstream 100 bases:

>100_bases
TTAATTTTTAACATTAACTAAATGCTTTGTATGAGCTTAATTGATAGTGAATATACACCAGTTCAACAACATTATTTAAA
AGCATTGAGTACGTAGATAC

Product: short chain dehydrogenase

Products: NA

Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MQIDYQNKVVLVTGGTKGIGAGIATEFLAAGAKVIVCGRSEPQTLPRDGNNIAQFIYADLKKQEDIETLFDIIATEYPRL
DVVINNAGGSPFALADKASPRFHESILRLNLIAPLNVAQQANLVMQNQESGGSIVFIGSISALRASPGTAAYGAAKAAIL
SLVQSLAVEWAPKVKVMAVSPGLVKTEQSHLHYGDDEGIAAVAETIPAGRLADPADIGKACLFLASESGVYASGCNLLLN
GGGEKPAFLMASKNTK

Sequences:

>Translated_256_residues
MQIDYQNKVVLVTGGTKGIGAGIATEFLAAGAKVIVCGRSEPQTLPRDGNNIAQFIYADLKKQEDIETLFDIIATEYPRL
DVVINNAGGSPFALADKASPRFHESILRLNLIAPLNVAQQANLVMQNQESGGSIVFIGSISALRASPGTAAYGAAKAAIL
SLVQSLAVEWAPKVKVMAVSPGLVKTEQSHLHYGDDEGIAAVAETIPAGRLADPADIGKACLFLASESGVYASGCNLLLN
GGGEKPAFLMASKNTK
>Mature_256_residues
MQIDYQNKVVLVTGGTKGIGAGIATEFLAAGAKVIVCGRSEPQTLPRDGNNIAQFIYADLKKQEDIETLFDIIATEYPRL
DVVINNAGGSPFALADKASPRFHESILRLNLIAPLNVAQQANLVMQNQESGGSIVFIGSISALRASPGTAAYGAAKAAIL
SLVQSLAVEWAPKVKVMAVSPGLVKTEQSHLHYGDDEGIAAVAETIPAGRLADPADIGKACLFLASESGVYASGCNLLLN
GGGEKPAFLMASKNTK

Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=245, Percent_Identity=32.2448979591837, Blast_Score=114, Evalue=6e-26,
Organism=Homo sapiens, GI126723750, Length=248, Percent_Identity=30.6451612903226, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI59889578, Length=241, Percent_Identity=30.2904564315353, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI19923817, Length=251, Percent_Identity=26.6932270916335, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI40254992, Length=241, Percent_Identity=27.8008298755187, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI5031737, Length=243, Percent_Identity=28.3950617283951, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI109715829, Length=239, Percent_Identity=28.0334728033473, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI10190704, Length=248, Percent_Identity=26.6129032258064, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=28.6290322580645, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI33667109, Length=193, Percent_Identity=30.0518134715026, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI126723191, Length=175, Percent_Identity=32, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=26.3565891472868, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI4758504, Length=230, Percent_Identity=28.695652173913, Blast_Score=66, Evalue=2e-11,
Organism=Escherichia coli, GI1787335, Length=243, Percent_Identity=30.4526748971193, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1789208, Length=241, Percent_Identity=28.6307053941909, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI87082100, Length=267, Percent_Identity=31.4606741573034, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=31.2252964426877, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787526, Length=238, Percent_Identity=27.7310924369748, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=27.2357723577236, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=26.3157894736842, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1787820, Length=231, Percent_Identity=30.7359307359307, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787905, Length=260, Percent_Identity=28.4615384615385, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=26.4227642276423, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082160, Length=242, Percent_Identity=23.9669421487603, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI2367365, Length=188, Percent_Identity=27.1276595744681, Blast_Score=65, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=29.4820717131474, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17560676, Length=244, Percent_Identity=29.5081967213115, Blast_Score=100, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI115534694, Length=245, Percent_Identity=27.7551020408163, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17536025, Length=248, Percent_Identity=27.4193548387097, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=30.3030303030303, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17559104, Length=267, Percent_Identity=29.2134831460674, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17562904, Length=263, Percent_Identity=29.6577946768061, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17536651, Length=249, Percent_Identity=26.9076305220884, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=28.0487804878049, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=28.7878787878788, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17560220, Length=267, Percent_Identity=28.4644194756554, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=267, Percent_Identity=29.5880149812734, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71997402, Length=191, Percent_Identity=29.3193717277487, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=268, Percent_Identity=29.1044776119403, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17562906, Length=267, Percent_Identity=28.0898876404494, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17561272, Length=232, Percent_Identity=25.8620689655172, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=270, Percent_Identity=28.1481481481481, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17531453, Length=262, Percent_Identity=27.8625954198473, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI25147288, Length=241, Percent_Identity=25.7261410788382, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=29.6577946768061, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17555612, Length=226, Percent_Identity=26.9911504424779, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17570069, Length=191, Percent_Identity=27.2251308900524, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=26.3157894736842, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17560150, Length=267, Percent_Identity=25.8426966292135, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17538182, Length=257, Percent_Identity=26.0700389105058, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=248, Percent_Identity=25, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=250, Percent_Identity=27.2, Blast_Score=79, Evalue=7e-16,
Organism=Saccharomyces cerevisiae, GI6323882, Length=208, Percent_Identity=31.25, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6322067, Length=186, Percent_Identity=30.1075268817204, Blast_Score=67, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6322227, Length=192, Percent_Identity=26.5625, Blast_Score=62, Evalue=8e-11,
Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=29.7619047619048, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=27.6, Blast_Score=95, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=30.3643724696356, Blast_Score=92, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24644339, Length=253, Percent_Identity=28.0632411067194, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI21355319, Length=242, Percent_Identity=26.8595041322314, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI23397609, Length=253, Percent_Identity=30.8300395256917, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI116007236, Length=205, Percent_Identity=29.2682926829268, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24641232, Length=200, Percent_Identity=29, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24644337, Length=252, Percent_Identity=30.1587301587302, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI281364494, Length=241, Percent_Identity=26.5560165975104, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21358495, Length=193, Percent_Identity=29.5336787564767, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24639444, Length=241, Percent_Identity=26.1410788381743, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI116007234, Length=199, Percent_Identity=24.1206030150754, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI28571387, Length=202, Percent_Identity=27.7227722772277, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI17737361, Length=201, Percent_Identity=26.3681592039801, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI116007238, Length=202, Percent_Identity=27.2277227722772, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011284
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.100 [H]

Molecular weight: Translated: 26694; Mature: 26694

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIDYQNKVVLVTGGTKGIGAGIATEFLAAGAKVIVCGRSEPQTLPRDGNNIAQFIYADL
CCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH
KKQEDIETLFDIIATEYPRLDVVINNAGGSPFALADKASPRFHESILRLNLIAPLNVAQQ
CCCCHHHHHHHHHHCCCCEEEEEEECCCCCCEEECCCCCCHHHHHHHHEEEECCCCHHHH
ANLVMQNQESGGSIVFIGSISALRASPGTAAYGAAKAAILSLVQSLAVEWAPKVKVMAVS
CCEEEEECCCCCCEEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
PGLVKTEQSHLHYGDDEGIAAVAETIPAGRLADPADIGKACLFLASESGVYASGCNLLLN
CCCEECCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHCCEEEEEECCCCEEECCCEEEEE
GGGEKPAFLMASKNTK
CCCCCCEEEEECCCCC
>Mature Secondary Structure
MQIDYQNKVVLVTGGTKGIGAGIATEFLAAGAKVIVCGRSEPQTLPRDGNNIAQFIYADL
CCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH
KKQEDIETLFDIIATEYPRLDVVINNAGGSPFALADKASPRFHESILRLNLIAPLNVAQQ
CCCCHHHHHHHHHHCCCCEEEEEEECCCCCCEEECCCCCCHHHHHHHHEEEECCCCHHHH
ANLVMQNQESGGSIVFIGSISALRASPGTAAYGAAKAAILSLVQSLAVEWAPKVKVMAVS
CCEEEEECCCCCCEEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
PGLVKTEQSHLHYGDDEGIAAVAETIPAGRLADPADIGKACLFLASESGVYASGCNLLLN
CCCEECCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHCCEEEEEECCCCEEECCCEEEEE
GGGEKPAFLMASKNTK
CCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]