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The map label for this gene is rnfB [H]

Identifier: 167623860

GI number: 167623860

Start: 2319554

End: 2320123

Strand: Reverse

Name: rnfB [H]

Synonym: Shal_1930

Alternate gene names: 167623860

Gene position: 2320123-2319554 (Counterclockwise)

Preceding gene: 167623861

Following gene: 167623859

Centisome position: 44.39

GC content: 47.89

Gene sequence:

>570_bases
ATGTCAGGTATTGTCATCGCTATTGTTGTACTAACAATACTCGCGCTAGTCTTTGGTATTTTACTGGGATTTGCCGCAGA
AAAATTTAAAGTTGAAGGTAACCCACTCACAGACCAAGTTGAAGCATTATTGCCACAAACACAATGTGGTCAATGTGGTT
ACCCCGGCTGTCGCCCTTATGCCGAAGCCATCGCCAATGGCGACAAGATCAATAAGTGCCCACCAGGTGGTACGGCCACC
ATGGAGAAACTCGCCGATCTGATGGGAGTCGATCCTGAACCTCTCAATGCAACCGATGAAGTGCAAGTAAAGAAAGTCGC
CTTCATTCGTGAAGATGAGTGTATCGGCTGTACCAAGTGTATCCAAGCCTGCCCTGTCGATGCCATTCTGGGCTCTGGTA
AGTTAATGCACACCGTCATTACTGACTATTGTACCGGTTGCGATCTGTGCGTTGCGCCTTGCCCAGTCGATTGTATTGAT
ATGCTACCCGTAGCACAAACCACCAAGACTTGGGATTGGCAGCTTAATGCCATCCCCGTAAAACAGTTGCAAGAGGATAA
GCCGTGTTAA

Upstream 100 bases:

>100_bases
CCGATGTGCCCACACCTTTCAAGGGTGGCGCAATTGCAATGGTTACAGCAGGACTTATGTCCCTAGCCTTTATGGGATTC
ACAGGATTGGTTAAATAAAC

Downstream 100 bases:

>100_bases
CTTTATTAGAGCAAATTGATAAAGGAACGCTTTGGCGCTCACATGGTGGCGTTCACCCTCCTGAATTAAAAGCATTATCT
AACAAGAGCCGAATTGGACA

Product: electron transport complex protein RnfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MSGIVIAIVVLTILALVFGILLGFAAEKFKVEGNPLTDQVEALLPQTQCGQCGYPGCRPYAEAIANGDKINKCPPGGTAT
MEKLADLMGVDPEPLNATDEVQVKKVAFIREDECIGCTKCIQACPVDAILGSGKLMHTVITDYCTGCDLCVAPCPVDCID
MLPVAQTTKTWDWQLNAIPVKQLQEDKPC

Sequences:

>Translated_189_residues
MSGIVIAIVVLTILALVFGILLGFAAEKFKVEGNPLTDQVEALLPQTQCGQCGYPGCRPYAEAIANGDKINKCPPGGTAT
MEKLADLMGVDPEPLNATDEVQVKKVAFIREDECIGCTKCIQACPVDAILGSGKLMHTVITDYCTGCDLCVAPCPVDCID
MLPVAQTTKTWDWQLNAIPVKQLQEDKPC
>Mature_188_residues
SGIVIAIVVLTILALVFGILLGFAAEKFKVEGNPLTDQVEALLPQTQCGQCGYPGCRPYAEAIANGDKINKCPPGGTATM
EKLADLMGVDPEPLNATDEVQVKKVAFIREDECIGCTKCIQACPVDAILGSGKLMHTVITDYCTGCDLCVAPCPVDCIDM
LPVAQTTKTWDWQLNAIPVKQLQEDKPC

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=184, Percent_Identity=55.9782608695652, Blast_Score=227, Evalue=4e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 20202; Mature: 20071

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
10.1 %Cys+Met (Translated Protein)
7.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
9.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGIVIAIVVLTILALVFGILLGFAAEKFKVEGNPLTDQVEALLPQTQCGQCGYPGCRPY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHCCCCCCCCCCCCCCHHH
AEAIANGDKINKCPPGGTATMEKLADLMGVDPEPLNATDEVQVKKVAFIREDECIGCTKC
HHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHH
IQACPVDAILGSGKLMHTVITDYCTGCDLCVAPCPVDCIDMLPVAQTTKTWDWQLNAIPV
HHHCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEECCCCH
KQLQEDKPC
HHHCCCCCC
>Mature Secondary Structure 
SGIVIAIVVLTILALVFGILLGFAAEKFKVEGNPLTDQVEALLPQTQCGQCGYPGCRPY
CCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHCCCCCCCCCCCCCCHHH
AEAIANGDKINKCPPGGTATMEKLADLMGVDPEPLNATDEVQVKKVAFIREDECIGCTKC
HHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHH
IQACPVDAILGSGKLMHTVITDYCTGCDLCVAPCPVDCIDMLPVAQTTKTWDWQLNAIPV
HHHCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEECCCCH
KQLQEDKPC
HHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA