| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167623829
Identifier: 167623829
GI number: 167623829
Start: 2281578
End: 2282543
Strand: Direct
Name: 167623829
Synonym: Shal_1899
Alternate gene names: NA
Gene position: 2281578-2282543 (Clockwise)
Preceding gene: 167623827
Following gene: 167623830
Centisome position: 43.65
GC content: 42.13
Gene sequence:
>966_bases ATGGCGATGCTTGAGCAGAATGTCGAAGTGGACATAAGCTTTACGGCTGACAAAAAAGAGGGGCCGGATCTGAGCCTCAC TTTTGCCTCACTCGATTGTCACTCAAAGCTTGAAGTAAATTTATTAAGCGAAAGTTGCTTATTAAGTGAAATGAGCCAAG TAGCTGACTATAATAATGGCCATAGACACAAGACTGGATTTAATACCTTACTTGTCATCACCAGCGTATTCTTGTTGCAC CTTATCGCTATCATTGTGATTAATCATTTATGGACTCGCGCAATACCGATAGCTAAAAAGGTAGTGGCCCCTAAAATTCA ATCCTATCTGTACCAAATACCTAAAAATGCCTCTGAGCAAGTAATGCAAGTTGGTGGTCATGTTGATAATCACGTTGATA GTCAAGCGAAAGTAGAGCAAACGGTAAATCAGCAAGAAAATAAAGAGACTGCGGCCATTGTGCAGCCAGAGACAAAATGG GTACCTGTAAACGCTAATCAGGCAAATGAGCAAGTTAAGTCGGCCGTAATGGCACCGCTAGTCTCCAGTCCAACTCAGAG CTTAAACCAAAGAATAGGTCAAAAAACAAGCAGGCCAAGTCAATTTACTCAGTCTTATTTAGCAAAACAAAGGGCCAATA AACTCGATGATCTCGTTATAGACAGCGCTAATCAATACACGAGAAAACGCTCCTTAAGTGAGATGGATGCAGACATGCAA GAGTTGGTTTTTCTAGAGGTCGATAAGTACAGCAAGGTGAGCATCACCGATCACAGATTAGATCCAAACCGCATCGTTAG GCTGGGGGATACTTGCTACCGTATTGTCAAAGTACCAACACAAATTAACCCCTACGCAGAAAACCTAGGTTACCCCTTTA ATTGTGGTGGCGATAAGATTAAAAAAGCCATTAACGATGCAATATCCGCTCGACTAGAAAAGCGCATGGTGAGCAAAAAC CGCTAA
Upstream 100 bases:
>100_bases CAATAAAATCTTTTTTGCTCTAAGCTGTTGTCACTATGGAAATAATGTTCAATCAAGCTAAACAGTTAGGATGAAGCAAT TGAGATTAGTAGGAAAATCG
Downstream 100 bases:
>100_bases TTTTTTAGTTGATAAAAATTCATCTGTTTTTATGTTTTAATATGGATTTTAATTTAAATCTAAATATTACATGTGTTTAC GGAGCTAATTATTTGTTTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 321; Mature: 320
Protein sequence:
>321_residues MAMLEQNVEVDISFTADKKEGPDLSLTFASLDCHSKLEVNLLSESCLLSEMSQVADYNNGHRHKTGFNTLLVITSVFLLH LIAIIVINHLWTRAIPIAKKVVAPKIQSYLYQIPKNASEQVMQVGGHVDNHVDSQAKVEQTVNQQENKETAAIVQPETKW VPVNANQANEQVKSAVMAPLVSSPTQSLNQRIGQKTSRPSQFTQSYLAKQRANKLDDLVIDSANQYTRKRSLSEMDADMQ ELVFLEVDKYSKVSITDHRLDPNRIVRLGDTCYRIVKVPTQINPYAENLGYPFNCGGDKIKKAINDAISARLEKRMVSKN R
Sequences:
>Translated_321_residues MAMLEQNVEVDISFTADKKEGPDLSLTFASLDCHSKLEVNLLSESCLLSEMSQVADYNNGHRHKTGFNTLLVITSVFLLH LIAIIVINHLWTRAIPIAKKVVAPKIQSYLYQIPKNASEQVMQVGGHVDNHVDSQAKVEQTVNQQENKETAAIVQPETKW VPVNANQANEQVKSAVMAPLVSSPTQSLNQRIGQKTSRPSQFTQSYLAKQRANKLDDLVIDSANQYTRKRSLSEMDADMQ ELVFLEVDKYSKVSITDHRLDPNRIVRLGDTCYRIVKVPTQINPYAENLGYPFNCGGDKIKKAINDAISARLEKRMVSKN R >Mature_320_residues AMLEQNVEVDISFTADKKEGPDLSLTFASLDCHSKLEVNLLSESCLLSEMSQVADYNNGHRHKTGFNTLLVITSVFLLHL IAIIVINHLWTRAIPIAKKVVAPKIQSYLYQIPKNASEQVMQVGGHVDNHVDSQAKVEQTVNQQENKETAAIVQPETKWV PVNANQANEQVKSAVMAPLVSSPTQSLNQRIGQKTSRPSQFTQSYLAKQRANKLDDLVIDSANQYTRKRSLSEMDADMQE LVFLEVDKYSKVSITDHRLDPNRIVRLGDTCYRIVKVPTQINPYAENLGYPFNCGGDKIKKAINDAISARLEKRMVSKNR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36035; Mature: 35903
Theoretical pI: Translated: 8.58; Mature: 8.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMLEQNVEVDISFTADKKEGPDLSLTFASLDCHSKLEVNLLSESCLLSEMSQVADYNNG CCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCC HRHKTGFNTLLVITSVFLLHLIAIIVINHLWTRAIPIAKKVVAPKIQSYLYQIPKNASEQ CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH VMQVGGHVDNHVDSQAKVEQTVNQQENKETAAIVQPETKWVPVNANQANEQVKSAVMAPL HHHHCCCHHHCCCHHHHHHHHHHHHCCCCCEEEECCCCCEEECCCCHHHHHHHHHHHHHH VSSPTQSLNQRIGQKTSRPSQFTQSYLAKQRANKLDDLVIDSANQYTRKRSLSEMDADMQ HCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHH ELVFLEVDKYSKVSITDHRLDPNRIVRLGDTCYRIVKVPTQINPYAENLGYPFNCGGDKI HHHEEEECCCCEEEEECCCCCHHHHEEHHHHHHHHHCCCCCCCCHHHHCCCCCCCCHHHH KKAINDAISARLEKRMVSKNR HHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AMLEQNVEVDISFTADKKEGPDLSLTFASLDCHSKLEVNLLSESCLLSEMSQVADYNNG CCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCC HRHKTGFNTLLVITSVFLLHLIAIIVINHLWTRAIPIAKKVVAPKIQSYLYQIPKNASEQ CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH VMQVGGHVDNHVDSQAKVEQTVNQQENKETAAIVQPETKWVPVNANQANEQVKSAVMAPL HHHHCCCHHHCCCHHHHHHHHHHHHCCCCCEEEECCCCCEEECCCCHHHHHHHHHHHHHH VSSPTQSLNQRIGQKTSRPSQFTQSYLAKQRANKLDDLVIDSANQYTRKRSLSEMDADMQ HCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHH ELVFLEVDKYSKVSITDHRLDPNRIVRLGDTCYRIVKVPTQINPYAENLGYPFNCGGDKI HHHEEEECCCCEEEEECCCCCHHHHEEHHHHHHHHHCCCCCCCCHHHHCCCCCCCCHHHH KKAINDAISARLEKRMVSKNR HHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA