| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167623912
Identifier: 167623912
GI number: 167623912
Start: 2389136
End: 2391577
Strand: Direct
Name: 167623912
Synonym: Shal_1983
Alternate gene names: NA
Gene position: 2389136-2391577 (Clockwise)
Preceding gene: 167623911
Following gene: 167623915
Centisome position: 45.71
GC content: 44.84
Gene sequence:
>2442_bases ATGAAATTATCTAAATCTACACTGGCAATCGCCATGTTTTTAACGTCCGGCACTGTAATGGCTGCTGGCCCACTATACAC AACAGACGGTGCAAACCCTCAGCCTTATAAATGGGACACTTCAGCAGGTTCCATTCCTGTCTATGTCGATGGCGGTGCTG CGTTTACCTTTGATTATGATGGTAGTGTTTTCTTGTCAATTGAACGTGCAAATGAGATCACCCAGTTTGCTTTTGATCAA TGGAACAATGTCGAAACATCAACTTTTGAGGCTAATATTGCTGGTAGTATCGAAGAGCAAGTCGGGATTGCCGATGTGAC AGGCGCAAACGCAGCGCAAATTTATACCGTTGAAAATGGCTATGGTTTTTATGTCTTATATGACACCGACGGCAGTATCT TAGAAGACTTTTTTGGTGTGCCTAAGTCTGCCGTGCTCGGAATTGCTTTCCCTGAGTGGGCTGACGAAAACGGTAATATA ACCGAAGCCACCGCAGTGCTTAATGGCTGGAATGTTTATGTGCAAGATACTAAAGGCGAGCAAGTAGCTGGTGTATTTAC CCATGAATTTGGTCACGCGATTAACTTGTCACACTCTCAGACAAATGGACAATTGGCTTATTTAAGTTGGCCTGGTGCTC CTTTATATCCAGGTGTTGCAGGGTGTGACGTTGAGGCCATTCATGATTTTGAATATCCAGCAGAGTATGGAGGAAACCCT GCCGATCCAGACATTATCGAAACCATGTTCCCTTTTATTCGTCATGATGGTGTGGGTGGTGTCAGTCAAAGTACCGTGAA TGTACTTGATGACCGTGTATCGATATCTAACTTGTACCCAACTGCTGAATATAAGAGTCAGTTTGGCTCAATTGAGGGGA CATTAAGATTAAAGGACGGTCAAACAGAATATAGTGGTATTAATATCATAGCGCGTAATGTCAATGATCCGCTTTTCGAT GCCGTATCTGCGCAATCTGGTAATTTAACTCAGGGTAAGGTGGGGCCTGATGGCTCATTTAAGATCAATGGTCTAACACC TGGGCAAAGCTATGTTTTATATACGGAAGAGATCTACCAAGGGGGATATCCAACTCAACAAACACCTTTGGTGTCTGTTG CAGAATATTGGAATGAGGCCGAAGGTAGTAACCCTGCAGCTGATGATGCCTGTGACGTTACTCCTATCATTGCTGAAGCG GGCAAGACTAAGCAAGCCGACTTAACTTTCAATGGTTACGATGATGGTATCGAATTTAGACCCATCGTGAATGCACACCT TACCGATCTGGCTAAAAATGGCCGCTCTTCAATGGGGGTTATTAACGGGATCGGTTTCACATGGGATGAAAATAAAGATT TTACCATCCTGCCTGATTACATAAGGGTAAATAGCGGCAGGATGAACCGTAATGGTAATAAGTTACTGGTTAATTCAGAC TTAGATGGTAACGGGATCAGTGCTCCAGCAATCTGGACCAAAGCGCATGGTGCTATGTCTTTAGGTGACTTAACCGGCAA TACGTGCGGTGGTTCTGGCATGGAAGGGATGCAAGCTGCTTCAGGTTGGGACATCGATGACGCCGGTAATACCGTTGTTG GATTGGCTTACAAAGATGCCAATAATAACGGTTATTGTACTGAATATGATGAAGGTGAACTGGTGCCATTTATTTGGACT CCAAAAGCCGGTATGCATGAATTAGACACTCGCGGCGTTAACTGGGATCGCTATAGTTGGATAAGAGCGCATGCTATCTC AGGTAATGGTGACGTCGTGCTCGGTTCTGCCGATGGCTGGGAAGCCGTGGCCTGGGTTAATGAAGGTGAAATGATCAATC TCTATGAGGAGGTTGGCGCGACTGAATCCCATGCGGCTTCTTACGATGGTAAAACGGTTGCATTGGCAACTGAGCAGGGA AACACTTTACTTTGGGATCATACTAAAAAAGGTGATGCAGCATTTACCGATATTGGTGGCCTGACTTGGTGTGAAGACAT TCCATTTTTATGGTGGGGCCAAGATCTCTGTGTACTCGAAAGTCCTGAATGGGTTCAAAGCACATTTGGTGCCGTCCCAG CTTCACCTTTTGATATGAACGACGATGGCAGTGTCATCATCGCTCGTGCAGGTGATTTCTGGGCTGGATTTGTCGGTGCT ATTTATATTGACACCATTGGTTGGATGCCGCTCACTGAGTTTTTCGGCAAGCAGGGAGTCATGGAGGCTGAAAATGCTTA TATGAACAACCCATTGTCAATTAGTGGCTCAGGTTCAGAAATGGTAGGAGGCATTGCAGGTGTGAATATGTCTTACCACG TCAACATGGATCAGGTCTATGTGTGTGAAGATGGACAATCTGTAAAAACTGGTTTCCCTAAAGGGCTTATTAGTAAGGTT AAGTCTGGTGCTGAATTTGGCCGCTGTGAACATCTTAATTAA
Upstream 100 bases:
>100_bases ACATGATGACTAACCCTACAGCTATCAGTGCCGCTTTCTTTATGAGTGTTGTTGGACGCGCCGTTTCACAGCAGTGGATT GACAATGGGAAGATGAAATA
Downstream 100 bases:
>100_bases CAATATGCTTTAATCTAGTCGCCACTCGAGAGTACTCGAGTGGCTTAATCTGCAATTCTAATCACTAGTCTCAATCTCTA AACACCTGCACTAAACATCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 813; Mature: 813
Protein sequence:
>813_residues MKLSKSTLAIAMFLTSGTVMAAGPLYTTDGANPQPYKWDTSAGSIPVYVDGGAAFTFDYDGSVFLSIERANEITQFAFDQ WNNVETSTFEANIAGSIEEQVGIADVTGANAAQIYTVENGYGFYVLYDTDGSILEDFFGVPKSAVLGIAFPEWADENGNI TEATAVLNGWNVYVQDTKGEQVAGVFTHEFGHAINLSHSQTNGQLAYLSWPGAPLYPGVAGCDVEAIHDFEYPAEYGGNP ADPDIIETMFPFIRHDGVGGVSQSTVNVLDDRVSISNLYPTAEYKSQFGSIEGTLRLKDGQTEYSGINIIARNVNDPLFD AVSAQSGNLTQGKVGPDGSFKINGLTPGQSYVLYTEEIYQGGYPTQQTPLVSVAEYWNEAEGSNPAADDACDVTPIIAEA GKTKQADLTFNGYDDGIEFRPIVNAHLTDLAKNGRSSMGVINGIGFTWDENKDFTILPDYIRVNSGRMNRNGNKLLVNSD LDGNGISAPAIWTKAHGAMSLGDLTGNTCGGSGMEGMQAASGWDIDDAGNTVVGLAYKDANNNGYCTEYDEGELVPFIWT PKAGMHELDTRGVNWDRYSWIRAHAISGNGDVVLGSADGWEAVAWVNEGEMINLYEEVGATESHAASYDGKTVALATEQG NTLLWDHTKKGDAAFTDIGGLTWCEDIPFLWWGQDLCVLESPEWVQSTFGAVPASPFDMNDDGSVIIARAGDFWAGFVGA IYIDTIGWMPLTEFFGKQGVMEAENAYMNNPLSISGSGSEMVGGIAGVNMSYHVNMDQVYVCEDGQSVKTGFPKGLISKV KSGAEFGRCEHLN
Sequences:
>Translated_813_residues MKLSKSTLAIAMFLTSGTVMAAGPLYTTDGANPQPYKWDTSAGSIPVYVDGGAAFTFDYDGSVFLSIERANEITQFAFDQ WNNVETSTFEANIAGSIEEQVGIADVTGANAAQIYTVENGYGFYVLYDTDGSILEDFFGVPKSAVLGIAFPEWADENGNI TEATAVLNGWNVYVQDTKGEQVAGVFTHEFGHAINLSHSQTNGQLAYLSWPGAPLYPGVAGCDVEAIHDFEYPAEYGGNP ADPDIIETMFPFIRHDGVGGVSQSTVNVLDDRVSISNLYPTAEYKSQFGSIEGTLRLKDGQTEYSGINIIARNVNDPLFD AVSAQSGNLTQGKVGPDGSFKINGLTPGQSYVLYTEEIYQGGYPTQQTPLVSVAEYWNEAEGSNPAADDACDVTPIIAEA GKTKQADLTFNGYDDGIEFRPIVNAHLTDLAKNGRSSMGVINGIGFTWDENKDFTILPDYIRVNSGRMNRNGNKLLVNSD LDGNGISAPAIWTKAHGAMSLGDLTGNTCGGSGMEGMQAASGWDIDDAGNTVVGLAYKDANNNGYCTEYDEGELVPFIWT PKAGMHELDTRGVNWDRYSWIRAHAISGNGDVVLGSADGWEAVAWVNEGEMINLYEEVGATESHAASYDGKTVALATEQG NTLLWDHTKKGDAAFTDIGGLTWCEDIPFLWWGQDLCVLESPEWVQSTFGAVPASPFDMNDDGSVIIARAGDFWAGFVGA IYIDTIGWMPLTEFFGKQGVMEAENAYMNNPLSISGSGSEMVGGIAGVNMSYHVNMDQVYVCEDGQSVKTGFPKGLISKV KSGAEFGRCEHLN >Mature_813_residues MKLSKSTLAIAMFLTSGTVMAAGPLYTTDGANPQPYKWDTSAGSIPVYVDGGAAFTFDYDGSVFLSIERANEITQFAFDQ WNNVETSTFEANIAGSIEEQVGIADVTGANAAQIYTVENGYGFYVLYDTDGSILEDFFGVPKSAVLGIAFPEWADENGNI TEATAVLNGWNVYVQDTKGEQVAGVFTHEFGHAINLSHSQTNGQLAYLSWPGAPLYPGVAGCDVEAIHDFEYPAEYGGNP ADPDIIETMFPFIRHDGVGGVSQSTVNVLDDRVSISNLYPTAEYKSQFGSIEGTLRLKDGQTEYSGINIIARNVNDPLFD AVSAQSGNLTQGKVGPDGSFKINGLTPGQSYVLYTEEIYQGGYPTQQTPLVSVAEYWNEAEGSNPAADDACDVTPIIAEA GKTKQADLTFNGYDDGIEFRPIVNAHLTDLAKNGRSSMGVINGIGFTWDENKDFTILPDYIRVNSGRMNRNGNKLLVNSD LDGNGISAPAIWTKAHGAMSLGDLTGNTCGGSGMEGMQAASGWDIDDAGNTVVGLAYKDANNNGYCTEYDEGELVPFIWT PKAGMHELDTRGVNWDRYSWIRAHAISGNGDVVLGSADGWEAVAWVNEGEMINLYEEVGATESHAASYDGKTVALATEQG NTLLWDHTKKGDAAFTDIGGLTWCEDIPFLWWGQDLCVLESPEWVQSTFGAVPASPFDMNDDGSVIIARAGDFWAGFVGA IYIDTIGWMPLTEFFGKQGVMEAENAYMNNPLSISGSGSEMVGGIAGVNMSYHVNMDQVYVCEDGQSVKTGFPKGLISKV KSGAEFGRCEHLN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 87372; Mature: 87372
Theoretical pI: Translated: 3.98; Mature: 3.98
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLSKSTLAIAMFLTSGTVMAAGPLYTTDGANPQPYKWDTSAGSIPVYVDGGAAFTFDYD CCCCCCEEEEEEEEECCCEEECCCEEECCCCCCCCEEECCCCCCEEEEECCCEEEEEECC GSVFLSIERANEITQFAFDQWNNVETSTFEANIAGSIEEQVGIADVTGANAAQIYTVENG CEEEEEEECCCHHHHHHHHCCCCCCCEEEEEEECCCHHHHCCEEEECCCCCEEEEEEECC YGFYVLYDTDGSILEDFFGVPKSAVLGIAFPEWADENGNITEATAVLNGWNVYVQDTKGE EEEEEEECCCCHHHHHHHCCCCHHEEEEECCCCCCCCCCEEEEEEEEECCEEEEECCCCC QVAGVFTHEFGHAINLSHSQTNGQLAYLSWPGAPLYPGVAGCDVEAIHDFEYPAEYGGNP EEEEEEECCCCCEEECCCCCCCCEEEEEECCCCCCCCCCCCCCHHEEECCCCCHHHCCCC ADPDIIETMFPFIRHDGVGGVSQSTVNVLDDRVSISNLYPTAEYKSQFGSIEGTLRLKDG CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCEEHHHCCCCHHHHHHCCCCEEEEEEECC QTEYSGINIIARNVNDPLFDAVSAQSGNLTQGKVGPDGSFKINGLTPGQSYVLYTEEIYQ CCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEHHHHC GGYPTQQTPLVSVAEYWNEAEGSNPAADDACDVTPIIAEAGKTKQADLTFNGYDDGIEFR CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCEEEEEECCCCCCEEEE PIVNAHLTDLAKNGRSSMGVINGIGFTWDENKDFTILPDYIRVNSGRMNRNGNKLLVNSD EECHHHHHHHHHCCCCCCCEEECCCEEECCCCCEEEECHHEEECCCEECCCCCEEEEECC LDGNGISAPAIWTKAHGAMSLGDLTGNTCGGSGMEGMQAASGWDIDDAGNTVVGLAYKDA CCCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCCHHCCCCCCCCCCCEEEEEEEEEC NNNGYCTEYDEGELVPFIWTPKAGMHELDTRGVNWDRYSWIRAHAISGNGDVVLGSADGW CCCCCEEECCCCCEEEEEECCCCCCHHHHCCCCCCCCEEEEEEEEECCCCCEEEECCCCC EAVAWVNEGEMINLYEEVGATESHAASYDGKTVALATEQGNTLLWDHTKKGDAAFTDIGG EEEEEECCCCEEEEHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCEEEECCC LTWCEDIPFLWWGQDLCVLESPEWVQSTFGAVPASPFDMNDDGSVIIARAGDFWAGFVGA CCHHHCCCEEEECCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHE IYIDTIGWMPLTEFFGKQGVMEAENAYMNNPLSISGSGSEMVGGIAGVNMSYHVNMDQVY EEEHHCCCCHHHHHHCCCCCCCCCHHHCCCCEEECCCCCHHHCEEECCCEEEEECCCEEE VCEDGQSVKTGFPKGLISKVKSGAEFGRCEHLN EECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MKLSKSTLAIAMFLTSGTVMAAGPLYTTDGANPQPYKWDTSAGSIPVYVDGGAAFTFDYD CCCCCCEEEEEEEEECCCEEECCCEEECCCCCCCCEEECCCCCCEEEEECCCEEEEEECC GSVFLSIERANEITQFAFDQWNNVETSTFEANIAGSIEEQVGIADVTGANAAQIYTVENG CEEEEEEECCCHHHHHHHHCCCCCCCEEEEEEECCCHHHHCCEEEECCCCCEEEEEEECC YGFYVLYDTDGSILEDFFGVPKSAVLGIAFPEWADENGNITEATAVLNGWNVYVQDTKGE EEEEEEECCCCHHHHHHHCCCCHHEEEEECCCCCCCCCCEEEEEEEEECCEEEEECCCCC QVAGVFTHEFGHAINLSHSQTNGQLAYLSWPGAPLYPGVAGCDVEAIHDFEYPAEYGGNP EEEEEEECCCCCEEECCCCCCCCEEEEEECCCCCCCCCCCCCCHHEEECCCCCHHHCCCC ADPDIIETMFPFIRHDGVGGVSQSTVNVLDDRVSISNLYPTAEYKSQFGSIEGTLRLKDG CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCEEHHHCCCCHHHHHHCCCCEEEEEEECC QTEYSGINIIARNVNDPLFDAVSAQSGNLTQGKVGPDGSFKINGLTPGQSYVLYTEEIYQ CCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEHHHHC GGYPTQQTPLVSVAEYWNEAEGSNPAADDACDVTPIIAEAGKTKQADLTFNGYDDGIEFR CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCEEEEEECCCCCCEEEE PIVNAHLTDLAKNGRSSMGVINGIGFTWDENKDFTILPDYIRVNSGRMNRNGNKLLVNSD EECHHHHHHHHHCCCCCCCEEECCCEEECCCCCEEEECHHEEECCCEECCCCCEEEEECC LDGNGISAPAIWTKAHGAMSLGDLTGNTCGGSGMEGMQAASGWDIDDAGNTVVGLAYKDA CCCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCCHHCCCCCCCCCCCEEEEEEEEEC NNNGYCTEYDEGELVPFIWTPKAGMHELDTRGVNWDRYSWIRAHAISGNGDVVLGSADGW CCCCCEEECCCCCEEEEEECCCCCCHHHHCCCCCCCCEEEEEEEEECCCCCEEEECCCCC EAVAWVNEGEMINLYEEVGATESHAASYDGKTVALATEQGNTLLWDHTKKGDAAFTDIGG EEEEEECCCCEEEEHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCEEEECCC LTWCEDIPFLWWGQDLCVLESPEWVQSTFGAVPASPFDMNDDGSVIIARAGDFWAGFVGA CCHHHCCCEEEECCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHE IYIDTIGWMPLTEFFGKQGVMEAENAYMNNPLSISGSGSEMVGGIAGVNMSYHVNMDQVY EEEHHCCCCHHHHHHCCCCCCCCCHHHCCCCEEECCCCCHHHCEEECCCEEEEECCCEEE VCEDGQSVKTGFPKGLISKVKSGAEFGRCEHLN EECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA