| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167623868
Identifier: 167623868
GI number: 167623868
Start: 2331299
End: 2331790
Strand: Direct
Name: 167623868
Synonym: Shal_1938
Alternate gene names: NA
Gene position: 2331299-2331790 (Clockwise)
Preceding gene: 167623866
Following gene: 167623869
Centisome position: 44.6
GC content: 48.17
Gene sequence:
>492_bases ATGAGTATTTCGCAGCTAGAAAGTGCATTAATCAATGAATCTCAGTTAGGTTCGAGACTCAACCATGCCGTTGGTTCTAA CCGACGGGGTGAGTTTGGTCTATTGCTTTCTATGCTATCGGAAGATGCGCGTGATATGGCCCAGTTTCAGACTGCGGCTC ACCTTAGCCATGATTTGCGAATCAAATTCGAGCTTCCGGCGCCACAGACGTTAATTGGACAACTCGATGATGACATAATG GTGACAGATAACAGCTTAGTCCACCAACAAAGCGGCGCCACGGCTTTTCGTTTAGCGAATACGCTCAATGAAGAGGCTTT GGTTATTCGCTGCAAAGAGTCGTTAGCGATGCAGGAGGTGCTGGCTAACTGTGCTCTGTCTGTTCGTCAGCGCTATGGCC AAGTGTCGGTAGCACCCAAAGTGGAACTCACCCATTTTGTCGATCAATTGGTCATGCAGCGTCAAATGGGTGAATTAATC GCCCAAGCTTGA
Upstream 100 bases:
>100_bases ATGAGCTATGAGCTTAAAACATTAAATAAAACCTAAAGTATTCGTTTGAACGGTCGATTAACTTACAACGAGTTGTTTTG TAGGTTTATTTTTGTTCAAA
Downstream 100 bases:
>100_bases AGATGAGTCTGCTTTATTTTGAATTGCTGATATATAATCAACCATTCAAATGATCCATTGTGAGACACATTAAGATGAAA AATATTCAAAAGGCACAATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 163; Mature: 162
Protein sequence:
>163_residues MSISQLESALINESQLGSRLNHAVGSNRRGEFGLLLSMLSEDARDMAQFQTAAHLSHDLRIKFELPAPQTLIGQLDDDIM VTDNSLVHQQSGATAFRLANTLNEEALVIRCKESLAMQEVLANCALSVRQRYGQVSVAPKVELTHFVDQLVMQRQMGELI AQA
Sequences:
>Translated_163_residues MSISQLESALINESQLGSRLNHAVGSNRRGEFGLLLSMLSEDARDMAQFQTAAHLSHDLRIKFELPAPQTLIGQLDDDIM VTDNSLVHQQSGATAFRLANTLNEEALVIRCKESLAMQEVLANCALSVRQRYGQVSVAPKVELTHFVDQLVMQRQMGELI AQA >Mature_162_residues SISQLESALINESQLGSRLNHAVGSNRRGEFGLLLSMLSEDARDMAQFQTAAHLSHDLRIKFELPAPQTLIGQLDDDIMV TDNSLVHQQSGATAFRLANTLNEEALVIRCKESLAMQEVLANCALSVRQRYGQVSVAPKVELTHFVDQLVMQRQMGELIA QA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18003; Mature: 17872
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSISQLESALINESQLGSRLNHAVGSNRRGEFGLLLSMLSEDARDMAQFQTAAHLSHDLR CCHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE IKFELPAPQTLIGQLDDDIMVTDNSLVHQQSGATAFRLANTLNEEALVIRCKESLAMQEV EEEECCCCHHHHHCCCCCEEEECCHHHHHCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHH LANCALSVRQRYGQVSVAPKVELTHFVDQLVMQRQMGELIAQA HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SISQLESALINESQLGSRLNHAVGSNRRGEFGLLLSMLSEDARDMAQFQTAAHLSHDLR CHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE IKFELPAPQTLIGQLDDDIMVTDNSLVHQQSGATAFRLANTLNEEALVIRCKESLAMQEV EEEECCCCHHHHHCCCCCEEEECCHHHHHCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHH LANCALSVRQRYGQVSVAPKVELTHFVDQLVMQRQMGELIAQA HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA