| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is flp [H]
Identifier: 167623966
GI number: 167623966
Start: 2461611
End: 2462768
Strand: Reverse
Name: flp [H]
Synonym: Shal_2040
Alternate gene names: 167623966
Gene position: 2462768-2461611 (Counterclockwise)
Preceding gene: 167623968
Following gene: 167623964
Centisome position: 47.12
GC content: 42.83
Gene sequence:
>1158_bases ATGTTTTTTAAATCTTTACTCCTGTTCGGTACTTTTTCTATCGGATCATTCTTTCCTGCTCAGCAAGTGCATGCAGCGCA ATCTCAATATGGCGAGCTTGCAAACAGCTTCAAAAAACGCTTTAACCATGAATTAAAAGATAACAAGCTTCCCGGCGGCG CTTTTGTCATTGTTGAAGCGGATTCAGTCTTAAAACTTGGGACTTATGGCAAACGAGTAAAAGGTGGTAGCCAAAATATA GATGCTGACACGGTATTTAGATTAGCGTCTGTCTCTAAAACCTTTGCAGGTACGCTGGCCTCTATGCTCGTTGAAGAGGG AAAACTAGATTGGCAACAACCTATTATTAGTTATTTGCCAGAATTTGCGTTAGCTAAGCAGCAAAATGTAACACAGATTA ACCTAGGCCACATTATTGGTCATAGCACAGGCTTAATGCCAAATAGTTATGACAACCTTATCAATGCCAATGTCAAACTC AGTAAAATTGTCAGTAAATTTGATGAGCTAACCCCCATTTGCAAACCTGGTGTCTGTTATGGCTATCAAAATGTCGCGTT TTCTTTTATCAAAGATGCTATAGAACAACAATCGACTTTCAGCTACGCGAACTTTATACAGCAACGGATTTTCGCACCAT TGAGTATGAGCTCTGCCTCTGTTGGCTACGACGCATTTCTAAATGAAAGCAACCGAGCCGAACCCCACGTCAAAACCAAA TCTGGATTTCAGAAGGTTAAAGTTAAACCTAATTATTATCAACTTGCACCGGCTGCTGGCGTTAATGCCAGCATTAGCGA TCTTTCAAAATGGTTAATGGCGAATTTAGGTCAAAATCCAGACGTGATCTCAGCGAGTATGATAGAGGATCTAACCACAC CGGGCGTTAAGACCACAAAAGAGCTACGCCGTAGAGATTGGCGTCCCTACCTTGACAGTGCCCATTACGGTAAAGGTTGG CGCGTCTATGAGTTCAATGGCCGTCCGCTGATCTACCATGCGGGCTGGGTTGCAGGATATGTTGCTGAAGTATCCTACTC TCCTGAGTTAAATATCGGTATGGCGATGTTACTCAATGGCGAGTCACGAGTAATCGCAAAATTAAGCTCCGAGTTTTGGC GCGATGCATTCAAGCAAGCAGATAAACTCGGTATGTGA
Upstream 100 bases:
>100_bases TAACAAGAACAGCCCCTCATGCATTAAAATGCAACCGTAACGAATTAAACCGCAATAACGATACTAAACAGACCGTATTA ACGGCACATTGGAACTGTAC
Downstream 100 bases:
>100_bases CGTTAAGCATGGGCTATTCGCGGTGACATATCTGTAACCGTTAAATTCGTCTTTAATTAGAAATAAAAAAGGATGCCAAT GGCATCCTTTTTTATTAGAT
Product: beta-lactamase
Products: A Substituted Beta- Amino Acid. [C]
Alternate protein names: FmtA-like protein [H]
Number of amino acids: Translated: 385; Mature: 385
Protein sequence:
>385_residues MFFKSLLLFGTFSIGSFFPAQQVHAAQSQYGELANSFKKRFNHELKDNKLPGGAFVIVEADSVLKLGTYGKRVKGGSQNI DADTVFRLASVSKTFAGTLASMLVEEGKLDWQQPIISYLPEFALAKQQNVTQINLGHIIGHSTGLMPNSYDNLINANVKL SKIVSKFDELTPICKPGVCYGYQNVAFSFIKDAIEQQSTFSYANFIQQRIFAPLSMSSASVGYDAFLNESNRAEPHVKTK SGFQKVKVKPNYYQLAPAAGVNASISDLSKWLMANLGQNPDVISASMIEDLTTPGVKTTKELRRRDWRPYLDSAHYGKGW RVYEFNGRPLIYHAGWVAGYVAEVSYSPELNIGMAMLLNGESRVIAKLSSEFWRDAFKQADKLGM
Sequences:
>Translated_385_residues MFFKSLLLFGTFSIGSFFPAQQVHAAQSQYGELANSFKKRFNHELKDNKLPGGAFVIVEADSVLKLGTYGKRVKGGSQNI DADTVFRLASVSKTFAGTLASMLVEEGKLDWQQPIISYLPEFALAKQQNVTQINLGHIIGHSTGLMPNSYDNLINANVKL SKIVSKFDELTPICKPGVCYGYQNVAFSFIKDAIEQQSTFSYANFIQQRIFAPLSMSSASVGYDAFLNESNRAEPHVKTK SGFQKVKVKPNYYQLAPAAGVNASISDLSKWLMANLGQNPDVISASMIEDLTTPGVKTTKELRRRDWRPYLDSAHYGKGW RVYEFNGRPLIYHAGWVAGYVAEVSYSPELNIGMAMLLNGESRVIAKLSSEFWRDAFKQADKLGM >Mature_385_residues MFFKSLLLFGTFSIGSFFPAQQVHAAQSQYGELANSFKKRFNHELKDNKLPGGAFVIVEADSVLKLGTYGKRVKGGSQNI DADTVFRLASVSKTFAGTLASMLVEEGKLDWQQPIISYLPEFALAKQQNVTQINLGHIIGHSTGLMPNSYDNLINANVKL SKIVSKFDELTPICKPGVCYGYQNVAFSFIKDAIEQQSTFSYANFIQQRIFAPLSMSSASVGYDAFLNESNRAEPHVKTK SGFQKVKVKPNYYQLAPAAGVNASISDLSKWLMANLGQNPDVISASMIEDLTTPGVKTTKELRRRDWRPYLDSAHYGKGW RVYEFNGRPLIYHAGWVAGYVAEVSYSPELNIGMAMLLNGESRVIAKLSSEFWRDAFKQADKLGM
Specific function: Its precise function is unknown. Has no penicillin- binding activity and is not involved in methicillin resistance [H]
COG id: COG1680
COG function: function code V; Beta-lactamase class C and other penicillin binding proteins
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790593, Length=391, Percent_Identity=23.2736572890026, Blast_Score=78, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001466 [H]
Pfam domain/function: PF00144 Beta-lactamase [H]
EC number: 3.5.2.6 [C]
Molecular weight: Translated: 42755; Mature: 42755
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFFKSLLLFGTFSIGSFFPAQQVHAAQSQYGELANSFKKRFNHELKDNKLPGGAFVIVEA CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCEEEEEEC DSVLKLGTYGKRVKGGSQNIDADTVFRLASVSKTFAGTLASMLVEEGKLDWQQPIISYLP CCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCH EFALAKQQNVTQINLGHIIGHSTGLMPNSYDNLINANVKLSKIVSKFDELTPICKPGVCY HHHHHHHCCCCEEEHHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCC GYQNVAFSFIKDAIEQQSTFSYANFIQQRIFAPLSMSSASVGYDAFLNESNRAEPHVKTK CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCC SGFQKVKVKPNYYQLAPAAGVNASISDLSKWLMANLGQNPDVISASMIEDLTTPGVKTTK CCCEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHH ELRRRDWRPYLDSAHYGKGWRVYEFNGRPLIYHAGWVAGYVAEVSYSPELNIGMAMLLNG HHHHCCCCCCCCCCCCCCCEEEEEECCCEEEEECCHHHHHHHHCCCCCCCCCCEEEEECC ESRVIAKLSSEFWRDAFKQADKLGM CHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MFFKSLLLFGTFSIGSFFPAQQVHAAQSQYGELANSFKKRFNHELKDNKLPGGAFVIVEA CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCEEEEEEC DSVLKLGTYGKRVKGGSQNIDADTVFRLASVSKTFAGTLASMLVEEGKLDWQQPIISYLP CCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCH EFALAKQQNVTQINLGHIIGHSTGLMPNSYDNLINANVKLSKIVSKFDELTPICKPGVCY HHHHHHHCCCCEEEHHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCC GYQNVAFSFIKDAIEQQSTFSYANFIQQRIFAPLSMSSASVGYDAFLNESNRAEPHVKTK CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCC SGFQKVKVKPNYYQLAPAAGVNASISDLSKWLMANLGQNPDVISASMIEDLTTPGVKTTK CCCEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHH ELRRRDWRPYLDSAHYGKGWRVYEFNGRPLIYHAGWVAGYVAEVSYSPELNIGMAMLLNG HHHHCCCCCCCCCCCCCCCEEEEEECCCEEEEECCHHHHHHHHCCCCCCCCCCEEEEECC ESRVIAKLSSEFWRDAFKQADKLGM CHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: A Beta-Lactam; H2O [C]
Specific reaction: A Beta-Lactam + H2O = A Substituted Beta- Amino Acid. [C]
General reaction: Carboxylic acid amide hydrolysis [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA