| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is yghU [H]
Identifier: 167623913
GI number: 167623913
Start: 2392284
End: 2392949
Strand: Reverse
Name: yghU [H]
Synonym: Shal_1984
Alternate gene names: 167623913
Gene position: 2392949-2392284 (Counterclockwise)
Preceding gene: 167623914
Following gene: 167623910
Centisome position: 45.78
GC content: 37.84
Gene sequence:
>666_bases ATGTCTGATATTCAACTTTACTCACTAGGCTCACCTAATGGAATTAAAATTCCAATCGCGCTCGAAGAAATGGGAATGAG CTATGATGCCCACACGGTTGATATTTTAAAGGGTGAACAGTTTAGTAAAGAGTTTACAAAGATAAATCCAAACTCAAAGA TACCAGCAATCATTGATACTGAGGGGCCGCAAGGGCAACCTATTTCGATAATGGAATCAGGTGCAATTTTACTATATTTG GCAGAGAAATCAGGAAAGTTAATTCCACAGAACCCAAGACAAAGGTGTGAGACAATTCAGTGGCTTTTCTTTCAGGCAAG CGCTGTTGGGCCAATGTTTGGAGCCTTTGGTCATTTTCATACTTACGGTAAAGAAAATTGTGACCACCCTTACCCTGAAG CAAGATTTGCGAATGAAACCAAGCGTCTACTATCCATTTTAGATGAAAGACTTCAAAATCGTATTTATATTGTTGGTGAT GAATATAGTATCGCTGATATATCTATTTTCCCTTGGGTAATTTGGCTAGATATATTTTATAAGGCTGCTAAACAACTTGA GCTTGGATCATATAAAAATGTAATGGCTTGGGTTGAGCGATGTAGATCAAGACCTGCAACAATAAAAGGCCTTAATGTGT ATGGGTTCAATGAGATAGGCAAATAA
Upstream 100 bases:
>100_bases GAATTCGTCAGATTGCTCAACTCTTATAAATGTATCTAGACTGGTAGGGTAATCTTAGAAAGTAGAAATTAATAAAACGA TATAATTAGGAGGAACTAAG
Downstream 100 bases:
>100_bases AACACTAAATTTTTAAAGTCCCAGACAGATATATAATTGGTATTACAGCATCCTATAATCCTGTTAATAATTTTGTGAAA CTACCTCACAATACATTGAC
Product: glutathione S-transferase domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 221; Mature: 220
Protein sequence:
>221_residues MSDIQLYSLGSPNGIKIPIALEEMGMSYDAHTVDILKGEQFSKEFTKINPNSKIPAIIDTEGPQGQPISIMESGAILLYL AEKSGKLIPQNPRQRCETIQWLFFQASAVGPMFGAFGHFHTYGKENCDHPYPEARFANETKRLLSILDERLQNRIYIVGD EYSIADISIFPWVIWLDIFYKAAKQLELGSYKNVMAWVERCRSRPATIKGLNVYGFNEIGK
Sequences:
>Translated_221_residues MSDIQLYSLGSPNGIKIPIALEEMGMSYDAHTVDILKGEQFSKEFTKINPNSKIPAIIDTEGPQGQPISIMESGAILLYL AEKSGKLIPQNPRQRCETIQWLFFQASAVGPMFGAFGHFHTYGKENCDHPYPEARFANETKRLLSILDERLQNRIYIVGD EYSIADISIFPWVIWLDIFYKAAKQLELGSYKNVMAWVERCRSRPATIKGLNVYGFNEIGK >Mature_220_residues SDIQLYSLGSPNGIKIPIALEEMGMSYDAHTVDILKGEQFSKEFTKINPNSKIPAIIDTEGPQGQPISIMESGAILLYLA EKSGKLIPQNPRQRCETIQWLFFQASAVGPMFGAFGHFHTYGKENCDHPYPEARFANETKRLLSILDERLQNRIYIVGDE YSIADISIFPWVIWLDIFYKAAKQLELGSYKNVMAWVERCRSRPATIKGLNVYGFNEIGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 GST N-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI87082195, Length=216, Percent_Identity=46.2962962962963, Blast_Score=182, Evalue=2e-47, Organism=Escherichia coli, GI1788640, Length=210, Percent_Identity=44.7619047619048, Blast_Score=173, Evalue=8e-45, Organism=Saccharomyces cerevisiae, GI6324100, Length=239, Percent_Identity=28.4518828451883, Blast_Score=98, Evalue=1e-21, Organism=Drosophila melanogaster, GI17864592, Length=207, Percent_Identity=26.5700483091787, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI28571670, Length=183, Percent_Identity=27.8688524590164, Blast_Score=80, Evalue=8e-16, Organism=Drosophila melanogaster, GI45549270, Length=184, Percent_Identity=29.8913043478261, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI17864598, Length=183, Percent_Identity=30.0546448087432, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI85725204, Length=203, Percent_Identity=26.6009852216749, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI17737923, Length=203, Percent_Identity=26.6009852216749, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI20129811, Length=197, Percent_Identity=25.3807106598985, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI17864594, Length=200, Percent_Identity=27, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI24646249, Length=200, Percent_Identity=26.5, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24654979, Length=209, Percent_Identity=25.3588516746411, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI17933730, Length=206, Percent_Identity=24.7572815533981, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI19922526, Length=208, Percent_Identity=27.8846153846154, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24654965, Length=211, Percent_Identity=27.9620853080569, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI24646251, Length=199, Percent_Identity=26.1306532663317, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010987 - InterPro: IPR004045 - InterPro: IPR017933 - InterPro: IPR004046 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00043 GST_C; PF02798 GST_N [H]
EC number: NA
Molecular weight: Translated: 25029; Mature: 24898
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDIQLYSLGSPNGIKIPIALEEMGMSYDAHTVDILKGEQFSKEFTKINPNSKIPAIIDT CCCEEEEECCCCCCEEEEEEHHHHCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEC EGPQGQPISIMESGAILLYLAEKSGKLIPQNPRQRCETIQWLFFQASAVGPMFGAFGHFH CCCCCCCEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH TYGKENCDHPYPEARFANETKRLLSILDERLQNRIYIVGDEYSIADISIFPWVIWLDIFY CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEHHHHHHHHHHHHHH KAAKQLELGSYKNVMAWVERCRSRPATIKGLNVYGFNEIGK HHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC >Mature Secondary Structure SDIQLYSLGSPNGIKIPIALEEMGMSYDAHTVDILKGEQFSKEFTKINPNSKIPAIIDT CCEEEEECCCCCCEEEEEEHHHHCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEC EGPQGQPISIMESGAILLYLAEKSGKLIPQNPRQRCETIQWLFFQASAVGPMFGAFGHFH CCCCCCCEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH TYGKENCDHPYPEARFANETKRLLSILDERLQNRIYIVGDEYSIADISIFPWVIWLDIFY CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEHHHHHHHHHHHHHH KAAKQLELGSYKNVMAWVERCRSRPATIKGLNVYGFNEIGK HHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]