| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167623990
Identifier: 167623990
GI number: 167623990
Start: 2487015
End: 2488397
Strand: Direct
Name: 167623990
Synonym: Shal_2064
Alternate gene names: NA
Gene position: 2487015-2488397 (Clockwise)
Preceding gene: 167623986
Following gene: 167623991
Centisome position: 47.58
GC content: 42.08
Gene sequence:
>1383_bases ATGAAAAAACACTTGAAGGCAGAGACAATGAAACGCTTAAAAAACTTCAATAAAACGCTGGTAAGTAGCGCAGTATTATT CGCCACAATGACATTAGTCGGTTGTTCTGCAACGAGTTCTACCGCTATGGATCAAGGTAAGTACGCAGACGGCATTCATG ACGTTTCAGCTAAAGGTAAGAAAGGGAAAATTATCTTAACGATAGAGGTCAAAAATGGTCATATTGTCGATATTAAGACC AAATCTCATAATGAAACCGAATCTCTGTATCTAAACGCCGAGCGTTTACTTTCAAAAATAATCGCAAACAACGGTCACGA AGGCATTGACGCCGTTTCGGGGGCAACTTTTTCCTCTAACGGTATTTTAGAAGCCGTTAACAGTGTCCCTCGCCGAAATG GCAGTCAACCTGCCTATGCTGCCGTTGGCTCAAAGGAGCAATCTGGCGATGAAGATTTCAAGCTTAAGTGGTCAATTCAA CCTCAGCTAGGTTTGCTTAAGGGGGATTATTACTATCAGGAAGCGCGATTCCGTCAAGGCCACATGGGAAGTGTCGCGAT TGTCACCAATAGCAATAACGCCAAAGACGTGATTTTTGCAGAGTTTAATGAAAGTGGACGTCCGAATTACTACACCCGTC TATATCAAGATGTCCCAAAGCGTATGTCTGAATATAACTTCTCAATGGGTAAGAAGAAAGGCACTGCCTGGGTACAATCA TCTTTGACCATGGAAAAGCTTATGGTTGAGCAAGATAAGTTGACGTTCGACTTAAATCCTGATTTTGACCCATCGCTACG CAATAAACTAAAAGAACCTAATCGTCTGAAATATGCCGATATCGATGTGGTTGCCGGTGCATCTAACAGTATCCAGCAAT CTATGGTTCCGCTAACGGCAAAAATTCATGCTCAAATAAACGGCGATGGTACCAAGCAAAGATTCTATCAACATGCTGAA AAGCTCAATGATGCTAAAGGCAACTGGACGGGGATTACTGCCATGCTGCGTATCGTTGTCGATACCGATACGAAGCAAAT TGTGAAAGCCCACTATGATGAGATCTTTGCCGATGAGAAGGCCCAAATAAAAGACGCGTCTTTGAAGAAATTCTATCGCC AGTCAAAATATGAATCTATTAACTATGTTGAGCCTGCACGAATTGGCTTCAATGTGATGATAGATGGTTTAAATGCTCAT CTTCAACAAGGTGGATCGCTATTTTTAATCGATGACTTACCAGCAACAGGTGATACCGGAAGTTATGCAGCGACCGGTTT CACTAAGCGCTCAAACTCTTGGGATAGCTATCTGAATCAAGCCGAGATCTTGTACAAAGAGATGCGTCAAGATGGAATGA TTAACCAGCATAATAAAAACTAA
Upstream 100 bases:
>100_bases CTGTAGTTTGTGTTAACTGCGTCAAATAAATAAAACTCAAACTAAGATATTGCGGTTTTCCGCAATTGTTAAGAATCTAA AACCTTTTATTCTGGCTTCA
Downstream 100 bases:
>100_bases CCCAGCTATAGATGTCGACTCCTAATCGCCTCTAGAGTGGGGAGTCGTCTGTCTTTCAAATGAATAAATAATTAAGAGAG AAGATGATGAAAATAGTTAA
Product: FMN-binding domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 460; Mature: 460
Protein sequence:
>460_residues MKKHLKAETMKRLKNFNKTLVSSAVLFATMTLVGCSATSSTAMDQGKYADGIHDVSAKGKKGKIILTIEVKNGHIVDIKT KSHNETESLYLNAERLLSKIIANNGHEGIDAVSGATFSSNGILEAVNSVPRRNGSQPAYAAVGSKEQSGDEDFKLKWSIQ PQLGLLKGDYYYQEARFRQGHMGSVAIVTNSNNAKDVIFAEFNESGRPNYYTRLYQDVPKRMSEYNFSMGKKKGTAWVQS SLTMEKLMVEQDKLTFDLNPDFDPSLRNKLKEPNRLKYADIDVVAGASNSIQQSMVPLTAKIHAQINGDGTKQRFYQHAE KLNDAKGNWTGITAMLRIVVDTDTKQIVKAHYDEIFADEKAQIKDASLKKFYRQSKYESINYVEPARIGFNVMIDGLNAH LQQGGSLFLIDDLPATGDTGSYAATGFTKRSNSWDSYLNQAEILYKEMRQDGMINQHNKN
Sequences:
>Translated_460_residues MKKHLKAETMKRLKNFNKTLVSSAVLFATMTLVGCSATSSTAMDQGKYADGIHDVSAKGKKGKIILTIEVKNGHIVDIKT KSHNETESLYLNAERLLSKIIANNGHEGIDAVSGATFSSNGILEAVNSVPRRNGSQPAYAAVGSKEQSGDEDFKLKWSIQ PQLGLLKGDYYYQEARFRQGHMGSVAIVTNSNNAKDVIFAEFNESGRPNYYTRLYQDVPKRMSEYNFSMGKKKGTAWVQS SLTMEKLMVEQDKLTFDLNPDFDPSLRNKLKEPNRLKYADIDVVAGASNSIQQSMVPLTAKIHAQINGDGTKQRFYQHAE KLNDAKGNWTGITAMLRIVVDTDTKQIVKAHYDEIFADEKAQIKDASLKKFYRQSKYESINYVEPARIGFNVMIDGLNAH LQQGGSLFLIDDLPATGDTGSYAATGFTKRSNSWDSYLNQAEILYKEMRQDGMINQHNKN >Mature_460_residues MKKHLKAETMKRLKNFNKTLVSSAVLFATMTLVGCSATSSTAMDQGKYADGIHDVSAKGKKGKIILTIEVKNGHIVDIKT KSHNETESLYLNAERLLSKIIANNGHEGIDAVSGATFSSNGILEAVNSVPRRNGSQPAYAAVGSKEQSGDEDFKLKWSIQ PQLGLLKGDYYYQEARFRQGHMGSVAIVTNSNNAKDVIFAEFNESGRPNYYTRLYQDVPKRMSEYNFSMGKKKGTAWVQS SLTMEKLMVEQDKLTFDLNPDFDPSLRNKLKEPNRLKYADIDVVAGASNSIQQSMVPLTAKIHAQINGDGTKQRFYQHAE KLNDAKGNWTGITAMLRIVVDTDTKQIVKAHYDEIFADEKAQIKDASLKKFYRQSKYESINYVEPARIGFNVMIDGLNAH LQQGGSLFLIDDLPATGDTGSYAATGFTKRSNSWDSYLNQAEILYKEMRQDGMINQHNKN
Specific function: Unknown
COG id: COG3976
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51335; Mature: 51335
Theoretical pI: Translated: 9.53; Mature: 9.53
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKHLKAETMKRLKNFNKTLVSSAVLFATMTLVGCSATSSTAMDQGKYADGIHDVSAKGK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCHHCCCCCC KGKIILTIEVKNGHIVDIKTKSHNETESLYLNAERLLSKIIANNGHEGIDAVSGATFSSN CCEEEEEEEECCCEEEEEEECCCCCCHHEEECHHHHHHHHHHCCCCCCCHHHCCCCCCCC GILEAVNSVPRRNGSQPAYAAVGSKEQSGDEDFKLKWSIQPQLGLLKGDYYYQEARFRQG CHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCEEEEEEECCCCCEEECCHHHHHHHHCCC HMGSVAIVTNSNNAKDVIFAEFNESGRPNYYTRLYQDVPKRMSEYNFSMGKKKGTAWVQS CCCEEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH SLTMEKLMVEQDKLTFDLNPDFDPSLRNKLKEPNRLKYADIDVVAGASNSIQQSMVPLTA HHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCEEEECEEEEECCCCHHHHHHCCEEE KIHAQINGDGTKQRFYQHAEKLNDAKGNWTGITAMLRIVVDTDTKQIVKAHYDEIFADEK EEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHEEEEEEEECCCHHHHHHHHHHHHHCCCH AQIKDASLKKFYRQSKYESINYVEPARIGFNVMIDGLNAHLQQGGSLFLIDDLPATGDTG HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECHHHHHHCCCCEEEEECCCCCCCCC SYAATGFTKRSNSWDSYLNQAEILYKEMRQDGMINQHNKN CEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MKKHLKAETMKRLKNFNKTLVSSAVLFATMTLVGCSATSSTAMDQGKYADGIHDVSAKGK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCHHCCCCCC KGKIILTIEVKNGHIVDIKTKSHNETESLYLNAERLLSKIIANNGHEGIDAVSGATFSSN CCEEEEEEEECCCEEEEEEECCCCCCHHEEECHHHHHHHHHHCCCCCCCHHHCCCCCCCC GILEAVNSVPRRNGSQPAYAAVGSKEQSGDEDFKLKWSIQPQLGLLKGDYYYQEARFRQG CHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCEEEEEEECCCCCEEECCHHHHHHHHCCC HMGSVAIVTNSNNAKDVIFAEFNESGRPNYYTRLYQDVPKRMSEYNFSMGKKKGTAWVQS CCCEEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH SLTMEKLMVEQDKLTFDLNPDFDPSLRNKLKEPNRLKYADIDVVAGASNSIQQSMVPLTA HHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCEEEECEEEEECCCCHHHHHHCCEEE KIHAQINGDGTKQRFYQHAEKLNDAKGNWTGITAMLRIVVDTDTKQIVKAHYDEIFADEK EEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHEEEEEEEECCCHHHHHHHHHHHHHCCCH AQIKDASLKKFYRQSKYESINYVEPARIGFNVMIDGLNAHLQQGGSLFLIDDLPATGDTG HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECHHHHHHCCCCEEEEECCCCCCCCC SYAATGFTKRSNSWDSYLNQAEILYKEMRQDGMINQHNKN CEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA